Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008440

Physical Location & Seq

Genomic Coordinates Reverse (-)

9773580 .. 9775481

Gene Structure 1902 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G28040.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGTCCGGAACATTTCTTGTCGATGAAATCAACTACCAAAAGCAGCAGATTTCTATCAGCGACCCTGAAAACTGTATGGTTAAAAGGCTTTTAACCTTCAATACTTCAGGATCTCCTTTCTCTTATGGCTTCAGTTTCTACTACACGTTCTTGACCTGTCCGAATGAGGTCGTGATACCGGTTTGGTCTCTGATGTCCATCCCTTGCCTAAGCAATTCTACCTCCTCCTTCTTCGCCACGTCTAATTTGACTTTTTCAAAATTGTTGCCGCCTTCTTGTCAGATTGTGAAAGGACTATACGTTCCTGTTGATGTGATATATAAAGATGTGATAACTGAAGAAAAAGGGTTCTCTACAGTGCCCTGGCTTGGAAACGTCTTGTTGGAATGGAGCTCGCCGAATTGCAGAGGTTGTGAAAAGGAGTCCTTGAGATGTGGTTTCAAGAACAAGGCCTCCCTCGAAGTCAAATACTTGGCTGATCCACCCGATGAAACAAAAAGTAGATTACGACCACTGATAATAACCCTTTGCATAATCGGAGGAATCACCGCAACTTGTATTGCTGCTATCCGCATTTACAATTCCGAGAGGTTTGTCAATCAGAGAAGACAAAATGCAGCTATTACAGCCAGAAACACAACGCAACAACCACGAGGGGTTGTGGTCACTACAGGTCTTGACCAATCTACAATAGAATCATACAAGAAAGTGGAGTTGGGAGAAAGTAGAAGGCTTCCAGGTACTAATGGTATCATCTGTCCCATTTGTTTATCAGAATATGCTAGCAAAGAGACTGTACGGTGCATGCCAGAATGTGATCACTGTTTCCACGTCCAATGTATCGATGAGTGGCTCAAGATTCATAGTTCATGTCCTGTTTGTCGCAACTCACGCTCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GUB_WAK_bind WAK_assoc zf-RING_2

Protein Analysis

299

Amino Acids

33.5

Weight (kDa)

8.26

Isoelectric Point (pI)

54.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	253 - 295	4.3e-13	Ring finger domain
zf-RING_11	PF17123	253 - 281	1.9e-07	RING-like zinc finger
zf-rbx1	PF12678	253 - 295	5.2e-07	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008440)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28040 AT2G25410 AT2G46493 AT2G46494 AT2G46495 AT2G46495 AT5G36001 AT5G36001
fragaria_vesca	FvH4_7g16350
malus_domestica	MD07G1148900.v1.1
prunus_persica	Prupe.2G187400_v2.0.a1
pyrus_communis	pycom07g14790
rosa_chinensis	RchiOBHm_Chr1g0359361
rosa_laevigata	RLG00000027876
rosa_multiflora	Rmu_ssc0000358.1_g000002
rosa_roxburghii	Rroxscaffold_4G00297050
rosa_rugosa	Rorug01G0270500
rosa_samantha	Rh1AG283900 Rh1AG284000 Rh1BG250100 Rh1CG268000 Rh1DG279000
rosa_wichuraiana	Rw1G025210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	5
AciI	CCGC	3 cut(s)	269, 549, 571
AclWI	GGATC	2 cut(s)	118, 473
AcuI	CTGAAG	3 cut(s)	90, 115, 357
AfaI	GTAC	2 cut(s)	742, 798
AfiI	CCNNNNNNNGG	1 cut(s)	368
AflIII	ACRYGT	1 cut(s)	144
AgeI	ACCGGT	1 cut(s)	178
AgsI	TTSAA	3 cut(s)	100, 258, 442
AjiI	CACGTC	2 cut(s)	240, 832
AjnI	CCWGG	2 cut(s)	362, 736
AjuI	GAANNNNNNNTTGG	2 cut(s)	698, 730
AloI	GAACNNNNNNTCC	4 cut(s)	285, 317, 437, 469
AluBI	AGCT	2 cut(s)	393, 620
AluI	AGCT	2 cut(s)	393, 620
Alw21I	GWGCWC	1 cut(s)	395
Alw26I	GTCTC	2 cut(s)	192, 785
AlwI	GGATC	2 cut(s)	118, 473
Aor13HI	TCCGGA	1 cut(s)	5
AoxI	GGCC	1 cut(s)	450
ApeKI	GCWGC	3 cut(s)	43, 563, 617
AsiGI	ACCGGT	1 cut(s)	178
AsuHPI	GGTGA	1 cut(s)	538
AsuNHI	GCTAGC	1 cut(s)	782
BaeGI	GKGCMC	1 cut(s)	363
BanII	GRGCYC	1 cut(s)	395
BauI	CACGAG	1 cut(s)	651
BbsI	GAAGAC	1 cut(s)	613
Bbv12I	GWGCWC	1 cut(s)	395
BbvI	GCAGC	3 cut(s)	55, 550, 629
BccI	CCATC	1 cut(s)	206
BciT130I	CCWGG	2 cut(s)	364, 738
BclI	TGATCA	1 cut(s)	817
BcoDI	GTCTC	2 cut(s)	192, 785
BfaI	CTAG	1 cut(s)	783
BfmI	CTRYAG	2 cut(s)	354, 669
BisI	GCNGC	4 cut(s)	44, 269, 564, 618
BlsI	GCNGC	4 cut(s)	45, 270, 565, 619
Bme1390I	CCNGG	2 cut(s)	364, 738
BmgBI	CACGTC	2 cut(s)	240, 832
BmrFI	CCNGG	2 cut(s)	364, 738
BmtI	GCTAGC	1 cut(s)	786
BpiI	GAAGAC	1 cut(s)	613
Bpu10I	CCTNAGC	1 cut(s)	209
BpuEI	CTTGAG	2 cut(s)	448, 839
Bsa29I	ATCGAT	1 cut(s)	843
BsaBI	GATNNNNATC	2 cut(s)	53, 197
BsaI	GGTCTC	1 cut(s)	192
BsaJI	CCNNGG	1 cut(s)	362
BsaWI	WCCGGW	2 cut(s)	5, 178
BsaXI	ACNNNNNCTCC	2 cut(s)	437, 467
Bsc4I	CCNNNNNNNGG	1 cut(s)	368
Bse118I	RCCGGY	1 cut(s)	178
Bse8I	GATNNNNATC	2 cut(s)	53, 197
BseAI	TCCGGA	1 cut(s)	5
BseBI	CCWGG	2 cut(s)	364, 738
BseCI	ATCGAT	1 cut(s)	843
BseDI	CCNNGG	1 cut(s)	362
BseGI	GGATG	1 cut(s)	198
BseJI	GATNNNNATC	2 cut(s)	53, 197
BseLI	CCNNNNNNNGG	1 cut(s)	368
BseRI	GAGGAG	1 cut(s)	214
BseSI	GKGCMC	1 cut(s)	363
BseXI	GCAGC	3 cut(s)	55, 550, 629
BshFI	GGCC	1 cut(s)	452
BshTI	ACCGGT	1 cut(s)	178
BshVI	ATCGAT	1 cut(s)	843
BsiHKAI	GWGCWC	1 cut(s)	395
BsiSI	CCGG	2 cut(s)	6, 179
BslFI	GGGAC	1 cut(s)	744
BslI	CCNNNNNNNGG	1 cut(s)	368
BsmAI	GTCTC	2 cut(s)	192, 785
BsmFI	GGGAC	1 cut(s)	744
BsnI	GGCC	1 cut(s)	452
Bso31I	GGTCTC	1 cut(s)	192
Bsp1286I	GDGCHC	2 cut(s)	363, 395
Bsp13I	TCCGGA	1 cut(s)	5
Bsp143I	GATC	3 cut(s)	110, 478, 817
BspACI	CCGC	3 cut(s)	269, 549, 571
BspANI	GGCC	1 cut(s)	452
BspDI	ATCGAT	1 cut(s)	843
BspEI	TCCGGA	1 cut(s)	5
BspOI	GCTAGC	1 cut(s)	786
BspPI	GGATC	2 cut(s)	118, 473
BspTNI	GGTCTC	1 cut(s)	192
BsrFI	RCCGGY	1 cut(s)	178
BssAI	RCCGGY	1 cut(s)	178
BssECI	CCNNGG	1 cut(s)	362
BssMI	GATC	3 cut(s)	110, 478, 817
BssSI	CACGAG	1 cut(s)	651
Bst2BI	CACGAG	1 cut(s)	651
Bst2UI	CCWGG	2 cut(s)	364, 738
Bst4CI	ACNGT	5 cut(s)	74, 358, 796, 801, 824
BstC8I	GCNNGC	3 cut(s)	395, 784, 806
BstDEI	CTNAG	1 cut(s)	209
BstF5I	GGATG	1 cut(s)	198
BstKTI	GATC	3 cut(s)	113, 481, 820
BstMAI	GTCTC	2 cut(s)	192, 785
BstMBI	GATC	3 cut(s)	110, 478, 817
BstMWI	GCNNNNNNNGC	2 cut(s)	626, 891
BstNI	CCWGG	2 cut(s)	364, 738
BstNSI	RCATGY	1 cut(s)	808
BstSCI	CCNGG	2 cut(s)	362, 736
BstSFI	CTRYAG	2 cut(s)	354, 669
BstSLI	GKGCMC	1 cut(s)	363
BstV1I	GCAGC	3 cut(s)	55, 550, 629
BstV2I	GAAGAC	1 cut(s)	613
BstX2I	RGATCY	1 cut(s)	110
BstYI	RGATCY	1 cut(s)	110
Bsu15I	ATCGAT	1 cut(s)	843
BsuRI	GGCC	1 cut(s)	452
BsuTUI	ATCGAT	1 cut(s)	843
BtrI	CACGTC	2 cut(s)	240, 832
BtsCI	GGATG	1 cut(s)	198
BtsIMutI	CAGTG	3 cut(s)	363, 512, 820
Cac8I	GCNNGC	3 cut(s)	395, 784, 806
Cfr10I	RCCGGY	1 cut(s)	178
ClaI	ATCGAT	1 cut(s)	843
Csp6I	GTAC	2 cut(s)	741, 797
CspAI	ACCGGT	1 cut(s)	178
CviAII	CATG	2 cut(s)	805, 870
CviQI	GTAC	2 cut(s)	741, 797
DdeI	CTNAG	1 cut(s)	209
DpnI	GATC	3 cut(s)	112, 480, 819
DpnII	GATC	3 cut(s)	110, 478, 817
Ecl136II	GAGCTC	1 cut(s)	393
Eco147I	AGGCCT	1 cut(s)	452
Eco24I	GRGCYC	1 cut(s)	395
Eco31I	GGTCTC	1 cut(s)	192
Eco53kI	GAGCTC	1 cut(s)	393
Eco57I	CTGAAG	3 cut(s)	90, 115, 357
EcoICRI	GAGCTC	1 cut(s)	393
EcoRII	CCWGG	2 cut(s)	362, 736
EcoT38I	GRGCYC	1 cut(s)	395
FaeI	CATG	2 cut(s)	808, 873
FalI	AAGNNNNNCTT	2 cut(s)	410, 442
FaqI	GGGAC	1 cut(s)	744
FatI	CATG	2 cut(s)	804, 869
FbaI	TGATCA	1 cut(s)	817
Fnu4HI	GCNGC	4 cut(s)	44, 269, 564, 618
FokI	GGATG	1 cut(s)	185
FriOI	GRGCYC	1 cut(s)	395
Fsp4HI	GCNGC	4 cut(s)	44, 269, 564, 618
FspBI	CTAG	1 cut(s)	783
GluI	GCNGC	4 cut(s)	44, 269, 564, 618
HaeIII	GGCC	1 cut(s)	452
HapII	CCGG	2 cut(s)	6, 179
Hin1II	CATG	2 cut(s)	808, 873
HinfI	GANTC	4 cut(s)	422, 543, 695, 859
HpaII	CCGG	2 cut(s)	6, 179
HphI	GGTGA	1 cut(s)	538
Hpy188I	TCNGA	7 cut(s)	162, 192, 282, 539, 586, 603, 775
Hpy188III	TCNNGA	7 cut(s)	6, 108, 151, 172, 442, 677, 856
HpyAV	CCTTC	4 cut(s)	106, 238, 282, 723
HpyCH4III	ACNGT	5 cut(s)	74, 358, 796, 801, 824
HpyCH4IV	ACGT	5 cut(s)	146, 239, 300, 375, 831
HpyCH4V	TGCA	4 cut(s)	405, 531, 617, 804
HpyF10VI	GCNNNNNNNGC	2 cut(s)	626, 891
HpyF3I	CTNAG	1 cut(s)	209
HpySE526I	ACGT	5 cut(s)	146, 239, 300, 375, 831
Hsp92II	CATG	2 cut(s)	808, 873
Kpn2I	TCCGGA	1 cut(s)	5
Ksp22I	TGATCA	1 cut(s)	817
Kzo9I	GATC	3 cut(s)	110, 478, 817
LmnI	GCTCC	1 cut(s)	390
Lsp1109I	GCAGC	3 cut(s)	55, 550, 629
MaeI	CTAG	1 cut(s)	783
MaeII	ACGT	5 cut(s)	146, 239, 300, 375, 831
MaeIII	GTNAC	1 cut(s)	664
MalI	GATC	3 cut(s)	112, 480, 819
MboI	GATC	3 cut(s)	110, 478, 817
MboII	GAAGA	3 cut(s)	223, 350, 618
MflI	RGATCY	1 cut(s)	110
MhlI	GDGCHC	2 cut(s)	363, 395
MluCI	AATT	5 cut(s)	214, 244, 260, 400, 580
MlyI	GAGTC	1 cut(s)	431
MmeI	TCCRAC	1 cut(s)	363
MnlI	CCTC	9 cut(s)	160, 232, 235, 401, 463, 467, 533, 582, 647
MroI	TCCGGA	1 cut(s)	5
MseI	TTAA	2 cut(s)	81, 92
MspI	CCGG	2 cut(s)	6, 179
MspR9I	CCNGG	2 cut(s)	364, 738
MvaI	CCWGG	2 cut(s)	364, 738
MwoI	GCNNNNNNNGC	2 cut(s)	626, 891
NdeII	GATC	3 cut(s)	110, 478, 817
NheI	GCTAGC	1 cut(s)	782
NlaIII	CATG	2 cut(s)	808, 873
NmuCI	GTSAC	1 cut(s)	664
NspI	RCATGY	1 cut(s)	808
PaeI	GCATGC	1 cut(s)	808
PceI	AGGCCT	1 cut(s)	452
PfeI	GAWTC	3 cut(s)	543, 695, 859
PinAI	ACCGGT	1 cut(s)	178
PkrI	GCNGC	4 cut(s)	45, 270, 565, 619
PleI	GAGTC	1 cut(s)	430
PpsI	GAGTC	1 cut(s)	430
Psp124BI	GAGCTC	1 cut(s)	395
Psp6I	CCWGG	2 cut(s)	362, 736
PspGI	CCWGG	2 cut(s)	362, 736
PsuI	RGATCY	1 cut(s)	110
RsaI	GTAC	2 cut(s)	742, 798
RsaNI	GTAC	2 cut(s)	741, 797
SacI	GAGCTC	1 cut(s)	395
SaqAI	TTAA	2 cut(s)	81, 92
SatI	GCNGC	4 cut(s)	44, 269, 564, 618
Sau3AI	GATC	3 cut(s)	110, 478, 817
SchI	GAGTC	1 cut(s)	431
ScrFI	CCNGG	2 cut(s)	364, 738
SduI	GDGCHC	2 cut(s)	363, 395
SfcI	CTRYAG	2 cut(s)	354, 669
SmlI	CTYRAG	2 cut(s)	427, 854
SmoI	CTYRAG	2 cut(s)	427, 854
SphI	GCATGC	1 cut(s)	808
Sse9I	AATT	5 cut(s)	214, 244, 260, 400, 580
SseBI	AGGCCT	1 cut(s)	452
SsiI	CCGC	3 cut(s)	269, 549, 571
SspMI	CTAG	1 cut(s)	783
SstI	GAGCTC	1 cut(s)	395
StuI	AGGCCT	1 cut(s)	452
StyD4I	CCNGG	2 cut(s)	362, 736
TaaI	ACNGT	5 cut(s)	74, 358, 796, 801, 824
TaiI	ACGT	5 cut(s)	149, 242, 303, 378, 834
TaqI	TCGA	3 cut(s)	21, 459, 843
TasI	AATT	5 cut(s)	214, 244, 260, 400, 580
TauI	GCSGC	1 cut(s)	271
TfiI	GAWTC	3 cut(s)	543, 695, 859
Tru1I	TTAA	2 cut(s)	81, 92
Tru9I	TTAA	2 cut(s)	81, 92
TscAI	CASTG	3 cut(s)	363, 519, 827
TseFI	GTSAC	1 cut(s)	664
TseI	GCWGC	3 cut(s)	43, 563, 617
Tsp45I	GTSAC	1 cut(s)	664
TspDTI	ATGAA	4 cut(s)	39, 504, 851, 858
TspRI	CASTG	3 cut(s)	363, 519, 827
XceI	RCATGY	1 cut(s)	808
XspI	CTAG	1 cut(s)	783

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.