Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008440

Physical Location & Seq

Genomic Coordinates Forward (+)

10814393 .. 10815994

Gene Structure 1602 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G25410.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1134 bp

ATGACCTCAAAACTACTTCCTCTCCTCCTCAATCTCATCTTCCTCTTCTTCTTTCCCCTTCTAAACGCATCCGAACAAAAACCTTGCTACAGTTTCTCATGTAGTCAAGAGAGCGTCGTTGCTCGTTTCCCTTTCTCCCTATTCTCCTATCAACCTGAGTCATGCGGCTACTCAGGATTCAACCTCATATGCAAAGATGATGCCAATACTACCTTAAAGCTTCCTAAGTCTGAACCCTTTCTTGTTAAGGAGATCGACTATGAAACACAGCGTATTCGCCTCAACGACCCTGAGAATTGTTTGGCCAGACGACTTCTTAACTTTGACCCTTCAGGATCTCCTTTTTCTTTTCTTCGCTCTCGTAACTACACGTTCTTGATCTGTCCTAAGGAAGCGAACATCACTGCATCCTTCAGAGCTATCGATTGCCTTGGTAATACCACTTCCTCCTTCTTTGTTGTGCAGTTTGAGAATCTCGGTTCGATGCCATCTTCTTGTCACATCTTTAAGATATTACCTCTTCCATTTTCTTGGTTTGTCGCCTACACGACATACCCTGATGGCCAAAACAGTCGAGACATGTGGCTCAAATGGGACTCGCCGGATTGTAGAGATTGTGAGAGGAGAACTAATTCAAGATGTGGATTCAAAAACAATACTTCCCATCAAGTCGAATGCTTCAGTTCTGTTAACCCTGGACTTCACAACACAGGCTTACAAGTACTAAAGATAATGTGCCTCTCCCTAGTCGGACCACTCACCGCCTTGACTTTTTGTGTCGGTCTTGTCATGTGCAGTTCCGAGAGAGTCTCTTCACAGATACAACAAGCAGTGGTTGCACGCCTTTCTGGATCCGTAACGTCGCAGCCAAGCAACGAAGTCGCAAGGATAGGTCTCGATGAGTCTACAATTGAGTCATACAAGAAAGTTGAGCTAGGGGAGAGTAGGAGACTCCCGACCGGGTCAAATGATGTTGTTTGTCCCATTTGTTTGTCGGAATATGCAACCAAAGAAACTGTTAGGTGTTTACCTGAATGTGAACATTGCTTCCATACTGAATGTATTGATGCGTGGCTCAAGTTGCATAGTTCCTGCCCGGTTTGTCGGAGTAATCCATCTCCTTTGCGCGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GUB_WAK_bind WAK_assoc zf-RING_2

Protein Analysis

377

Amino Acids

42.39

Weight (kDa)

6.59

Isoelectric Point (pI)

59.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GUB_WAK_bind	PF13947	29 - 96	1.5e-14	Wall-associated receptor kinase galacturonan-binding
zf-rbx1	PF12678	326 - 369	2.6e-07	RING-H2 zinc finger domain
zf-RING_2	PF13639	327 - 369	1.2e-12	Ring finger domain
zf-RING_11	PF17123	327 - 355	3e-07	RING-like zinc finger
zf-C3HC4_2	PF13923	327 - 368	4.3e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008440)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28040 AT2G25410 AT2G46493 AT2G46494 AT2G46495 AT2G46495 AT5G36001 AT5G36001
fragaria_vesca	FvH4_7g16350
malus_domestica	MD07G1148900.v1.1
prunus_persica	Prupe.2G187400_v2.0.a1
pyrus_communis	pycom07g14790
rosa_chinensis	RchiOBHm_Chr1g0359361
rosa_laevigata	RLG00000027876
rosa_multiflora	Rmu_ssc0000358.1_g000002
rosa_roxburghii	Rroxscaffold_4G00297050
rosa_rugosa	Rorug01G0270500
rosa_samantha	Rh1AG283900 Rh1AG284000 Rh1BG250100 Rh1CG268000 Rh1DG279000
rosa_wichuraiana	Rw1G025210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	905
AccII	CGCG	1 cut(s)	1128
AciI	CCGC	2 cut(s)	165, 762
AclWI	GGATC	3 cut(s)	343, 846, 859
AcoI	YGGCCR	2 cut(s)	303, 562
AcuI	CTGAAG	3 cut(s)	315, 397, 664
AfaI	GTAC	1 cut(s)	723
AflIII	ACRYGT	2 cut(s)	369, 579
AgsI	TTSAA	3 cut(s)	181, 636, 649
AjnI	CCWGG	1 cut(s)	694
AloI	GAACNNNNNNTCC	2 cut(s)	1032, 1064
AluBI	AGCT	3 cut(s)	220, 419, 934
AluI	AGCT	3 cut(s)	220, 419, 934
Alw26I	GTCTC	4 cut(s)	570, 814, 899, 943
AlwI	GGATC	3 cut(s)	343, 846, 859
AoxI	GGCC	2 cut(s)	303, 562
ApeKI	GCWGC	1 cut(s)	865
Asp700I	GAANNNNTTC	2 cut(s)	237, 631
AspLEI	GCGC	1 cut(s)	1128
AspS9I	GGNCC	1 cut(s)	752
AsuC2I	CCSGG	2 cut(s)	961, 1097
AsuHPI	GGTGA	1 cut(s)	751
AvaII	GGWCC	1 cut(s)	752
AxyI	CCTNAGG	1 cut(s)	387
BalI	TGGCCA	2 cut(s)	305, 564
BamHI	GGATCC	1 cut(s)	851
BarI	GAAGNNNNNNTAC	2 cut(s)	427, 459
BbvI	GCAGC	1 cut(s)	877
BccI	CCATC	4 cut(s)	496, 554, 672, 1123
BcgI	CGANNNNNNTGC	2 cut(s)	862, 896
BciT130I	CCWGG	1 cut(s)	696
BcnI	CCSGG	2 cut(s)	961, 1097
BcoDI	GTCTC	4 cut(s)	570, 814, 899, 943
BfaI	CTAG	2 cut(s)	746, 935
BfmI	CTRYAG	1 cut(s)	88
BisI	GCNGC	2 cut(s)	166, 866
BlsI	GCNGC	2 cut(s)	167, 867
BmcAI	AGTACT	1 cut(s)	723
Bme1390I	CCNGG	3 cut(s)	696, 961, 1097
Bme18I	GGWCC	1 cut(s)	752
BmgT120I	GGNCC	1 cut(s)	752
BmiI	GGNNCC	1 cut(s)	853
BmrFI	CCNGG	3 cut(s)	696, 961, 1097
BmsI	GCATC	5 cut(s)	77, 190, 416, 474, 1057
BplI	GAGNNNNNCTC	2 cut(s)	794, 826
BpuEI	CTTGAG	1 cut(s)	1061
BpuMI	CCSGG	2 cut(s)	961, 1097
Bsa29I	ATCGAT	1 cut(s)	423
BsaI	GGTCTC	1 cut(s)	899
BsaJI	CCNNGG	2 cut(s)	430, 694
BsaXI	ACNNNNNCTCC	2 cut(s)	6, 36
Bse21I	CCTNAGG	1 cut(s)	387
Bse3DI	GCAATG	1 cut(s)	1042
BseBI	CCWGG	1 cut(s)	696
BseCI	ATCGAT	1 cut(s)	423
BseDI	CCNNGG	2 cut(s)	430, 694
BseGI	GGATG	2 cut(s)	68, 407
BseMI	GCAATG	1 cut(s)	1042
BseMII	CTCAG	3 cut(s)	147, 186, 282
BseRI	GAGGAG	3 cut(s)	14, 17, 637
BseXI	GCAGC	1 cut(s)	877
BsgI	GTGCAG	2 cut(s)	482, 814
Bsh1236I	CGCG	1 cut(s)	1128
Bsh1285I	CGRYCG	1 cut(s)	960
BshFI	GGCC	2 cut(s)	305, 564
BshVI	ATCGAT	1 cut(s)	423
BsiEI	CGRYCG	1 cut(s)	960
BsiSI	CCGG	3 cut(s)	602, 960, 1097
BslFI	GGGAC	2 cut(s)	608, 966
BsmAI	GTCTC	4 cut(s)	570, 814, 899, 943
BsmFI	GGGAC	2 cut(s)	608, 966
BsmI	GAATGC	1 cut(s)	680
BsnI	GGCC	2 cut(s)	305, 564
Bso31I	GGTCTC	1 cut(s)	899
Bsp143I	GATC	4 cut(s)	252, 335, 378, 851
BspACI	CCGC	2 cut(s)	165, 762
BspANI	GGCC	2 cut(s)	305, 564
BspCNI	CTCAG	3 cut(s)	148, 185, 283
BspDI	ATCGAT	1 cut(s)	423
BspFNI	CGCG	1 cut(s)	1128
BspLI	GGNNCC	1 cut(s)	853
BspPI	GGATC	3 cut(s)	343, 846, 859
BspTNI	GGTCTC	1 cut(s)	899
BsrDI	GCAATG	1 cut(s)	1042
BssECI	CCNNGG	2 cut(s)	430, 694
BssMI	GATC	4 cut(s)	252, 335, 378, 851
BssT1I	CCWWGG	1 cut(s)	430
Bst2UI	CCWGG	1 cut(s)	696
Bst4CI	ACNGT	3 cut(s)	92, 572, 1018
Bst6I	CTCTTC	3 cut(s)	50, 525, 817
BstAPI	GCANNNNNTGC	1 cut(s)	836
BstC8I	GCNNGC	1 cut(s)	841
BstDEI	CTNAG	5 cut(s)	156, 172, 225, 291, 387
BstF5I	GGATG	2 cut(s)	68, 407
BstFNI	CGCG	1 cut(s)	1128
BstHHI	GCGC	1 cut(s)	1128
BstKTI	GATC	4 cut(s)	255, 338, 381, 854
BstMAI	GTCTC	4 cut(s)	570, 814, 899, 943
BstMBI	GATC	4 cut(s)	252, 335, 378, 851
BstMCI	CGRYCG	1 cut(s)	960
BstMWI	GCNNNNNNNGC	2 cut(s)	836, 1081
BstNI	CCWGG	1 cut(s)	696
BstNSI	RCATGY	1 cut(s)	583
BstSCI	CCNGG	3 cut(s)	694, 959, 1095
BstSFI	CTRYAG	1 cut(s)	88
BstUI	CGCG	1 cut(s)	1128
BstV1I	GCAGC	1 cut(s)	877
BstX2I	RGATCY	2 cut(s)	335, 851
BstXI	CCANNNNNNTGG	1 cut(s)	531
BstYI	RGATCY	2 cut(s)	335, 851
Bsu15I	ATCGAT	1 cut(s)	423
Bsu36I	CCTNAGG	1 cut(s)	387
BsuRI	GGCC	2 cut(s)	305, 564
BsuTUI	ATCGAT	1 cut(s)	423
BtsCI	GGATG	2 cut(s)	68, 407
BtsI	GCAGTG	2 cut(s)	402, 837
BtsIMutI	CAGTG	2 cut(s)	402, 837
Cac8I	GCNNGC	1 cut(s)	841
CfoI	GCGC	1 cut(s)	1128
Cfr13I	GGNCC	1 cut(s)	752
ClaI	ATCGAT	1 cut(s)	423
CseI	GACGC	1 cut(s)	103
Csp6I	GTAC	1 cut(s)	722
CviAII	CATG	4 cut(s)	99, 162, 580, 790
CviQI	GTAC	1 cut(s)	722
DdeI	CTNAG	5 cut(s)	156, 172, 225, 291, 387
DpnI	GATC	4 cut(s)	254, 337, 380, 853
DpnII	GATC	4 cut(s)	252, 335, 378, 851
EaeI	YGGCCR	2 cut(s)	303, 562
Eam1104I	CTCTTC	3 cut(s)	50, 525, 817
EarI	CTCTTC	3 cut(s)	50, 525, 817
Eco130I	CCWWGG	1 cut(s)	430
Eco31I	GGTCTC	1 cut(s)	899
Eco47I	GGWCC	1 cut(s)	752
Eco57I	CTGAAG	3 cut(s)	315, 397, 664
Eco81I	CCTNAGG	1 cut(s)	387
EcoRII	CCWGG	1 cut(s)	694
EcoT14I	CCWWGG	1 cut(s)	430
ErhI	CCWWGG	1 cut(s)	430
FaeI	CATG	4 cut(s)	102, 165, 583, 793
FaqI	GGGAC	2 cut(s)	608, 966
FatI	CATG	4 cut(s)	98, 161, 579, 789
FauNDI	CATATG	1 cut(s)	188
FblI	GTMKAC	1 cut(s)	905
Fnu4HI	GCNGC	2 cut(s)	166, 866
FokI	GGATG	2 cut(s)	55, 394
Fsp4HI	GCNGC	2 cut(s)	166, 866
FspBI	CTAG	2 cut(s)	746, 935
GlaI	GCGC	1 cut(s)	1127
GluI	GCNGC	2 cut(s)	166, 866
HaeIII	GGCC	2 cut(s)	305, 564
HapII	CCGG	3 cut(s)	602, 960, 1097
HgaI	GACGC	1 cut(s)	103
HhaI	GCGC	1 cut(s)	1128
Hin1II	CATG	4 cut(s)	102, 165, 583, 793
Hin6I	GCGC	1 cut(s)	1126
HinP1I	GCGC	1 cut(s)	1126
HincII	GTYRAC	1 cut(s)	691
HindII	GTYRAC	1 cut(s)	691
HindIII	AAGCTT	1 cut(s)	218
HinfI	GANTC	9 cut(s)	158, 177, 472, 596, 645, 807, 902, 914, 951
HpaI	GTTAAC	1 cut(s)	691
HpaII	CCGG	3 cut(s)	602, 960, 1097
HphI	GGTGA	1 cut(s)	751
Hpy166II	GTNNAC	4 cut(s)	691, 906, 1028, 1040
Hpy188I	TCNGA	7 cut(s)	73, 232, 416, 752, 802, 997, 1107
Hpy188III	TCNNGA	9 cut(s)	107, 174, 333, 376, 575, 636, 849, 896, 955
Hpy8I	GTNNAC	4 cut(s)	691, 906, 1028, 1040
Hpy99I	CGWCG	2 cut(s)	119, 865
HpyAV	CCTTC	4 cut(s)	68, 339, 421, 460
HpyCH4III	ACNGT	3 cut(s)	92, 572, 1018
HpyCH4IV	ACGT	2 cut(s)	371, 860
HpyCH4V	TGCA	7 cut(s)	192, 407, 463, 795, 839, 1004, 1084
HpyF10VI	GCNNNNNNNGC	2 cut(s)	836, 1081
HpyF3I	CTNAG	5 cut(s)	156, 172, 225, 291, 387
HpySE526I	ACGT	2 cut(s)	371, 860
Hsp92II	CATG	4 cut(s)	102, 165, 583, 793
HspAI	GCGC	1 cut(s)	1126
KspAI	GTTAAC	1 cut(s)	691
Kzo9I	GATC	4 cut(s)	252, 335, 378, 851
Lsp1109I	GCAGC	1 cut(s)	877
LweI	GCATC	5 cut(s)	77, 190, 416, 474, 1057
MaeI	CTAG	2 cut(s)	746, 935
MaeII	ACGT	2 cut(s)	371, 860
MaeIII	GTNAC	3 cut(s)	362, 497, 856
MalI	GATC	4 cut(s)	254, 337, 380, 853
MboI	GATC	4 cut(s)	252, 335, 378, 851
MboII	GAAGA	7 cut(s)	31, 37, 40, 344, 483, 512, 804
MfeI	CAATTG	1 cut(s)	909
MflI	RGATCY	2 cut(s)	335, 851
MlsI	TGGCCA	2 cut(s)	305, 564
MluCI	AATT	3 cut(s)	295, 631, 909
MluNI	TGGCCA	2 cut(s)	305, 564
MlyI	GAGTC	6 cut(s)	167, 590, 816, 911, 923, 945
MmeI	TCCRAC	3 cut(s)	730, 975, 1085
Mox20I	TGGCCA	2 cut(s)	305, 564
MroXI	GAANNNNTTC	2 cut(s)	237, 631
MscI	TGGCCA	2 cut(s)	305, 564
MseI	TTAA	5 cut(s)	215, 246, 318, 507, 690
Msp20I	TGGCCA	2 cut(s)	305, 564
MspI	CCGG	3 cut(s)	602, 960, 1097
MspR9I	CCNGG	3 cut(s)	696, 961, 1097
MunI	CAATTG	1 cut(s)	909
Mva1269I	GAATGC	1 cut(s)	680
MvaI	CCWGG	1 cut(s)	696
MvnI	CGCG	1 cut(s)	1128
MwoI	GCNNNNNNNGC	2 cut(s)	836, 1081
NciI	CCSGG	2 cut(s)	961, 1097
NdeI	CATATG	1 cut(s)	188
NdeII	GATC	4 cut(s)	252, 335, 378, 851
NlaIII	CATG	4 cut(s)	102, 165, 583, 793
NlaIV	GGNNCC	1 cut(s)	853
NmuCI	GTSAC	1 cut(s)	497
NspI	RCATGY	1 cut(s)	583
PciI	ACATGT	1 cut(s)	579
PctI	GAATGC	1 cut(s)	680
PdmI	GAANNNNTTC	2 cut(s)	237, 631
PfeI	GAWTC	3 cut(s)	177, 472, 645
PflFI	GACNNNGTC	1 cut(s)	961
PkrI	GCNGC	2 cut(s)	167, 867
PleI	GAGTC	6 cut(s)	166, 590, 815, 910, 922, 945
PpsI	GAGTC	6 cut(s)	166, 590, 815, 910, 922, 945
PscI	ACATGT	1 cut(s)	579
Psp6I	CCWGG	1 cut(s)	694
PspGI	CCWGG	1 cut(s)	694
PspN4I	GGNNCC	1 cut(s)	853
PspPI	GGNCC	1 cut(s)	752
PsuI	RGATCY	2 cut(s)	335, 851
PsyI	GACNNNGTC	1 cut(s)	961
RsaI	GTAC	1 cut(s)	723
RsaNI	GTAC	1 cut(s)	722
SaqAI	TTAA	5 cut(s)	215, 246, 318, 507, 690
SatI	GCNGC	2 cut(s)	166, 866
Sau3AI	GATC	4 cut(s)	252, 335, 378, 851
Sau96I	GGNCC	1 cut(s)	752
ScaI	AGTACT	1 cut(s)	723
SchI	GAGTC	6 cut(s)	167, 590, 816, 911, 923, 945
ScrFI	CCNGG	3 cut(s)	696, 961, 1097
SfaNI	GCATC	5 cut(s)	77, 190, 416, 474, 1057
SfcI	CTRYAG	1 cut(s)	88
SinI	GGWCC	1 cut(s)	752
SmlI	CTYRAG	1 cut(s)	1076
SmoI	CTYRAG	1 cut(s)	1076
Sse9I	AATT	3 cut(s)	295, 631, 909
SsiI	CCGC	2 cut(s)	165, 762
SspMI	CTAG	2 cut(s)	746, 935
StyD4I	CCNGG	3 cut(s)	694, 959, 1095
StyI	CCWWGG	1 cut(s)	430
TaaI	ACNGT	3 cut(s)	92, 572, 1018
TaiI	ACGT	2 cut(s)	374, 863
TaqI	TCGA	6 cut(s)	255, 423, 482, 574, 672, 897
TaqII	GACCGA	1 cut(s)	770
TasI	AATT	3 cut(s)	295, 631, 909
TatI	WGTACW	1 cut(s)	721
TauI	GCSGC	1 cut(s)	168
TfiI	GAWTC	3 cut(s)	177, 472, 645
Tru1I	TTAA	5 cut(s)	215, 246, 318, 507, 690
Tru9I	TTAA	5 cut(s)	215, 246, 318, 507, 690
TscAI	CASTG	2 cut(s)	409, 837
TseFI	GTSAC	1 cut(s)	497
TseI	GCWGC	1 cut(s)	865
Tsp45I	GTSAC	1 cut(s)	497
TspDTI	ATGAA	1 cut(s)	276
TspGWI	ACGGA	1 cut(s)	844
TspRI	CASTG	2 cut(s)	409, 837
Tth111I	GACNNNGTC	1 cut(s)	961
VpaK11BI	GGWCC	1 cut(s)	752
XceI	RCATGY	1 cut(s)	583
XmiI	GTMKAC	1 cut(s)	905
XmnI	GAANNNNTTC	2 cut(s)	237, 631
XspI	CTAG	2 cut(s)	746, 935
ZrmI	AGTACT	1 cut(s)	723

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.