AT5G36001
ERF Family

BEST Arabidopsis thaliana protein match is Ring U-Box superfamily protein (TAIR

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0008440
Physical Location & Seq
Forward (+)
14141641 .. 14143436
1796 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G36001.2

Sequence Viewer

Length: 969 bp
ATGACTTTCTCAAAACAATTCCCTCTTCTTCTCTATTTCTTCTTCTTCTTCTACTTTCCTCTCCTAAATGCCTCAAAACCAAAACGTTGCTACAGTTCTTCATGTGGAGGAAACAACCTTGACGTTAGCTTCCCTTTCTGGCTATCTCCTGAGCAATCTTCGTCATGTGACTACCCAGGATTCAACCTCCATTGTGAGACAGCCTTAAAGCTTCCAAATTCCAGACGATTTCTCGTCCAAGACATAAAGTCGCAGCGTATTCACCTTAGAGACCCCGATAACTGCTTAGCCAGACGGCTTCTCAGCTTCGACGCTTCAATGTCTCCTTTTTCTCCTCTTCACCTTGTCAACTACACTTTCTTGAGCTGTCATAACGAAAACGTCAAATCCTCTTCTTTGGAACCCATCCATTGCCTTACTAATTCCACACCTTCAGATCTCACCGGTTCAATGCCGTCCTCTTGTCAAACCTTGAAGACACTACTTCTTCCGGTCTCTTCACCACTCGCAGGTGATCTCAACAAACAAGACCTCTGGCTGAAATGGGACTCACCGGATTGCACAGGTTGTGTTGATTTTAGTCCGTTATGTAGCTTCATAAACAATACCATCCTCAAAGTCAAATGCTTCACATACGTTGATTCTGGAAACCCTTGGTTAATAACGTTAAAGATATTATGCTTATGCCTATCCGTACCATTCTTCATAGTGATAACTCCTGCCGTCTGTATCATTTTTATCCCAATCCAACAACAAGCCAAGAGTGTCCCTTGGCGAAATGACACTCTCTGTCCCATTTGTTTATCAGAATACACAAGTGAAGAGACCGTTAAGTGCTTACCCGAATGTGAACATTGCTTCCACACCGAATGCATCGACCCGTGGCTCAAGTTGCATAACTCTTGTCCGGTTTGTCGGAATTCGCCTTCATCTTTGCCAAATAAAGCTGCCACGACGAACGTTGTCTAG

Protein Analysis

322

Amino Acids

36.28

Weight (kDa)

7.0

Isoelectric Point (pI)

71.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GUB_WAK_bind PF13947 30 - 86 2.4e-13 Wall-associated receptor kinase galacturonan-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0008440)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G28040 AT2G25410 AT2G46493 AT2G46494 AT2G46495 AT2G46495 AT5G36001 AT5G36001
fragaria_vesca FvH4_7g16350
malus_domestica MD07G1148900.v1.1
prunus_persica Prupe.2G187400_v2.0.a1
pyrus_communis pycom07g14790
rosa_chinensis RchiOBHm_Chr1g0359361
rosa_laevigata RLG00000027876
rosa_multiflora Rmu_ssc0000358.1_g000002
rosa_roxburghii Rroxscaffold_4G00297050
rosa_rugosa Rorug01G0270500
rosa_samantha Rh1AG283900 Rh1AG284000 Rh1BG250100 Rh1CG268000 Rh1DG279000
rosa_wichuraiana Rw1G025210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 500
Acc36I ACCTGC 1 cut(s) 500
AclI AACGTT 3 cut(s) 85, 665, 960
AcsI RAATTY 2 cut(s) 217, 919
AcuI CTGAAG 1 cut(s) 417
AfaI GTAC 1 cut(s) 696
AfiI CCNNNNNNNGG 1 cut(s) 509
AgeI ACCGGT 1 cut(s) 443
AgsI TTSAA 4 cut(s) 184, 318, 450, 475
AhdI GACNNNNNGTC 1 cut(s) 247
AjnI CCWGG 1 cut(s) 175
AloI GAACNNNNNNTCC 2 cut(s) 843, 875
AluBI AGCT 6 cut(s) 129, 211, 306, 366, 594, 947
AluI AGCT 6 cut(s) 129, 211, 306, 366, 594, 947
Alw26I GTCTC 5 cut(s) 191, 264, 327, 499, 818
ApeKI GCWGC 2 cut(s) 253, 947
ApoI RAATTY 2 cut(s) 217, 919
AsiGI ACCGGT 1 cut(s) 443
AsuHPI GGTGA 6 cut(s) 254, 332, 433, 492, 524, 543
BbsI GAAGAC 1 cut(s) 482
BbvI GCAGC 2 cut(s) 265, 934
BccI CCATC 2 cut(s) 413, 617
BceAI ACGGC 3 cut(s) 311, 439, 707
BciT130I CCWGG 1 cut(s) 177
BcoDI GTCTC 5 cut(s) 191, 264, 327, 499, 818
BfaI CTAG 1 cut(s) 967
BfmI CTRYAG 1 cut(s) 91
BfuAI ACCTGC 1 cut(s) 500
BglII AGATCT 1 cut(s) 436
BisI GCNGC 2 cut(s) 254, 948
BlpI GCTNAGC 1 cut(s) 286
BlsI GCNGC 2 cut(s) 255, 949
Bme1390I CCNGG 1 cut(s) 177
BmeRI GACNNNNNGTC 1 cut(s) 247
BmiI GGNNCC 1 cut(s) 402
BmrFI CCNGG 1 cut(s) 177
BmsI GCATC 1 cut(s) 882
BpiI GAAGAC 1 cut(s) 482
Bpu10I CCTNAGC 1 cut(s) 150
Bpu1102I GCTNAGC 1 cut(s) 286
BpuEI CTTGAG 2 cut(s) 382, 872
BsaI GGTCTC 3 cut(s) 264, 499, 818
BsaJI CCNNGG 4 cut(s) 175, 653, 770, 881
BsaWI WCCGGW 4 cut(s) 443, 490, 553, 907
Bsc4I CCNNNNNNNGG 1 cut(s) 509
Bse118I RCCGGY 1 cut(s) 443
Bse3DI GCAATG 2 cut(s) 409, 853
BseBI CCWGG 1 cut(s) 177
BseDI CCNNGG 4 cut(s) 175, 653, 770, 881
BseGI GGATG 2 cut(s) 405, 609
BseLI CCNNNNNNNGG 1 cut(s) 509
BseMI GCAATG 2 cut(s) 409, 853
BseMII CTCAG 2 cut(s) 141, 316
BseRI GAGGAG 1 cut(s) 324
BseXI GCAGC 2 cut(s) 265, 934
BshTI ACCGGT 1 cut(s) 443
BsiSI CCGG 4 cut(s) 444, 491, 554, 908
BslFI GGGAC 3 cut(s) 560, 752, 777
BslI CCNNNNNNNGG 1 cut(s) 509
BsmAI GTCTC 5 cut(s) 191, 264, 327, 499, 818
BsmFI GGGAC 3 cut(s) 560, 752, 777
BsmI GAATGC 1 cut(s) 875
Bso31I GGTCTC 3 cut(s) 264, 499, 818
Bsp143I GATC 2 cut(s) 436, 514
Bsp1720I GCTNAGC 1 cut(s) 286
BspCNI CTCAG 2 cut(s) 142, 315
BspLI GGNNCC 1 cut(s) 402
BspMI ACCTGC 1 cut(s) 500
BspTNI GGTCTC 3 cut(s) 264, 499, 818
BsrDI GCAATG 2 cut(s) 409, 853
BsrFI RCCGGY 1 cut(s) 443
BssAI RCCGGY 1 cut(s) 443
BssECI CCNNGG 4 cut(s) 175, 653, 770, 881
BssMI GATC 2 cut(s) 436, 514
BssT1I CCWWGG 2 cut(s) 653, 770
Bst2UI CCWGG 1 cut(s) 177
Bst4CI ACNGT 2 cut(s) 95, 829
Bst6I CTCTTC 5 cut(s) 30, 342, 397, 502, 816
BstDEI CTNAG 4 cut(s) 150, 266, 286, 302
BstDSI CCRYGG 1 cut(s) 881
BstF5I GGATG 2 cut(s) 405, 609
BstKTI GATC 2 cut(s) 439, 517
BstMAI GTCTC 5 cut(s) 191, 264, 327, 499, 818
BstMBI GATC 2 cut(s) 436, 514
BstMWI GCNNNNNNNGC 1 cut(s) 892
BstNI CCWGG 1 cut(s) 177
BstSCI CCNGG 1 cut(s) 175
BstSFI CTRYAG 1 cut(s) 91
BstV1I GCAGC 2 cut(s) 265, 934
BstV2I GAAGAC 1 cut(s) 482
BstX2I RGATCY 1 cut(s) 436
BstYI RGATCY 1 cut(s) 436
BtgI CCRYGG 1 cut(s) 881
BtsCI GGATG 2 cut(s) 405, 609
BveI ACCTGC 1 cut(s) 500
Cfr10I RCCGGY 1 cut(s) 443
CseI GACGC 1 cut(s) 320
Csp6I GTAC 1 cut(s) 695
CspAI ACCGGT 1 cut(s) 443
CviAII CATG 2 cut(s) 102, 165
CviQI GTAC 1 cut(s) 695
DdeI CTNAG 4 cut(s) 150, 266, 286, 302
DpnI GATC 2 cut(s) 438, 516
DpnII GATC 2 cut(s) 436, 514
DriI GACNNNNNGTC 1 cut(s) 247
Eam1104I CTCTTC 5 cut(s) 30, 342, 397, 502, 816
Eam1105I GACNNNNNGTC 1 cut(s) 247
EarI CTCTTC 5 cut(s) 30, 342, 397, 502, 816
Eco130I CCWWGG 2 cut(s) 653, 770
Eco31I GGTCTC 3 cut(s) 264, 499, 818
Eco57I CTGAAG 1 cut(s) 417
EcoRI GAATTC 1 cut(s) 919
EcoRII CCWGG 1 cut(s) 175
EcoT14I CCWWGG 2 cut(s) 653, 770
EcoT22I ATGCAT 1 cut(s) 875
ErhI CCWWGG 2 cut(s) 653, 770
FaeI CATG 2 cut(s) 105, 168
FaqI GGGAC 3 cut(s) 560, 752, 777
FatI CATG 2 cut(s) 101, 164
Fnu4HI GCNGC 2 cut(s) 254, 948
FokI GGATG 2 cut(s) 392, 596
Fsp4HI GCNGC 2 cut(s) 254, 948
FspBI CTAG 1 cut(s) 967
GluI GCNGC 2 cut(s) 254, 948
HapII CCGG 4 cut(s) 444, 491, 554, 908
HgaI GACGC 1 cut(s) 320
Hin1II CATG 2 cut(s) 105, 168
HincII GTYRAC 1 cut(s) 349
HindII GTYRAC 1 cut(s) 349
HindIII AAGCTT 1 cut(s) 209
HinfI GANTC 3 cut(s) 180, 548, 641
HpaII CCGG 4 cut(s) 444, 491, 554, 908
HphI GGTGA 6 cut(s) 254, 332, 433, 492, 524, 543
Hpy166II GTNNAC 2 cut(s) 349, 851
Hpy188I TCNGA 3 cut(s) 436, 808, 918
Hpy188III TCNNGA 4 cut(s) 149, 222, 361, 645
Hpy8I GTNNAC 2 cut(s) 349, 851
Hpy99I CGWCG 2 cut(s) 314, 958
HpyAV CCTTC 2 cut(s) 441, 936
HpyCH4III ACNGT 2 cut(s) 95, 829
HpyCH4IV ACGT 6 cut(s) 85, 123, 381, 636, 665, 960
HpyCH4V TGCA 3 cut(s) 561, 873, 895
HpyF10VI GCNNNNNNNGC 1 cut(s) 892
HpyF3I CTNAG 4 cut(s) 150, 266, 286, 302
HpySE526I ACGT 6 cut(s) 85, 123, 381, 636, 665, 960
Hsp92II CATG 2 cut(s) 105, 168
Kzo9I GATC 2 cut(s) 436, 514
Lsp1109I GCAGC 2 cut(s) 265, 934
LweI GCATC 1 cut(s) 882
MaeI CTAG 1 cut(s) 967
MaeII ACGT 6 cut(s) 85, 123, 381, 636, 665, 960
MaeIII GTNAC 1 cut(s) 167
MalI GATC 2 cut(s) 438, 516
MboI GATC 2 cut(s) 436, 514
MflI RGATCY 1 cut(s) 436
MluCI AATT 4 cut(s) 17, 217, 421, 919
MlyI GAGTC 1 cut(s) 542
MmeI TCCRAC 2 cut(s) 772, 896
Mph1103I ATGCAT 1 cut(s) 875
MseI TTAA 4 cut(s) 206, 659, 668, 831
MspI CCGG 4 cut(s) 444, 491, 554, 908
MspR9I CCNGG 1 cut(s) 177
Mva1269I GAATGC 1 cut(s) 875
MvaI CCWGG 1 cut(s) 177
MwoI GCNNNNNNNGC 1 cut(s) 892
NdeII GATC 2 cut(s) 436, 514
NlaIII CATG 2 cut(s) 105, 168
NlaIV GGNNCC 1 cut(s) 402
NmuCI GTSAC 1 cut(s) 167
NsiI ATGCAT 1 cut(s) 875
PaqCI CACCTGC 1 cut(s) 500
PctI GAATGC 1 cut(s) 875
PfeI GAWTC 2 cut(s) 180, 641
PinAI ACCGGT 1 cut(s) 443
PkrI GCNGC 2 cut(s) 255, 949
PleI GAGTC 1 cut(s) 542
PpsI GAGTC 1 cut(s) 542
Psp1406I AACGTT 3 cut(s) 85, 665, 960
Psp6I CCWGG 1 cut(s) 175
PspGI CCWGG 1 cut(s) 175
PspN4I GGNNCC 1 cut(s) 402
PsuI RGATCY 1 cut(s) 436
RsaI GTAC 1 cut(s) 696
RsaNI GTAC 1 cut(s) 695
SaqAI TTAA 4 cut(s) 206, 659, 668, 831
SatI GCNGC 2 cut(s) 254, 948
Sau3AI GATC 2 cut(s) 436, 514
SchI GAGTC 1 cut(s) 542
ScrFI CCNGG 1 cut(s) 177
SfaNI GCATC 1 cut(s) 882
SfcI CTRYAG 1 cut(s) 91
SmlI CTYRAG 2 cut(s) 361, 887
SmoI CTYRAG 2 cut(s) 361, 887
Sse9I AATT 4 cut(s) 17, 217, 421, 919
SspMI CTAG 1 cut(s) 967
StyD4I CCNGG 1 cut(s) 175
StyI CCWWGG 2 cut(s) 653, 770
TaaI ACNGT 2 cut(s) 95, 829
TaiI ACGT 6 cut(s) 88, 126, 384, 639, 668, 963
TaqI TCGA 2 cut(s) 309, 876
TasI AATT 4 cut(s) 17, 217, 421, 919
TfiI GAWTC 2 cut(s) 180, 641
Tru1I TTAA 4 cut(s) 206, 659, 668, 831
Tru9I TTAA 4 cut(s) 206, 659, 668, 831
TseFI GTSAC 1 cut(s) 167
TseI GCWGC 2 cut(s) 253, 947
Tsp45I GTSAC 1 cut(s) 167
TspDTI ATGAA 4 cut(s) 90, 586, 694, 918
TspGWI ACGGA 2 cut(s) 573, 682
XapI RAATTY 2 cut(s) 217, 919
XspI CTAG 1 cut(s) 967
Zsp2I ATGCAT 1 cut(s) 875
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.