Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0008440

Physical Location & Seq

Genomic Coordinates Reverse (-)

38316563 .. 38319612

Gene Structure 3050 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0270500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGCAAGTCGACGATAACCTAAACCGGCTTCAATCTCTTCTCTTCGGAACCGAACTCGCCGCCGAGAGAAAAGACTTCTCCTCCGCTCAGATCTGCAGTCTTCGTCCCACAGTCCCACTCGATCTCAGCTCGACCATGCTTTCGTCAGCCTTATTCTCCGCAAAGCCGTCTCCAAGCTCAATGAGGCTAGTTGTCCGCACATTTCTGATTCCGATTGTGGGTTTGCCTTGGAATCCTTGGATTGTTGATTATGGATTTTGGGAACGGCTGAATGTTCTAATGGAGTCTAAAGATGGTAAAAAGTCTAGCAGTGGTAAATCCTTATTCTACGAAGCACCTCTCGGATACAGCATTAATGAAGACGTTCGACCCAACGGTGGAATCAAGAAGTTCAGATCTGCTGCGTACTCCAACGGTCTCTTCTTGGGTTCTTTTGGAGCTGCAAATGACGAGGAAGAACTGAACAGGTTGAACATTACTCACATTTTGACAGTGGGTAGTGCAATGCCTCCTGCATATCCAAATGATTTTGTCTATAAGGTTTTAAAAGATGGGAACATTCTTCTGTGCTGTGGTGAAATAAGGGCAATGATGGCTTTGCTTCGAAATCTTGATCATTGCATCTCAAGCTATTCATCTGTTATACGAAATTCTGAGATAGAGGATGCAGAGGAATGCTTCAAACTTTTTTCTTTGGATGAGGCGGCTAAATTTGACGATGTGACCCTTGCCAATGTGAACAACTTCAAAAAGCGCTCAAAAAGCCAATCACCTAATGCAATCCACAAAGAATATATAGTGCTTACAATTCTGGTGGCTACTGATGGAGAACAGAAGTTGCCCACCATCAGTGGCACTCGTGACTTGAAGAAAGCATTACATAAACTTGGAGCACTTGCAAGTTTCTCCTTTAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GUB_WAK_bind WAK_assoc zf-RING_2

Protein Analysis

305

Amino Acids

33.82

Weight (kDa)

7.61

Isoelectric Point (pI)

46.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FIGL1_N	PF24347	2 - 35	2.3e-11	FIGL1 N-terminal domain
AdoMetDC_leader	PF08132	94 - 138	3.9e-22	S-adenosyl-l-methionine decarboxylase leader peptide
DUF1517	PF07466	196 - 301	6.7e-21	Protein of unknown function (DUF1517)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0008440)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28040 AT2G25410 AT2G46493 AT2G46494 AT2G46495 AT2G46495 AT5G36001 AT5G36001
fragaria_vesca	FvH4_7g16350
malus_domestica	MD07G1148900.v1.1
prunus_persica	Prupe.2G187400_v2.0.a1
pyrus_communis	pycom07g14790
rosa_chinensis	RchiOBHm_Chr1g0359361
rosa_laevigata	RLG00000027876
rosa_multiflora	Rmu_ssc0000358.1_g000002
rosa_roxburghii	Rroxscaffold_4G00297050
rosa_rugosa	Rorug01G0270500
rosa_samantha	Rh1AG283900 Rh1AG284000 Rh1BG250100 Rh1CG268000 Rh1DG279000
rosa_wichuraiana	Rw1G025210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	86
AccI	GTMKAC	1 cut(s)	9
AciI	CCGC	5 cut(s)	60, 84, 159, 196, 704
AcsI	RAATTY	2 cut(s)	649, 710
AfaI	GTAC	1 cut(s)	407
AfeI	AGCGCT	1 cut(s)	755
AfiI	CCNNNNNNNGG	2 cut(s)	218, 377
AgsI	TTSAA	5 cut(s)	32, 472, 682, 748, 868
AjuI	GAANNNNNNNTTGG	2 cut(s)	404, 436
AluBI	AGCT	4 cut(s)	129, 177, 440, 630
AluI	AGCT	4 cut(s)	129, 177, 440, 630
Alw21I	GWGCWC	1 cut(s)	895
Alw26I	GTCTC	2 cut(s)	174, 422
Aor51HI	AGCGCT	1 cut(s)	755
ApeKI	GCWGC	2 cut(s)	401, 440
ApoI	RAATTY	2 cut(s)	649, 710
ArsI	GACNNNNNNTTYG	2 cut(s)	124, 156
AseI	ATTAAT	1 cut(s)	354
Asp700I	GAANNNNTTC	2 cut(s)	363, 743
AspLEI	GCGC	1 cut(s)	756
AsuHPI	GGTGA	2 cut(s)	587, 762
AsuII	TTCGAA	1 cut(s)	604
BauI	CACGAG	1 cut(s)	858
BbsI	GAAGAC	2 cut(s)	92, 366
Bbv12I	GWGCWC	1 cut(s)	895
BbvI	GCAGC	2 cut(s)	388, 427
BccI	CCATC	5 cut(s)	287, 545, 586, 818, 854
BceAI	ACGGC	2 cut(s)	151, 281
BciVI	GTATCC	1 cut(s)	338
BclI	TGATCA	1 cut(s)	613
BcoDI	GTCTC	2 cut(s)	174, 422
BfaI	CTAG	2 cut(s)	188, 306
BfmI	CTRYAG	1 cut(s)	94
BfoI	RGCGCY	1 cut(s)	757
BfuI	GTATCC	1 cut(s)	338
BglII	AGATCT	2 cut(s)	90, 395
BisI	GCNGC	4 cut(s)	60, 402, 441, 705
BlsI	GCNGC	4 cut(s)	61, 403, 442, 706
BmiI	GGNNCC	1 cut(s)	49
BmsI	GCATC	2 cut(s)	630, 655
BpiI	GAAGAC	2 cut(s)	92, 366
Bpu14I	TTCGAA	1 cut(s)	604
BpuEI	CTTGAG	1 cut(s)	610
BsaI	GGTCTC	1 cut(s)	422
BsaJI	CCNNGG	2 cut(s)	227, 236
BsaXI	ACNNNNNCTCC	2 cut(s)	65, 95
Bsc4I	CCNNNNNNNGG	2 cut(s)	218, 377
Bse118I	RCCGGY	1 cut(s)	24
Bse3DI	GCAATG	3 cut(s)	510, 594, 616
BseDI	CCNNGG	2 cut(s)	227, 236
BseGI	GGATG	2 cut(s)	670, 703
BseLI	CCNNNNNNNGG	2 cut(s)	218, 377
BseMI	GCAATG	3 cut(s)	510, 594, 616
BseMII	CTCAG	3 cut(s)	101, 139, 645
BseRI	GAGGAG	1 cut(s)	70
BseXI	GCAGC	2 cut(s)	388, 427
BsiHKAI	GWGCWC	1 cut(s)	895
BsiSI	CCGG	1 cut(s)	25
BslFI	GGGAC	2 cut(s)	90, 98
BslI	CCNNNNNNNGG	2 cut(s)	218, 377
BsmAI	GTCTC	2 cut(s)	174, 422
BsmBI	CGTCTC	1 cut(s)	174
BsmFI	GGGAC	2 cut(s)	90, 98
BsmI	GAATGC	1 cut(s)	680
Bso31I	GGTCTC	1 cut(s)	422
Bsp119I	TTCGAA	1 cut(s)	604
Bsp1286I	GDGCHC	1 cut(s)	895
Bsp143I	GATC	4 cut(s)	90, 121, 395, 613
BspACI	CCGC	5 cut(s)	60, 84, 159, 196, 704
BspCNI	CTCAG	3 cut(s)	100, 138, 646
BspLI	GGNNCC	1 cut(s)	49
BspMAI	CTGCAG	1 cut(s)	98
BspT104I	TTCGAA	1 cut(s)	604
BspTNI	GGTCTC	1 cut(s)	422
BsrBI	CCGCTC	1 cut(s)	86
BsrDI	GCAATG	3 cut(s)	510, 594, 616
BsrFI	RCCGGY	1 cut(s)	24
BssAI	RCCGGY	1 cut(s)	24
BssECI	CCNNGG	2 cut(s)	227, 236
BssMI	GATC	4 cut(s)	90, 121, 395, 613
BssSI	CACGAG	1 cut(s)	858
BssT1I	CCWWGG	2 cut(s)	227, 236
Bst2BI	CACGAG	1 cut(s)	858
Bst4CI	ACNGT	4 cut(s)	112, 377, 416, 493
Bst6I	CTCTTC	3 cut(s)	42, 47, 425
BstBI	TTCGAA	1 cut(s)	604
BstDEI	CTNAG	3 cut(s)	87, 125, 654
BstF5I	GGATG	2 cut(s)	670, 703
BstH2I	RGCGCY	1 cut(s)	757
BstHHI	GCGC	1 cut(s)	756
BstKTI	GATC	4 cut(s)	93, 124, 398, 616
BstMAI	GTCTC	2 cut(s)	174, 422
BstMBI	GATC	4 cut(s)	90, 121, 395, 613
BstMWI	GCNNNNNNNGC	3 cut(s)	593, 627, 762
BstSFI	CTRYAG	1 cut(s)	94
BstV1I	GCAGC	2 cut(s)	388, 427
BstV2I	GAAGAC	2 cut(s)	92, 366
BstX2I	RGATCY	2 cut(s)	90, 395
BstYI	RGATCY	2 cut(s)	90, 395
BsuI	GTATCC	1 cut(s)	338
BtsCI	GGATG	2 cut(s)	670, 703
BtsI	GCAGTG	1 cut(s)	316
BtsIMutI	CAGTG	3 cut(s)	316, 498, 856
CfoI	GCGC	1 cut(s)	756
Cfr10I	RCCGGY	1 cut(s)	24
Csp6I	GTAC	1 cut(s)	406
CspCI	CAANNNNNGTGG	2 cut(s)	795, 830
CviAII	CATG	1 cut(s)	136
CviQI	GTAC	1 cut(s)	406
DdeI	CTNAG	3 cut(s)	87, 125, 654
DpnI	GATC	4 cut(s)	92, 123, 397, 615
DpnII	GATC	4 cut(s)	90, 121, 395, 613
DraI	TTTAAA	1 cut(s)	546
Eam1104I	CTCTTC	3 cut(s)	42, 47, 425
EarI	CTCTTC	3 cut(s)	42, 47, 425
Eco130I	CCWWGG	2 cut(s)	227, 236
Eco31I	GGTCTC	1 cut(s)	422
Eco47III	AGCGCT	1 cut(s)	755
EcoT14I	CCWWGG	2 cut(s)	227, 236
ErhI	CCWWGG	2 cut(s)	227, 236
Esp3I	CGTCTC	1 cut(s)	174
FaeI	CATG	1 cut(s)	139
FaiI	YATR	8 cut(s)	137, 252, 517, 537, 644, 795, 797, 882
FaqI	GGGAC	2 cut(s)	90, 98
FatI	CATG	1 cut(s)	135
FbaI	TGATCA	1 cut(s)	613
FblI	GTMKAC	1 cut(s)	9
Fnu4HI	GCNGC	4 cut(s)	60, 402, 441, 705
FokI	GGATG	2 cut(s)	677, 710
Fsp4HI	GCNGC	4 cut(s)	60, 402, 441, 705
FspBI	CTAG	2 cut(s)	188, 306
GlaI	GCGC	1 cut(s)	755
GluI	GCNGC	4 cut(s)	60, 402, 441, 705
HaeII	RGCGCY	1 cut(s)	757
HapII	CCGG	1 cut(s)	25
HhaI	GCGC	1 cut(s)	756
Hin1II	CATG	1 cut(s)	139
Hin6I	GCGC	1 cut(s)	754
HinP1I	GCGC	1 cut(s)	754
HincII	GTYRAC	1 cut(s)	10
HindII	GTYRAC	1 cut(s)	10
HinfI	GANTC	4 cut(s)	208, 232, 284, 381
HpaII	CCGG	1 cut(s)	25
HphI	GGTGA	2 cut(s)	587, 762
Hpy166II	GTNNAC	2 cut(s)	10, 739
Hpy188I	TCNGA	7 cut(s)	47, 90, 207, 213, 344, 395, 655
Hpy188III	TCNNGA	3 cut(s)	385, 611, 860
Hpy8I	GTNNAC	2 cut(s)	10, 739
Hpy99I	CGWCG	1 cut(s)	14
HpyCH4III	ACNGT	4 cut(s)	112, 377, 416, 493
HpyCH4IV	ACGT	1 cut(s)	363
HpyCH4V	TGCA	9 cut(s)	4, 96, 443, 503, 515, 621, 668, 779, 899
HpyF10VI	GCNNNNNNNGC	3 cut(s)	593, 627, 762
HpyF3I	CTNAG	3 cut(s)	87, 125, 654
HpySE526I	ACGT	1 cut(s)	363
Hsp92II	CATG	1 cut(s)	139
HspAI	GCGC	1 cut(s)	754
Ksp22I	TGATCA	1 cut(s)	613
Kzo9I	GATC	4 cut(s)	90, 121, 395, 613
LmnI	GCTCC	2 cut(s)	437, 890
LpnPI	CCDG	4 cut(s)	38, 451, 525, 797
Lsp1109I	GCAGC	2 cut(s)	388, 427
LweI	GCATC	2 cut(s)	630, 655
MaeI	CTAG	2 cut(s)	188, 306
MaeII	ACGT	1 cut(s)	363
MaeIII	GTNAC	2 cut(s)	721, 860
MalI	GATC	4 cut(s)	92, 123, 397, 615
MbiI	CCGCTC	1 cut(s)	86
MboI	GATC	4 cut(s)	90, 121, 395, 613
MboII	GAAGA	8 cut(s)	29, 34, 92, 371, 412, 467, 554, 880
MflI	RGATCY	2 cut(s)	90, 395
MhlI	GDGCHC	1 cut(s)	895
MluCI	AATT	3 cut(s)	649, 710, 807
MlyI	GAGTC	1 cut(s)	293
MmeI	TCCRAC	1 cut(s)	435
MnlI	CCTC	8 cut(s)	91, 177, 348, 445, 519, 655, 664, 694
MroXI	GAANNNNTTC	2 cut(s)	363, 743
MseI	TTAA	2 cut(s)	354, 545
MspI	CCGG	1 cut(s)	25
Mva1269I	GAATGC	1 cut(s)	680
MwoI	GCNNNNNNNGC	3 cut(s)	593, 627, 762
NdeII	GATC	4 cut(s)	90, 121, 395, 613
NlaIII	CATG	1 cut(s)	139
NlaIV	GGNNCC	1 cut(s)	49
NmeAIII	GCCGAG	1 cut(s)	88
NmuCI	GTSAC	2 cut(s)	721, 860
NspV	TTCGAA	1 cut(s)	604
PctI	GAATGC	1 cut(s)	680
PdmI	GAANNNNTTC	2 cut(s)	363, 743
PfeI	GAWTC	3 cut(s)	208, 232, 381
PkrI	GCNGC	4 cut(s)	61, 403, 442, 706
PleI	GAGTC	1 cut(s)	292
PpsI	GAGTC	1 cut(s)	292
PshBI	ATTAAT	1 cut(s)	354
PspN4I	GGNNCC	1 cut(s)	49
PstI	CTGCAG	1 cut(s)	98
PsuI	RGATCY	2 cut(s)	90, 395
RsaI	GTAC	1 cut(s)	407
RsaNI	GTAC	1 cut(s)	406
SalI	GTCGAC	1 cut(s)	8
SaqAI	TTAA	2 cut(s)	354, 545
SatI	GCNGC	4 cut(s)	60, 402, 441, 705
Sau3AI	GATC	4 cut(s)	90, 121, 395, 613
SchI	GAGTC	1 cut(s)	293
SduI	GDGCHC	1 cut(s)	895
SfaNI	GCATC	2 cut(s)	630, 655
SfcI	CTRYAG	1 cut(s)	94
SfuI	TTCGAA	1 cut(s)	604
SmlI	CTYRAG	1 cut(s)	625
SmoI	CTYRAG	1 cut(s)	625
Sse9I	AATT	3 cut(s)	649, 710, 807
SsiI	CCGC	5 cut(s)	60, 84, 159, 196, 704
SspMI	CTAG	2 cut(s)	188, 306
StyI	CCWWGG	2 cut(s)	227, 236
TaaI	ACNGT	4 cut(s)	112, 377, 416, 493
TaiI	ACGT	1 cut(s)	366
TaqI	TCGA	5 cut(s)	9, 120, 131, 367, 604
TasI	AATT	3 cut(s)	649, 710, 807
TauI	GCSGC	2 cut(s)	62, 707
TfiI	GAWTC	3 cut(s)	208, 232, 381
Tru1I	TTAA	2 cut(s)	354, 545
Tru9I	TTAA	2 cut(s)	354, 545
TscAI	CASTG	3 cut(s)	316, 498, 856
TseFI	GTSAC	2 cut(s)	721, 860
TseI	GCWGC	2 cut(s)	401, 440
Tsp45I	GTSAC	2 cut(s)	721, 860
TspDTI	ATGAA	2 cut(s)	372, 624
TspRI	CASTG	3 cut(s)	316, 498, 856
VspI	ATTAAT	1 cut(s)	354
XapI	RAATTY	2 cut(s)	649, 710
XmiI	GTMKAC	1 cut(s)	9
XmnI	GAANNNNTTC	2 cut(s)	363, 743
XspI	CTAG	2 cut(s)	188, 306

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.