Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008440

Physical Location & Seq

Genomic Coordinates Reverse (-)

19083910 .. 19085776

Gene Structure 1867 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G46495.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1119 bp

ATGACTTTCTCAAAACAACTCTTCCTTTACCTCTTCTTCCTCTTCCCTCTCCTACACGCTTCACACCCACAACAATGCTCTTCCTCCTCATGCGGTCGTGATGATGTCCATGTCCGTTTCCCTTTCTGGTTACTCTCAAAACAGCCTGAGCTCTGTGGCCATGCCGGATTTAATCTCCAATGCACAGCTAGTCCCAAGACAGCTCTCAAGCTTCCTAATTCCGGAACATTTCTTGTCCGAGAGATCGACTATTTAAGCCAGCAGATTCGTCTCTATGACCCTGAAAATTGCTTGGCAAGAAAGCTTTTGACCTTCGACATATCAAGATCTCCTTTCTCTGCTCTCTACCTTGTCAGCTACACGTTCTTGAGCTGTCCTAATGAGGTTGCAAAGTCGTCCAGGTTTGACTCCATCCCATGTCTAGGCAATTCAACGACCTCGTTCTTGGCTACAACTAGTTTGGATCTCGCGAAATCTATGCTGCCTTCTTGTCAGATCGTCAAGACATTAGATGTTCCGGTTTCTCGGCGAGTTATTGCCAAGAAATCAAGATTCTCGACTGATGTCAACGATAAAGACCTTTGGCTGAAATGGGATTCTCCAAGTTGTAGCGATTGTGAGAGGGATTTTTTGAGATGTGGATTCAGAAGCAACACTTCTCTCCAAGTCAAATGCTTCCCTTTTGAAAATTCCGGCTACAACACGGAACCACAAGTGCTTAAGATTATACTCCTGAGCATAATTGGACCGCTCACGATCTTTGCTACTTGTATTGCAGTCGGAGTTTGCACCTCCGAAAGATTCGCTTCCCTGATACAACGCAACGTGGCTATCGCCGCCTTGCAGCCAAACGAGGTTATAGTCACGACGGGTCTTGATGAATCTATAATAGAATCATATAAGAAAACGGAATTAGGAGAGAGTAGAAGATTACCGGGAAATAATGATGATATTGTTTGCCCTATTTGTTTATCGGAGTATGCTAGCAAAGAGACCGTGCGGTGCATACCAGAATGTGATCATTGCTTCCACAGTGAATGTATAGATGTGTGGCTTAAGATTCATGGTTCGTGTCCTCTTTGTCGGAATTCTCCTTCTCCGGCTCGTCAAGCTGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GUB_WAK_bind WAK_assoc zf-RING_2

Protein Analysis

372

Amino Acids

41.59

Weight (kDa)

7.74

Isoelectric Point (pI)

62.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GUB_WAK_bind	PF13947	26 - 93	1.3e-17	Wall-associated receptor kinase galacturonan-binding
zf-rbx1	PF12678	319 - 362	5.7e-07	RING-H2 zinc finger domain
zf-RING_2	PF13639	320 - 362	2.6e-12	Ring finger domain
zf-RING_11	PF17123	320 - 348	1.7e-06	RING-like zinc finger
zf-C3HC4_2	PF13923	320 - 361	1e-05	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008440)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28040 AT2G25410 AT2G46493 AT2G46494 AT2G46495 AT2G46495 AT5G36001 AT5G36001
fragaria_vesca	FvH4_7g16350
malus_domestica	MD07G1148900.v1.1
prunus_persica	Prupe.2G187400_v2.0.a1
pyrus_communis	pycom07g14790
rosa_chinensis	RchiOBHm_Chr1g0359361
rosa_laevigata	RLG00000027876
rosa_multiflora	Rmu_ssc0000358.1_g000002
rosa_roxburghii	Rroxscaffold_4G00297050
rosa_rugosa	Rorug01G0270500
rosa_samantha	Rh1AG283900 Rh1AG284000 Rh1BG250100 Rh1CG268000 Rh1DG279000
rosa_wichuraiana	Rw1G025210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	751
AccII	CGCG	1 cut(s)	470
AccIII	TCCGGA	1 cut(s)	221
AciI	CCGC	4 cut(s)	93, 749, 837, 1000
AclWI	GGATC	1 cut(s)	471
AcoI	YGGCCR	1 cut(s)	157
AcsI	RAATTY	2 cut(s)	688, 1087
AfiI	CCNNNNNNNGG	2 cut(s)	221, 422
AflII	CTTAAG	2 cut(s)	719, 1055
AflIII	ACRYGT	1 cut(s)	360
AgsI	TTSAA	2 cut(s)	432, 686
AhlI	ACTAGT	1 cut(s)	455
AjnI	CCWGG	1 cut(s)	398
AluBI	AGCT	8 cut(s)	151, 188, 203, 211, 304, 357, 372, 1112
AluI	AGCT	8 cut(s)	151, 188, 203, 211, 304, 357, 372, 1112
Alw21I	GWGCWC	1 cut(s)	153
Alw26I	GTCTC	2 cut(s)	275, 986
AlwI	GGATC	1 cut(s)	471
Aor13HI	TCCGGA	1 cut(s)	221
AoxI	GGCC	1 cut(s)	157
ApeKI	GCWGC	2 cut(s)	481, 844
ApoI	RAATTY	2 cut(s)	688, 1087
AspS9I	GGNCC	1 cut(s)	746
AsuC2I	CCSGG	1 cut(s)	936
AsuNHI	GCTAGC	1 cut(s)	983
AvaII	GGWCC	1 cut(s)	746
BalI	TGGCCA	1 cut(s)	159
BanII	GRGCYC	1 cut(s)	153
Bbv12I	GWGCWC	1 cut(s)	153
BbvI	GCAGC	2 cut(s)	468, 856
BccI	CCATC	1 cut(s)	419
BcgI	CGANNNNNNTGC	2 cut(s)	460, 494
BciT130I	CCWGG	1 cut(s)	400
BclI	TGATCA	1 cut(s)	1018
BcnI	CCSGG	1 cut(s)	936
BcoDI	GTCTC	2 cut(s)	275, 986
BcuI	ACTAGT	1 cut(s)	455
BfaI	CTAG	4 cut(s)	189, 422, 456, 984
BfrI	CTTAAG	2 cut(s)	719, 1055
BglII	AGATCT	1 cut(s)	326
BisI	GCNGC	3 cut(s)	482, 837, 845
BlsI	GCNGC	3 cut(s)	483, 838, 846
Bme1390I	CCNGG	2 cut(s)	400, 936
Bme18I	GGWCC	1 cut(s)	746
BmgT120I	GGNCC	1 cut(s)	746
BmiI	GGNNCC	1 cut(s)	708
BmrFI	CCNGG	2 cut(s)	400, 936
BmtI	GCTAGC	1 cut(s)	987
BoxI	GACNNNNGTC	1 cut(s)	563
Bpu10I	CCTNAGC	2 cut(s)	147, 734
BpuEI	CTTGAG	2 cut(s)	191, 388
BpuMI	CCSGG	1 cut(s)	936
BsaI	GGTCTC	1 cut(s)	986
BsaWI	WCCGGW	2 cut(s)	221, 517
Bsc4I	CCNNNNNNNGG	2 cut(s)	221, 422
Bse3DI	GCAATG	1 cut(s)	1021
BseAI	TCCGGA	1 cut(s)	221
BseBI	CCWGG	1 cut(s)	400
BseGI	GGATG	1 cut(s)	411
BseLI	CCNNNNNNNGG	2 cut(s)	221, 422
BseMI	GCAATG	1 cut(s)	1021
BseMII	CTCAG	2 cut(s)	138, 725
BseRI	GAGGAG	1 cut(s)	76
BseXI	GCAGC	2 cut(s)	468, 856
Bsh1236I	CGCG	1 cut(s)	470
Bsh1285I	CGRYCG	1 cut(s)	97
BshFI	GGCC	1 cut(s)	159
BsiEI	CGRYCG	1 cut(s)	97
BsiHKAI	GWGCWC	1 cut(s)	153
BsiSI	CCGG	6 cut(s)	165, 222, 518, 693, 935, 1100
BslFI	GGGAC	1 cut(s)	177
BslI	CCNNNNNNNGG	2 cut(s)	221, 422
BsmAI	GTCTC	2 cut(s)	275, 986
BsmBI	CGTCTC	1 cut(s)	275
BsmFI	GGGAC	1 cut(s)	177
BsnI	GGCC	1 cut(s)	159
Bso31I	GGTCTC	1 cut(s)	986
Bsp1286I	GDGCHC	1 cut(s)	153
Bsp13I	TCCGGA	1 cut(s)	221
Bsp143I	GATC	6 cut(s)	243, 326, 463, 495, 756, 1018
Bsp68I	TCGCGA	1 cut(s)	470
BspACI	CCGC	4 cut(s)	93, 749, 837, 1000
BspANI	GGCC	1 cut(s)	159
BspCNI	CTCAG	2 cut(s)	139, 726
BspEI	TCCGGA	1 cut(s)	221
BspFNI	CGCG	1 cut(s)	470
BspLI	GGNNCC	1 cut(s)	708
BspOI	GCTAGC	1 cut(s)	987
BspPI	GGATC	1 cut(s)	471
BspQI	GCTCTTC	1 cut(s)	85
BspTI	CTTAAG	2 cut(s)	719, 1055
BspTNI	GGTCTC	1 cut(s)	986
BsrBI	CCGCTC	1 cut(s)	751
BsrDI	GCAATG	1 cut(s)	1021
BssMI	GATC	6 cut(s)	243, 326, 463, 495, 756, 1018
Bst2UI	CCWGG	1 cut(s)	400
Bst4CI	ACNGT	2 cut(s)	997, 1034
Bst6I	CTCTTC	4 cut(s)	26, 38, 47, 85
BstAFI	CTTAAG	2 cut(s)	719, 1055
BstC8I	GCNNGC	2 cut(s)	260, 985
BstDEI	CTNAG	2 cut(s)	147, 734
BstF5I	GGATG	1 cut(s)	411
BstFNI	CGCG	1 cut(s)	470
BstKTI	GATC	6 cut(s)	246, 329, 466, 498, 759, 1021
BstMAI	GTCTC	2 cut(s)	275, 986
BstMBI	GATC	6 cut(s)	243, 326, 463, 495, 756, 1018
BstMCI	CGRYCG	1 cut(s)	97
BstMWI	GCNNNNNNNGC	2 cut(s)	836, 1109
BstNI	CCWGG	1 cut(s)	400
BstPAI	GACNNNNGTC	1 cut(s)	563
BstSCI	CCNGG	2 cut(s)	398, 934
BstUI	CGCG	1 cut(s)	470
BstV1I	GCAGC	2 cut(s)	468, 856
BstX2I	RGATCY	2 cut(s)	326, 463
BstYI	RGATCY	2 cut(s)	326, 463
BsuRI	GGCC	1 cut(s)	159
BtsCI	GGATG	1 cut(s)	411
BtsIMutI	CAGTG	1 cut(s)	1039
BtuMI	TCGCGA	1 cut(s)	470
Cac8I	GCNNGC	2 cut(s)	260, 985
Cfr13I	GGNCC	1 cut(s)	746
CviAII	CATG	5 cut(s)	90, 110, 161, 417, 1064
DdeI	CTNAG	2 cut(s)	147, 734
DpnI	GATC	6 cut(s)	245, 328, 465, 497, 758, 1020
DpnII	GATC	6 cut(s)	243, 326, 463, 495, 756, 1018
EaeI	YGGCCR	1 cut(s)	157
Eam1104I	CTCTTC	4 cut(s)	26, 38, 47, 85
EarI	CTCTTC	4 cut(s)	26, 38, 47, 85
Ecl136II	GAGCTC	1 cut(s)	151
Eco24I	GRGCYC	1 cut(s)	153
Eco31I	GGTCTC	1 cut(s)	986
Eco47I	GGWCC	1 cut(s)	746
Eco53kI	GAGCTC	1 cut(s)	151
EcoICRI	GAGCTC	1 cut(s)	151
EcoRI	GAATTC	1 cut(s)	1087
EcoRII	CCWGG	1 cut(s)	398
EcoT38I	GRGCYC	1 cut(s)	153
Esp3I	CGTCTC	1 cut(s)	275
FaeI	CATG	5 cut(s)	93, 113, 164, 420, 1067
FalI	AAGNNNNNCTT	6 cut(s)	316, 348, 640, 672, 790, 822
FaqI	GGGAC	1 cut(s)	177
FatI	CATG	5 cut(s)	89, 109, 160, 416, 1063
FbaI	TGATCA	1 cut(s)	1018
Fnu4HI	GCNGC	3 cut(s)	482, 837, 845
FokI	GGATG	1 cut(s)	398
FriOI	GRGCYC	1 cut(s)	153
Fsp4HI	GCNGC	3 cut(s)	482, 837, 845
FspBI	CTAG	4 cut(s)	189, 422, 456, 984
GluI	GCNGC	3 cut(s)	482, 837, 845
HaeIII	GGCC	1 cut(s)	159
HapII	CCGG	6 cut(s)	165, 222, 518, 693, 935, 1100
Hin1II	CATG	5 cut(s)	93, 113, 164, 420, 1067
HincII	GTYRAC	1 cut(s)	568
HindII	GTYRAC	1 cut(s)	568
HindIII	AAGCTT	2 cut(s)	209, 302
HinfI	GANTC	9 cut(s)	265, 407, 552, 596, 642, 801, 881, 893, 1060
HpaII	CCGG	6 cut(s)	165, 222, 518, 693, 935, 1100
Hpy166II	GTNNAC	1 cut(s)	568
Hpy188I	TCNGA	7 cut(s)	239, 495, 647, 782, 796, 976, 1086
Hpy8I	GTNNAC	1 cut(s)	568
Hpy99I	CGWCG	1 cut(s)	871
HpyAV	CCTTC	3 cut(s)	322, 495, 1104
HpyCH4III	ACNGT	2 cut(s)	997, 1034
HpyCH4IV	ACGT	2 cut(s)	362, 825
HpyCH4V	TGCA	6 cut(s)	183, 389, 776, 789, 844, 1005
HpyF10VI	GCNNNNNNNGC	2 cut(s)	836, 1109
HpyF3I	CTNAG	2 cut(s)	147, 734
HpySE526I	ACGT	2 cut(s)	362, 825
Hsp92II	CATG	5 cut(s)	93, 113, 164, 420, 1067
Kpn2I	TCCGGA	1 cut(s)	221
Ksp22I	TGATCA	1 cut(s)	1018
Kzo9I	GATC	6 cut(s)	243, 326, 463, 495, 756, 1018
LguI	GCTCTTC	1 cut(s)	85
Lsp1109I	GCAGC	2 cut(s)	468, 856
MaeI	CTAG	4 cut(s)	189, 422, 456, 984
MaeII	ACGT	2 cut(s)	362, 825
MaeIII	GTNAC	2 cut(s)	129, 862
MalI	GATC	6 cut(s)	245, 328, 465, 497, 758, 1020
MbiI	CCGCTC	1 cut(s)	751
MboI	GATC	6 cut(s)	243, 326, 463, 495, 756, 1018
MboII	GAAGA	6 cut(s)	13, 25, 28, 34, 72, 939
MflI	RGATCY	2 cut(s)	326, 463
MhlI	GDGCHC	1 cut(s)	153
MlsI	TGGCCA	1 cut(s)	159
MluCI	AATT	7 cut(s)	217, 286, 427, 688, 741, 911, 1087
MluNI	TGGCCA	1 cut(s)	159
MlyI	GAGTC	1 cut(s)	401
MmeI	TCCRAC	2 cut(s)	760, 1064
Mox20I	TGGCCA	1 cut(s)	159
MroI	TCCGGA	1 cut(s)	221
MscI	TGGCCA	1 cut(s)	159
MseI	TTAA	4 cut(s)	171, 254, 720, 1056
MslI	CAYNNNNRTG	1 cut(s)	73
Msp20I	TGGCCA	1 cut(s)	159
MspCI	CTTAAG	2 cut(s)	719, 1055
MspI	CCGG	6 cut(s)	165, 222, 518, 693, 935, 1100
MspR9I	CCNGG	2 cut(s)	400, 936
MvaI	CCWGG	1 cut(s)	400
MvnI	CGCG	1 cut(s)	470
MwoI	GCNNNNNNNGC	2 cut(s)	836, 1109
NciI	CCSGG	1 cut(s)	936
NdeII	GATC	6 cut(s)	243, 326, 463, 495, 756, 1018
NheI	GCTAGC	1 cut(s)	983
NlaIII	CATG	5 cut(s)	93, 113, 164, 420, 1067
NlaIV	GGNNCC	1 cut(s)	708
NmeAIII	GCCGAG	1 cut(s)	505
NmuCI	GTSAC	1 cut(s)	862
NruI	TCGCGA	1 cut(s)	470
PciSI	GCTCTTC	1 cut(s)	85
PfeI	GAWTC	8 cut(s)	265, 552, 596, 642, 801, 881, 893, 1060
PkrI	GCNGC	3 cut(s)	483, 838, 846
PleI	GAGTC	1 cut(s)	401
PpsI	GAGTC	1 cut(s)	401
PshAI	GACNNNNGTC	1 cut(s)	563
Psp124BI	GAGCTC	1 cut(s)	153
Psp6I	CCWGG	1 cut(s)	398
PspGI	CCWGG	1 cut(s)	398
PspN4I	GGNNCC	1 cut(s)	708
PspPI	GGNCC	1 cut(s)	746
PsuI	RGATCY	2 cut(s)	326, 463
RruI	TCGCGA	1 cut(s)	470
RseI	CAYNNNNRTG	1 cut(s)	73
SacI	GAGCTC	1 cut(s)	153
SapI	GCTCTTC	1 cut(s)	85
SaqAI	TTAA	4 cut(s)	171, 254, 720, 1056
SatI	GCNGC	3 cut(s)	482, 837, 845
Sau3AI	GATC	6 cut(s)	243, 326, 463, 495, 756, 1018
Sau96I	GGNCC	1 cut(s)	746
SchI	GAGTC	1 cut(s)	401
ScrFI	CCNGG	2 cut(s)	400, 936
SduI	GDGCHC	1 cut(s)	153
SinI	GGWCC	1 cut(s)	746
SmiMI	CAYNNNNRTG	1 cut(s)	73
SmlI	CTYRAG	4 cut(s)	206, 367, 719, 1055
SmoI	CTYRAG	4 cut(s)	206, 367, 719, 1055
SpeI	ACTAGT	1 cut(s)	455
Sse9I	AATT	7 cut(s)	217, 286, 427, 688, 741, 911, 1087
SsiI	CCGC	4 cut(s)	93, 749, 837, 1000
SspMI	CTAG	4 cut(s)	189, 422, 456, 984
SstI	GAGCTC	1 cut(s)	153
StyD4I	CCNGG	2 cut(s)	398, 934
TaaI	ACNGT	2 cut(s)	997, 1034
TaiI	ACGT	2 cut(s)	365, 828
TaqI	TCGA	3 cut(s)	246, 315, 557
TasI	AATT	7 cut(s)	217, 286, 427, 688, 741, 911, 1087
TauI	GCSGC	1 cut(s)	839
TfiI	GAWTC	8 cut(s)	265, 552, 596, 642, 801, 881, 893, 1060
Tru1I	TTAA	4 cut(s)	171, 254, 720, 1056
Tru9I	TTAA	4 cut(s)	171, 254, 720, 1056
TscAI	CASTG	1 cut(s)	1039
TseFI	GTSAC	1 cut(s)	862
TseI	GCWGC	2 cut(s)	481, 844
Tsp45I	GTSAC	1 cut(s)	862
TspDTI	ATGAA	2 cut(s)	894, 1052
TspGWI	ACGGA	3 cut(s)	104, 719, 923
TspRI	CASTG	1 cut(s)	1039
Vha464I	CTTAAG	2 cut(s)	719, 1055
VpaK11BI	GGWCC	1 cut(s)	746
XapI	RAATTY	2 cut(s)	688, 1087
XspI	CTAG	4 cut(s)	189, 422, 456, 984

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.