Prupe.2G187400_v2.0.a1

RING-H2 finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0008440
Physical Location & Seq
Reverse (-)
22801189 .. 22803346
2158 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G187400.1

Sequence Viewer

Length: 1128 bp
ATGGACATCTTAGACATCTTCTTCGCCCTTCTCTTCCTCTTCCCCCACATCTATGCCCGAGACGACTGCCCGGTCTCCGTCTGTGGCTACACCGGCTTCCCCATCCGCTTCCCGTTCCGGTTACAAGCCCGGCAACCCGAAAACTGCGGCTACCCGGGCTTCAACCTGACCTGCAACAGCCAGGGCCTAACAGTCATAAAACTTCCACTTTCCGGAGAGTTTTTCGTCAGAGCAATCAGCTATGCCACTCAAGAGATTCAGCTCTACGACCCCAACAATTGCCTCCCTCAAAAGCTTCTAAGTCTCAGCCTTGCAGGCTCTCCTTTTGTTGCTGCTGTGTATCAAAACTACACCTTCCTCAGCTGCCCGGCTTCCTTCACCAAGTCAAGGTTCACCCCCATTGACTGCCTCAGCAACTCCACCACCTCAGTTTTGGCCACGCCTTCCACCGCCCTTGCAAACTCCATGTCCACCACGTGTCGGATTCTTGCCACATTGGCTGTTCCGGTTACCAGGCAGGTCCAGACGGAGGACGGGTTCTCGACCAACCTTGATTCGGATCTTTTTTTGACTTGGTATGAACCCGCTTGCAGTGCCTGTGAGATCCAAGGTGGAATTTGCGGACTCTTAAGCAACACCAGCCAAGAACTTGTCTGCGACTACAATTCAACAGCAGGCGGATCAAACAAGGGCTTCCAAGTTTTCAGGATCATTTGCGTGTCCATCACGGTACCAGCCCTCACCTGCGCAGTTGGGATAGCCTGCTTTGCTTGCATCAAGGACAGGGTTCCTGGTGGCTCTGCACAACGAAGCGCCACCGCAGTTGCCGCCGAACCACAACCGCAAGAACCCACCATTGTAACCATGGGTCTGGACCAGACCACCATTGAGTCATATCAGATGCTAGTTCTTGGTGAGAGCCGCCGGCTGCCGGGGCCCAACGACACCACGTGCGCTATATGCTTGTCGGAGTATCTGACCAAGGAGACGGTGAGATGCATCCCGGAATGCAAACACTGCTTCCACGCTGCTTGTGTTGATGAGTGGCTTCGGTTGAACAGCACATGCCCAGTTTGCCGAAACAATCCATCCCCGGCACATGCCGACTCAAACTCGAACAATGTCTGA

Protein Analysis

376

Amino Acids

40.68

Weight (kDa)

5.16

Isoelectric Point (pI)

53.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0008440)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G28040 AT2G25410 AT2G46493 AT2G46494 AT2G46495 AT2G46495 AT5G36001 AT5G36001
fragaria_vesca FvH4_7g16350
malus_domestica MD07G1148900.v1.1
prunus_persica Prupe.2G187400_v2.0.a1
pyrus_communis pycom07g14790
rosa_chinensis RchiOBHm_Chr1g0359361
rosa_laevigata RLG00000027876
rosa_multiflora Rmu_ssc0000358.1_g000002
rosa_roxburghii Rroxscaffold_4G00297050
rosa_rugosa Rorug01G0270500
rosa_samantha Rh1AG283900 Rh1AG284000 Rh1BG250100 Rh1CG268000 Rh1DG279000
rosa_wichuraiana Rw1G025210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 752
AasI GACNNNNNNGTC 1 cut(s) 71
Acc16I TGCGCA 1 cut(s) 748
Acc36I ACCTGC 3 cut(s) 179, 508, 752
Acc65I GGTACC 1 cut(s) 730
AccB1I GGYRCC 1 cut(s) 730
AccIII TCCGGA 1 cut(s) 212
AclWI GGATC 4 cut(s) 567, 598, 688, 716
AcoI YGGCCR 1 cut(s) 435
AcsI RAATTY 1 cut(s) 615
AcvI CACGTG 2 cut(s) 477, 951
AdeI CACNNNGTG 2 cut(s) 477, 951
AfaI GTAC 1 cut(s) 732
AfiI CCNNNNNNNGG 6 cut(s) 212, 387, 480, 529, 556, 931
AflII CTTAAG 1 cut(s) 628
AflIII ACRYGT 1 cut(s) 476
AgsI TTSAA 3 cut(s) 163, 669, 1057
AjnI CCWGG 3 cut(s) 180, 512, 790
AjuI GAANNNNNNNTTGG 2 cut(s) 374, 406
AloI GAACNNNNNNTCC 2 cut(s) 521, 553
AluBI AGCT 4 cut(s) 240, 262, 295, 363
AluI AGCT 4 cut(s) 240, 262, 295, 363
Alw26I GTCTC 4 cut(s) 54, 79, 308, 980
AlwI GGATC 4 cut(s) 567, 598, 688, 716
AlwNI CAGNNNCTG 1 cut(s) 597
Ama87I CYCGRG 2 cut(s) 57, 154
Aor13HI TCCGGA 1 cut(s) 212
AoxI GGCC 3 cut(s) 184, 435, 935
ApaI GGGCCC 1 cut(s) 939
ApeKI GCWGC 4 cut(s) 332, 363, 928, 1028
ApoI RAATTY 1 cut(s) 615
ArsI GACNNNNNNTTYG 3 cut(s) 37, 452, 484
Asp718I GGTACC 1 cut(s) 730
AspLEI GCGC 3 cut(s) 749, 815, 956
AspS9I GGNCC 5 cut(s) 184, 520, 874, 935, 936
AsuC2I CCSGG 8 cut(s) 71, 130, 155, 156, 368, 933, 1004, 1094
AsuHPI GGTGA 5 cut(s) 370, 385, 733, 926, 1003
AvaI CYCGRG 2 cut(s) 57, 154
AvaII GGWCC 2 cut(s) 520, 874
BaeGI GKGCMC 1 cut(s) 939
BalI TGGCCA 1 cut(s) 437
BanI GGYRCC 1 cut(s) 730
BanII GRGCYC 1 cut(s) 939
BbrPI CACGTG 2 cut(s) 477, 951
BbvCI CCTCAGC 2 cut(s) 359, 410
BbvI GCAGC 4 cut(s) 319, 350, 915, 1015
BccI CCATC 3 cut(s) 110, 731, 1096
BcgI CGANNNNNNTGC 2 cut(s) 48, 82
BciT130I CCWGG 3 cut(s) 182, 514, 792
BcnI CCSGG 8 cut(s) 71, 130, 155, 156, 368, 933, 1004, 1094
BcoDI GTCTC 4 cut(s) 54, 79, 308, 980
BfaI CTAG 1 cut(s) 905
BfoI RGCGCY 1 cut(s) 816
BfrI CTTAAG 1 cut(s) 628
BfuAI ACCTGC 3 cut(s) 179, 508, 752
BglI GCCNNNNNGGC 2 cut(s) 315, 497
BisI GCNGC 7 cut(s) 148, 333, 364, 828, 922, 929, 1029
BlsI GCNGC 7 cut(s) 149, 334, 365, 829, 923, 930, 1030
Bme18I GGWCC 2 cut(s) 520, 874
BmeT110I CYCGRG 2 cut(s) 57, 154
BmgT120I GGNCC 5 cut(s) 184, 520, 874, 935, 936
BmiI GGNNCC 4 cut(s) 732, 789, 936, 937
BmrI ACTGGG 1 cut(s) 1064
BmsI GCATC 4 cut(s) 783, 891, 986, 1008
BmuI ACTGGG 1 cut(s) 1064
Bpu10I CCTNAGC 2 cut(s) 359, 410
BpuEI CTTGAG 1 cut(s) 234
BpuMI CCSGG 8 cut(s) 71, 130, 155, 156, 368, 933, 1004, 1094
BsaAI YACGTR 2 cut(s) 477, 951
BsaBI GATNNNNATC 1 cut(s) 558
BsaI GGTCTC 1 cut(s) 79
BsaJI CCNNGG 7 cut(s) 154, 181, 607, 864, 932, 981, 1092
BsaWI WCCGGW 3 cut(s) 117, 212, 505
BsaXI ACNNNNNCTCC 2 cut(s) 521, 551
Bsc4I CCNNNNNNNGG 6 cut(s) 212, 387, 480, 529, 556, 931
Bse118I RCCGGY 2 cut(s) 92, 924
Bse1I ACTGG 1 cut(s) 1070
Bse8I GATNNNNATC 1 cut(s) 558
BseAI TCCGGA 1 cut(s) 212
BseBI CCWGG 3 cut(s) 182, 514, 792
BseDI CCNNGG 7 cut(s) 154, 181, 607, 864, 932, 981, 1092
BseGI GGATG 3 cut(s) 102, 999, 1088
BseJI GATNNNNATC 1 cut(s) 558
BseLI CCNNNNNNNGG 6 cut(s) 212, 387, 480, 529, 556, 931
BseMII CTCAG 4 cut(s) 319, 373, 424, 441
BseNI ACTGG 1 cut(s) 1070
BseSI GKGCMC 1 cut(s) 939
BseXI GCAGC 4 cut(s) 319, 350, 915, 1015
BsgI GTGCAG 1 cut(s) 786
BshFI GGCC 3 cut(s) 186, 437, 937
BshNI GGYRCC 1 cut(s) 730
BsiHKCI CYCGRG 2 cut(s) 57, 154
BslI CCNNNNNNNGG 6 cut(s) 212, 387, 480, 529, 556, 931
BsmAI GTCTC 4 cut(s) 54, 79, 308, 980
BsmBI CGTCTC 2 cut(s) 54, 980
BsmI GAATGC 1 cut(s) 1013
BsnI GGCC 3 cut(s) 186, 437, 937
Bso31I GGTCTC 1 cut(s) 79
BsoBI CYCGRG 2 cut(s) 57, 154
Bsp120I GGGCCC 1 cut(s) 935
Bsp1286I GDGCHC 1 cut(s) 939
Bsp13I TCCGGA 1 cut(s) 212
Bsp143I GATC 4 cut(s) 559, 603, 680, 708
Bsp19I CCATGG 1 cut(s) 864
BspANI GGCC 3 cut(s) 186, 437, 937
BspCNI CTCAG 4 cut(s) 318, 372, 423, 440
BspEI TCCGGA 1 cut(s) 212
BspLI GGNNCC 4 cut(s) 732, 789, 936, 937
BspMI ACCTGC 3 cut(s) 179, 508, 752
BspPI GGATC 4 cut(s) 567, 598, 688, 716
BspT107I GGYRCC 1 cut(s) 730
BspTI CTTAAG 1 cut(s) 628
BspTNI GGTCTC 1 cut(s) 79
BsrFI RCCGGY 2 cut(s) 92, 924
BsrI ACTGG 1 cut(s) 1070
BssAI RCCGGY 2 cut(s) 92, 924
BssECI CCNNGG 7 cut(s) 154, 181, 607, 864, 932, 981, 1092
BssMI GATC 4 cut(s) 559, 603, 680, 708
BssT1I CCWWGG 3 cut(s) 607, 864, 981
Bst2UI CCWGG 3 cut(s) 182, 514, 792
Bst4CI ACNGT 3 cut(s) 193, 730, 991
Bst6I CTCTTC 2 cut(s) 38, 44
BstAFI CTTAAG 1 cut(s) 628
BstAPI GCANNNNNTGC 1 cut(s) 1017
BstBAI YACGTR 2 cut(s) 477, 951
BstC8I GCNNGC 6 cut(s) 316, 589, 676, 763, 772, 926
BstDEI CTNAG 6 cut(s) 10, 299, 305, 359, 410, 427
BstDSI CCRYGG 1 cut(s) 864
BstEII GGTNACC 1 cut(s) 508
BstF5I GGATG 3 cut(s) 102, 999, 1088
BstH2I RGCGCY 1 cut(s) 816
BstHHI GCGC 3 cut(s) 749, 815, 956
BstKTI GATC 4 cut(s) 562, 606, 683, 711
BstMAI GTCTC 4 cut(s) 54, 79, 308, 980
BstMBI GATC 4 cut(s) 559, 603, 680, 708
BstNI CCWGG 3 cut(s) 182, 514, 792
BstNSI RCATGY 2 cut(s) 1068, 1103
BstPI GGTNACC 1 cut(s) 508
BstSLI GKGCMC 1 cut(s) 939
BstV1I GCAGC 4 cut(s) 319, 350, 915, 1015
BstX2I RGATCY 2 cut(s) 559, 603
BstXI CCANNNNNNTGG 1 cut(s) 871
BstYI RGATCY 2 cut(s) 559, 603
BsuRI GGCC 3 cut(s) 186, 437, 937
BtgI CCRYGG 1 cut(s) 864
BtsCI GGATG 3 cut(s) 102, 999, 1088
BtsI GCAGTG 2 cut(s) 598, 1015
BtsIMutI CAGTG 2 cut(s) 598, 1015
BveI ACCTGC 3 cut(s) 179, 508, 752
Cac8I GCNNGC 6 cut(s) 316, 589, 676, 763, 772, 926
CaiI CAGNNNCTG 1 cut(s) 597
CfoI GCGC 3 cut(s) 749, 815, 956
Cfr10I RCCGGY 2 cut(s) 92, 924
Cfr13I GGNCC 5 cut(s) 184, 520, 874, 935, 936
Cfr9I CCCGGG 1 cut(s) 154
Csp6I GTAC 1 cut(s) 731
CspCI CAANNNNNGTGG 6 cut(s) 436, 471, 805, 840, 1013, 1048
CviAII CATG 4 cut(s) 466, 865, 1065, 1100
CviQI GTAC 1 cut(s) 731
DdeI CTNAG 6 cut(s) 10, 299, 305, 359, 410, 427
DpnI GATC 4 cut(s) 561, 605, 682, 710
DpnII GATC 4 cut(s) 559, 603, 680, 708
DraIII CACNNNGTG 2 cut(s) 477, 951
DrdI GACNNNNNNGTC 1 cut(s) 71
DseDI GACNNNNNNGTC 1 cut(s) 71
EaeI YGGCCR 1 cut(s) 435
Eam1104I CTCTTC 2 cut(s) 38, 44
EarI CTCTTC 2 cut(s) 38, 44
EciI GGCGGA 1 cut(s) 693
Eco130I CCWWGG 3 cut(s) 607, 864, 981
Eco24I GRGCYC 1 cut(s) 939
Eco31I GGTCTC 1 cut(s) 79
Eco47I GGWCC 2 cut(s) 520, 874
Eco72I CACGTG 2 cut(s) 477, 951
Eco88I CYCGRG 2 cut(s) 57, 154
Eco91I GGTNACC 1 cut(s) 508
EcoO109I RGGNCCY 2 cut(s) 184, 935
EcoO65I GGTNACC 1 cut(s) 508
EcoRII CCWGG 3 cut(s) 180, 512, 790
EcoT14I CCWWGG 3 cut(s) 607, 864, 981
EcoT22I ATGCAT 1 cut(s) 1001
EcoT38I GRGCYC 1 cut(s) 939
ErhI CCWWGG 3 cut(s) 607, 864, 981
Esp3I CGTCTC 2 cut(s) 54, 980
FaeI CATG 4 cut(s) 469, 868, 1068, 1103
FatI CATG 4 cut(s) 465, 864, 1064, 1099
FauI CCCGC 1 cut(s) 592
Fnu4HI GCNGC 7 cut(s) 148, 333, 364, 828, 922, 929, 1029
FokI GGATG 3 cut(s) 89, 986, 1075
FriOI GRGCYC 1 cut(s) 939
Fsp4HI GCNGC 7 cut(s) 148, 333, 364, 828, 922, 929, 1029
FspBI CTAG 1 cut(s) 905
FspI TGCGCA 1 cut(s) 748
GlaI GCGC 3 cut(s) 748, 814, 955
GluI GCNGC 7 cut(s) 148, 333, 364, 828, 922, 929, 1029
HaeII RGCGCY 1 cut(s) 816
HaeIII GGCC 3 cut(s) 186, 437, 937
HhaI GCGC 3 cut(s) 749, 815, 956
Hin1II CATG 4 cut(s) 469, 868, 1068, 1103
Hin6I GCGC 3 cut(s) 747, 813, 954
HinP1I GCGC 3 cut(s) 747, 813, 954
HindIII AAGCTT 1 cut(s) 293
HinfI GANTC 6 cut(s) 256, 484, 554, 624, 890, 1106
HphI GGTGA 5 cut(s) 370, 385, 733, 926, 1003
Hpy166II GTNNAC 2 cut(s) 393, 471
Hpy188I TCNGA 7 cut(s) 230, 483, 559, 900, 970, 978, 1127
Hpy188III TCNNGA 6 cut(s) 213, 251, 523, 541, 706, 872
Hpy8I GTNNAC 2 cut(s) 393, 471
HpyAV CCTTC 4 cut(s) 38, 364, 385, 453
HpyCH4III ACNGT 3 cut(s) 193, 730, 991
HpyCH4IV ACGT 2 cut(s) 476, 950
HpyCH4V TGCA 8 cut(s) 174, 314, 458, 591, 774, 803, 999, 1011
HpyF3I CTNAG 6 cut(s) 10, 299, 305, 359, 410, 427
HpySE526I ACGT 2 cut(s) 476, 950
Hsp92II CATG 4 cut(s) 469, 868, 1068, 1103
HspAI GCGC 3 cut(s) 747, 813, 954
Kpn2I TCCGGA 1 cut(s) 212
KpnI GGTACC 1 cut(s) 734
KroI GCCGGC 1 cut(s) 924
KroNI GCCGGC 1 cut(s) 926
Kzo9I GATC 4 cut(s) 559, 603, 680, 708
Lsp1109I GCAGC 4 cut(s) 319, 350, 915, 1015
LweI GCATC 4 cut(s) 783, 891, 986, 1008
MaeI CTAG 1 cut(s) 905
MaeII ACGT 2 cut(s) 476, 950
MaeIII GTNAC 3 cut(s) 120, 508, 859
MalI GATC 4 cut(s) 561, 605, 682, 710
MboI GATC 4 cut(s) 559, 603, 680, 708
MboII GAAGA 4 cut(s) 10, 13, 25, 31
MfeI CAATTG 1 cut(s) 277
MflI RGATCY 2 cut(s) 559, 603
MhlI GDGCHC 1 cut(s) 939
MlsI TGGCCA 1 cut(s) 437
MluCI AATT 3 cut(s) 277, 615, 664
MluNI TGGCCA 1 cut(s) 437
MlyI GAGTC 3 cut(s) 618, 899, 1100
MmeI TCCRAC 2 cut(s) 461, 948
MnlI CCTC 8 cut(s) 47, 293, 297, 368, 419, 436, 523, 749
Mox20I TGGCCA 1 cut(s) 437
Mph1103I ATGCAT 1 cut(s) 1001
MroI TCCGGA 1 cut(s) 212
MroNI GCCGGC 1 cut(s) 924
MscI TGGCCA 1 cut(s) 437
MseI TTAA 1 cut(s) 629
MslI CAYNNNNRTG 2 cut(s) 51, 716
Msp20I TGGCCA 1 cut(s) 437
MspA1I CMGCKG 1 cut(s) 363
MspCI CTTAAG 1 cut(s) 628
MunI CAATTG 1 cut(s) 277
Mva1269I GAATGC 1 cut(s) 1013
MvaI CCWGG 3 cut(s) 182, 514, 792
NaeI GCCGGC 1 cut(s) 926
NciI CCSGG 8 cut(s) 71, 130, 155, 156, 368, 933, 1004, 1094
NcoI CCATGG 1 cut(s) 864
NdeII GATC 4 cut(s) 559, 603, 680, 708
NgoMIV GCCGGC 1 cut(s) 924
NlaIII CATG 4 cut(s) 469, 868, 1068, 1103
NlaIV GGNNCC 4 cut(s) 732, 789, 936, 937
NsbI TGCGCA 1 cut(s) 748
NsiI ATGCAT 1 cut(s) 1001
NspI RCATGY 2 cut(s) 1068, 1103
PaqCI CACCTGC 1 cut(s) 752
PctI GAATGC 1 cut(s) 1013
PdiI GCCGGC 1 cut(s) 926
PfeI GAWTC 3 cut(s) 256, 484, 554
PfoI TCCNGGA 1 cut(s) 1002
PkrI GCNGC 7 cut(s) 149, 334, 365, 829, 923, 930, 1030
PleI GAGTC 3 cut(s) 618, 898, 1100
PmaCI CACGTG 2 cut(s) 477, 951
PmlI CACGTG 2 cut(s) 477, 951
PpsI GAGTC 3 cut(s) 618, 898, 1100
Ppu21I YACGTR 2 cut(s) 477, 951
Psp6I CCWGG 3 cut(s) 180, 512, 790
PspCI CACGTG 2 cut(s) 477, 951
PspEI GGTNACC 1 cut(s) 508
PspGI CCWGG 3 cut(s) 180, 512, 790
PspN4I GGNNCC 4 cut(s) 732, 789, 936, 937
PspOMI GGGCCC 1 cut(s) 935
PspPI GGNCC 5 cut(s) 184, 520, 874, 935, 936
PstNI CAGNNNCTG 1 cut(s) 597
PsuI RGATCY 2 cut(s) 559, 603
PvuII CAGCTG 1 cut(s) 363
RsaI GTAC 1 cut(s) 732
RsaNI GTAC 1 cut(s) 731
RseI CAYNNNNRTG 2 cut(s) 51, 716
SaqAI TTAA 1 cut(s) 629
SatI GCNGC 7 cut(s) 148, 333, 364, 828, 922, 929, 1029
Sau3AI GATC 4 cut(s) 559, 603, 680, 708
Sau96I GGNCC 5 cut(s) 184, 520, 874, 935, 936
SchI GAGTC 3 cut(s) 618, 899, 1100
SduI GDGCHC 1 cut(s) 939
SfaNI GCATC 4 cut(s) 783, 891, 986, 1008
SinI GGWCC 2 cut(s) 520, 874
SmaI CCCGGG 1 cut(s) 156
SmiMI CAYNNNNRTG 2 cut(s) 51, 716
SmlI CTYRAG 2 cut(s) 249, 628
SmoI CTYRAG 2 cut(s) 249, 628
Sse9I AATT 3 cut(s) 277, 615, 664
SspMI CTAG 1 cut(s) 905
StyI CCWWGG 3 cut(s) 607, 864, 981
TaaI ACNGT 3 cut(s) 193, 730, 991
TaiI ACGT 2 cut(s) 479, 953
TaqI TCGA 2 cut(s) 542, 1115
TasI AATT 3 cut(s) 277, 615, 664
TauI GCSGC 3 cut(s) 150, 830, 924
TfiI GAWTC 3 cut(s) 256, 484, 554
Tru1I TTAA 1 cut(s) 629
Tru9I TTAA 1 cut(s) 629
TscAI CASTG 2 cut(s) 598, 1022
TseI GCWGC 4 cut(s) 332, 363, 928, 1028
TspDTI ATGAA 1 cut(s) 594
TspGWI ACGGA 2 cut(s) 67, 542
TspMI CCCGGG 1 cut(s) 154
TspRI CASTG 2 cut(s) 598, 1022
Vha464I CTTAAG 1 cut(s) 628
VpaK11BI GGWCC 2 cut(s) 520, 874
XapI RAATTY 1 cut(s) 615
XceI RCATGY 2 cut(s) 1068, 1103
XcmI CCANNNNNNNNNTGG 2 cut(s) 430, 862
XmaI CCCGGG 1 cut(s) 154
XspI CTAG 1 cut(s) 905
Zsp2I ATGCAT 1 cut(s) 1001
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.