Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000358.1

Orthogroup ID

OG0008440

Physical Location & Seq

Genomic Coordinates Reverse (-)

3965 .. 6043

Gene Structure 2079 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000358.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1131 bp

atggacatctcagatatcctctttctccttcttttcctatttcctcatttctatgcactagaattagacgactgtccagcctccatgtgtggcaacaccggctttcctatccggttccctttcgggctacaaggccatcaacccaaaaactgttcttacccaggtttcgacctaacctgcaataaacagggcataacagtcctgagacttccaaactctggagaattttttgtcggagcaatcgattatgtcacacaagagattcaactctatgaccctagtagttgccttcccaaaaggcttctaaccctcaacctttcaggctctccttttgttgctgctttttatcagaactacaccttcctcagctgccctgcttcattcacagagtcaaagttcacccccattgattgcctcagtaactccacaacctcagtcttggcaaccccttccatcagcctcgcaaattcaatgtctaaggtgtgcaagatcatcgctacaatgccagttccggtttctgggatagttgagtctgaggatggattctcaaccaactttgattcagaccttatcttgacatggtatgagcctggttgtactccttgtgaaggtgaaggtggcatttgtggctttgagagcaacactagccaagtacttggttgcttccacaaatctaaaggcagatcaagcgacggtttccaagttttcaggattatttgtgtctccatcgcggtaccagccctcacaatggcgattgggatcgcttgctttgcatgcatcaaggacaggagtgggatgagtcctggtcgcactgcacagcggaaccccactgcagttgcagcagaacccgaacaacaatccacaatagtaatgaatggtctggatcagaccaccattgaatcctatcaaaagctagttcttggtgagagccggcggcttccaggacccaacgacaccacttgcgctatatgcttatcagagtatctcaccaaagacacggtaagatgcatcccagagtgtaaacactgcttccatgctgaatgtgttgatgagtggctgcgattgaacagtacatgtccagtttgtcgaaactccccctccccagctcatgtcaactcagatggggtctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GUB_WAK_bind WAK_assoc zf-RING_2

Protein Analysis

376

Amino Acids

40.87

Weight (kDa)

5.02

Isoelectric Point (pI)

57.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008440)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28040 AT2G25410 AT2G46493 AT2G46494 AT2G46495 AT2G46495 AT5G36001 AT5G36001
fragaria_vesca	FvH4_7g16350
malus_domestica	MD07G1148900.v1.1
prunus_persica	Prupe.2G187400_v2.0.a1
pyrus_communis	pycom07g14790
rosa_chinensis	RchiOBHm_Chr1g0359361
rosa_laevigata	RLG00000027876
rosa_multiflora	Rmu_ssc0000358.1_g000002
rosa_roxburghii	Rroxscaffold_4G00297050
rosa_rugosa	Rorug01G0270500
rosa_samantha	Rh1AG283900 Rh1AG284000 Rh1BG250100 Rh1CG268000 Rh1DG279000
rosa_wichuraiana	Rw1G025210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	185
Acc65I	GGTACC	1 cut(s)	733
AccB1I	GGYRCC	1 cut(s)	733
AccB7I	CCANNNNNTGG	1 cut(s)	218
AccII	CGCG	1 cut(s)	731
AciI	CCGC	3 cut(s)	731, 820, 934
AclWI	GGATC	2 cut(s)	767, 891
AcsI	RAATTY	2 cut(s)	224, 466
AfaI	GTAC	4 cut(s)	598, 654, 735, 1072
AfiI	CCNNNNNNNGG	4 cut(s)	218, 518, 608, 748
AflIII	ACRYGT	1 cut(s)	1073
AgsI	TTSAA	4 cut(s)	266, 471, 899, 1066
AjnI	CCWGG	4 cut(s)	160, 589, 802, 940
AluBI	AGCT	3 cut(s)	369, 913, 1106
AluI	AGCT	3 cut(s)	369, 913, 1106
Alw26I	GTCTC	2 cut(s)	199, 727
AlwI	GGATC	2 cut(s)	767, 891
AoxI	GGCC	1 cut(s)	133
ApeKI	GCWGC	4 cut(s)	338, 369, 839, 1057
ApoI	RAATTY	2 cut(s)	224, 466
ArsI	GACNNNNNNTTYG	2 cut(s)	458, 490
Asp718I	GGTACC	1 cut(s)	733
AspLEI	GCGC	1 cut(s)	965
AspS9I	GGNCC	1 cut(s)	944
AsuHPI	GGTGA	4 cut(s)	391, 623, 935, 979
AvaII	GGWCC	1 cut(s)	944
BanI	GGYRCC	1 cut(s)	733
BbvCI	CCTCAGC	1 cut(s)	365
BbvI	GCAGC	4 cut(s)	325, 356, 851, 1044
BccI	CCATC	5 cut(s)	144, 461, 533, 734, 1115
BcgI	CGANNNNNNTGC	2 cut(s)	475, 509
BciT130I	CCWGG	4 cut(s)	162, 591, 804, 942
BcoDI	GTCTC	2 cut(s)	199, 727
BfaI	CTAG	4 cut(s)	59, 279, 645, 914
BfmI	CTRYAG	1 cut(s)	831
BfuAI	ACCTGC	1 cut(s)	185
BisI	GCNGC	5 cut(s)	339, 370, 840, 935, 1058
BlsI	GCNGC	5 cut(s)	340, 371, 841, 936, 1059
BmcAI	AGTACT	1 cut(s)	654
Bme1390I	CCNGG	4 cut(s)	162, 591, 804, 942
Bme18I	GGWCC	1 cut(s)	944
BmgT120I	GGNCC	1 cut(s)	944
BmiI	GGNNCC	4 cut(s)	116, 735, 824, 946
BmrFI	CCNGG	4 cut(s)	162, 591, 804, 942
BmsI	GCATC	3 cut(s)	786, 995, 1017
BoxI	GACNNNNGTC	1 cut(s)	72
BpmI	CTGGAG	1 cut(s)	240
Bpu10I	CCTNAGC	1 cut(s)	365
Bsa29I	ATCGAT	1 cut(s)	243
BsaBI	GATNNNNATC	1 cut(s)	758
BsaJI	CCNNGG	1 cut(s)	160
BsaWI	WCCGGW	2 cut(s)	111, 511
BsaXI	ACNNNNNCTCC	2 cut(s)	1082, 1112
Bsc4I	CCNNNNNNNGG	4 cut(s)	218, 518, 608, 748
Bse118I	RCCGGY	2 cut(s)	98, 930
Bse1I	ACTGG	2 cut(s)	506, 1079
Bse8I	GATNNNNATC	1 cut(s)	758
BseBI	CCWGG	4 cut(s)	162, 591, 804, 942
BseCI	ATCGAT	1 cut(s)	243
BseDI	CCNNGG	1 cut(s)	160
BseGI	GGATG	3 cut(s)	544, 801, 1008
BseJI	GATNNNNATC	1 cut(s)	758
BseLI	CCNNNNNNNGG	4 cut(s)	218, 518, 608, 748
BseMII	CTCAG	7 cut(s)	24, 194, 379, 430, 447, 525, 1131
BseNI	ACTGG	2 cut(s)	506, 1079
BseXI	GCAGC	4 cut(s)	325, 356, 851, 1044
BseYI	CCCAGC	1 cut(s)	1102
BsgI	GTGCAG	1 cut(s)	798
Bsh1236I	CGCG	1 cut(s)	731
BshFI	GGCC	1 cut(s)	135
BshNI	GGYRCC	1 cut(s)	733
BshVI	ATCGAT	1 cut(s)	243
BsiSI	CCGG	4 cut(s)	99, 112, 512, 931
BslI	CCNNNNNNNGG	4 cut(s)	218, 518, 608, 748
BsmAI	GTCTC	2 cut(s)	199, 727
BsnI	GGCC	1 cut(s)	135
Bsp143I	GATC	4 cut(s)	489, 683, 759, 883
BspACI	CCGC	3 cut(s)	731, 820, 934
BspANI	GGCC	1 cut(s)	135
BspCNI	CTCAG	7 cut(s)	23, 195, 378, 429, 446, 526, 1130
BspDI	ATCGAT	1 cut(s)	243
BspFNI	CGCG	1 cut(s)	731
BspLI	GGNNCC	4 cut(s)	116, 735, 824, 946
BspMAI	CTGCAG	1 cut(s)	835
BspMI	ACCTGC	1 cut(s)	185
BspPI	GGATC	2 cut(s)	767, 891
BspT107I	GGYRCC	1 cut(s)	733
BsrFI	RCCGGY	2 cut(s)	98, 930
BsrI	ACTGG	2 cut(s)	506, 1079
BssAI	RCCGGY	2 cut(s)	98, 930
BssECI	CCNNGG	1 cut(s)	160
BssMI	GATC	4 cut(s)	489, 683, 759, 883
Bst2UI	CCWGG	4 cut(s)	162, 591, 804, 942
Bst4CI	ACNGT	6 cut(s)	74, 152, 199, 695, 1000, 1070
BstC8I	GCNNGC	3 cut(s)	766, 775, 932
BstDEI	CTNAG	8 cut(s)	10, 203, 365, 416, 433, 477, 534, 1117
BstENI	CCTNNNNNAGG	1 cut(s)	606
BstF5I	GGATG	3 cut(s)	544, 801, 1008
BstFNI	CGCG	1 cut(s)	731
BstHHI	GCGC	1 cut(s)	965
BstKTI	GATC	4 cut(s)	492, 686, 762, 886
BstMAI	GTCTC	2 cut(s)	199, 727
BstMBI	GATC	4 cut(s)	489, 683, 759, 883
BstNI	CCWGG	4 cut(s)	162, 591, 804, 942
BstNSI	RCATGY	2 cut(s)	777, 1077
BstPAI	GACNNNNGTC	1 cut(s)	72
BstSCI	CCNGG	4 cut(s)	160, 589, 802, 940
BstSFI	CTRYAG	1 cut(s)	831
BstUI	CGCG	1 cut(s)	731
BstV1I	GCAGC	4 cut(s)	325, 356, 851, 1044
BstXI	CCANNNNNNTGG	1 cut(s)	656
Bsu15I	ATCGAT	1 cut(s)	243
BsuRI	GGCC	1 cut(s)	135
BsuTUI	ATCGAT	1 cut(s)	243
BtgZI	GCGATG	2 cut(s)	478, 712
BtsCI	GGATG	3 cut(s)	544, 801, 1008
BtsI	GCAGTG	3 cut(s)	810, 828, 1024
BtsIMutI	CAGTG	3 cut(s)	810, 828, 1024
BveI	ACCTGC	1 cut(s)	185
Cac8I	GCNNGC	3 cut(s)	766, 775, 932
CfoI	GCGC	1 cut(s)	965
Cfr10I	RCCGGY	2 cut(s)	98, 930
Cfr13I	GGNCC	1 cut(s)	944
ClaI	ATCGAT	1 cut(s)	243
Csp6I	GTAC	4 cut(s)	597, 653, 734, 1071
CspCI	CAANNNNNGTGG	2 cut(s)	817, 852
CviAII	CATG	6 cut(s)	85, 579, 774, 1034, 1074, 1109
CviQI	GTAC	4 cut(s)	597, 653, 734, 1071
DdeI	CTNAG	8 cut(s)	10, 203, 365, 416, 433, 477, 534, 1117
DpnI	GATC	4 cut(s)	491, 685, 761, 885
DpnII	GATC	4 cut(s)	489, 683, 759, 883
Eco32I	GATATC	1 cut(s)	16
Eco47I	GGWCC	1 cut(s)	944
EcoNI	CCTNNNNNAGG	1 cut(s)	606
EcoO109I	RGGNCCY	1 cut(s)	944
EcoRII	CCWGG	4 cut(s)	160, 589, 802, 940
EcoRV	GATATC	1 cut(s)	16
EcoT22I	ATGCAT	2 cut(s)	779, 1010
FaeI	CATG	6 cut(s)	88, 582, 777, 1037, 1077, 1112
FatI	CATG	6 cut(s)	84, 578, 773, 1033, 1073, 1108
Fnu4HI	GCNGC	5 cut(s)	339, 370, 840, 935, 1058
FokI	GGATG	3 cut(s)	551, 808, 995
Fsp4HI	GCNGC	5 cut(s)	339, 370, 840, 935, 1058
FspBI	CTAG	4 cut(s)	59, 279, 645, 914
GlaI	GCGC	1 cut(s)	964
GluI	GCNGC	5 cut(s)	339, 370, 840, 935, 1058
GsaI	CCCAGC	1 cut(s)	1106
GsuI	CTGGAG	1 cut(s)	240
HaeIII	GGCC	1 cut(s)	135
HapII	CCGG	4 cut(s)	99, 112, 512, 931
HhaI	GCGC	1 cut(s)	965
Hin1II	CATG	6 cut(s)	88, 582, 777, 1037, 1077, 1112
Hin6I	GCGC	1 cut(s)	963
HinP1I	GCGC	1 cut(s)	963
HincII	GTYRAC	1 cut(s)	1114
HindII	GTYRAC	1 cut(s)	1114
HinfI	GANTC	7 cut(s)	262, 389, 530, 543, 560, 799, 899
HpaII	CCGG	4 cut(s)	99, 112, 512, 931
HphI	GGTGA	4 cut(s)	391, 623, 935, 979
Hpy166II	GTNNAC	3 cut(s)	399, 1022, 1114
Hpy188I	TCNGA	9 cut(s)	13, 236, 351, 535, 565, 888, 979, 1120, 1130
Hpy188III	TCNNGA	5 cut(s)	202, 219, 574, 709, 881
Hpy8I	GTNNAC	3 cut(s)	399, 1022, 1114
Hpy99I	CGWCG	1 cut(s)	695
HpyAV	CCTTC	6 cut(s)	38, 299, 370, 459, 602, 608
HpyCH4III	ACNGT	6 cut(s)	74, 152, 199, 695, 1000, 1070
HpyCH4V	TGCA	9 cut(s)	56, 180, 486, 773, 777, 815, 833, 839, 1008
HpyF3I	CTNAG	8 cut(s)	10, 203, 365, 416, 433, 477, 534, 1117
Hsp92II	CATG	6 cut(s)	88, 582, 777, 1037, 1077, 1112
HspAI	GCGC	1 cut(s)	963
KpnI	GGTACC	1 cut(s)	737
KroI	GCCGGC	1 cut(s)	930
KroNI	GCCGGC	1 cut(s)	932
Kzo9I	GATC	4 cut(s)	489, 683, 759, 883
LmnI	GCTCC	1 cut(s)	236
Lsp1109I	GCAGC	4 cut(s)	325, 356, 851, 1044
LweI	GCATC	3 cut(s)	786, 995, 1017
MaeI	CTAG	4 cut(s)	59, 279, 645, 914
MaeIII	GTNAC	2 cut(s)	250, 419
MalI	GATC	4 cut(s)	491, 685, 761, 885
MboI	GATC	4 cut(s)	489, 683, 759, 883
MluCI	AATT	3 cut(s)	62, 224, 466
MlyI	GAGTC	3 cut(s)	398, 539, 808
MmeI	TCCRAC	1 cut(s)	214
Mph1103I	ATGCAT	2 cut(s)	779, 1010
MroNI	GCCGGC	1 cut(s)	930
MslI	CAYNNNNRTG	1 cut(s)	51
MspA1I	CMGCKG	2 cut(s)	369, 820
MspI	CCGG	4 cut(s)	99, 112, 512, 931
MspR9I	CCNGG	4 cut(s)	162, 591, 804, 942
MvaI	CCWGG	4 cut(s)	162, 591, 804, 942
MvnI	CGCG	1 cut(s)	731
NaeI	GCCGGC	1 cut(s)	932
NdeII	GATC	4 cut(s)	489, 683, 759, 883
NgoMIV	GCCGGC	1 cut(s)	930
NlaIII	CATG	6 cut(s)	88, 582, 777, 1037, 1077, 1112
NlaIV	GGNNCC	4 cut(s)	116, 735, 824, 946
NmuCI	GTSAC	1 cut(s)	250
NsiI	ATGCAT	2 cut(s)	779, 1010
NspI	RCATGY	2 cut(s)	777, 1077
PaeI	GCATGC	1 cut(s)	777
PciI	ACATGT	1 cut(s)	1073
PcsI	WCGNNNNNNNCGW	1 cut(s)	240
PdiI	GCCGGC	1 cut(s)	932
PfeI	GAWTC	4 cut(s)	262, 543, 560, 899
PflMI	CCANNNNNTGG	1 cut(s)	218
PfoI	TCCNGGA	1 cut(s)	940
PkrI	GCNGC	5 cut(s)	340, 371, 841, 936, 1059
PleI	GAGTC	3 cut(s)	397, 538, 807
PpsI	GAGTC	3 cut(s)	397, 538, 807
PpuMI	RGGWCCY	1 cut(s)	944
PscI	ACATGT	1 cut(s)	1073
PshAI	GACNNNNGTC	1 cut(s)	72
Psp5II	RGGWCCY	1 cut(s)	944
Psp6I	CCWGG	4 cut(s)	160, 589, 802, 940
PspFI	CCCAGC	1 cut(s)	1102
PspGI	CCWGG	4 cut(s)	160, 589, 802, 940
PspN4I	GGNNCC	4 cut(s)	116, 735, 824, 946
PspPI	GGNCC	1 cut(s)	944
PspPPI	RGGWCCY	1 cut(s)	944
PstI	CTGCAG	1 cut(s)	835
PvuII	CAGCTG	1 cut(s)	369
RsaI	GTAC	4 cut(s)	598, 654, 735, 1072
RsaNI	GTAC	4 cut(s)	597, 653, 734, 1071
RseI	CAYNNNNRTG	1 cut(s)	51
SatI	GCNGC	5 cut(s)	339, 370, 840, 935, 1058
Sau3AI	GATC	4 cut(s)	489, 683, 759, 883
Sau96I	GGNCC	1 cut(s)	944
ScaI	AGTACT	1 cut(s)	654
SchI	GAGTC	3 cut(s)	398, 539, 808
ScrFI	CCNGG	4 cut(s)	162, 591, 804, 942
SfaNI	GCATC	3 cut(s)	786, 995, 1017
SfcI	CTRYAG	1 cut(s)	831
SinI	GGWCC	1 cut(s)	944
SmiMI	CAYNNNNRTG	1 cut(s)	51
SphI	GCATGC	1 cut(s)	777
Sse9I	AATT	3 cut(s)	62, 224, 466
SsiI	CCGC	3 cut(s)	731, 820, 934
SspMI	CTAG	4 cut(s)	59, 279, 645, 914
StyD4I	CCNGG	4 cut(s)	160, 589, 802, 940
TaaI	ACNGT	6 cut(s)	74, 152, 199, 695, 1000, 1070
TaqI	TCGA	3 cut(s)	168, 243, 1087
TasI	AATT	3 cut(s)	62, 224, 466
TatI	WGTACW	3 cut(s)	596, 652, 1070
TauI	GCSGC	1 cut(s)	937
TfiI	GAWTC	4 cut(s)	262, 543, 560, 899
TscAI	CASTG	3 cut(s)	817, 835, 1031
TseFI	GTSAC	1 cut(s)	250
TseI	GCWGC	4 cut(s)	338, 369, 839, 1057
Tsp45I	GTSAC	1 cut(s)	250
TspDTI	ATGAA	2 cut(s)	369, 887
TspRI	CASTG	3 cut(s)	817, 835, 1031
Van91I	CCANNNNNTGG	1 cut(s)	218
VpaK11BI	GGWCC	1 cut(s)	944
XagI	CCTNNNNNAGG	1 cut(s)	606
XapI	RAATTY	2 cut(s)	224, 466
XceI	RCATGY	2 cut(s)	777, 1077
XspI	CTAG	4 cut(s)	59, 279, 645, 914
ZrmI	AGTACT	1 cut(s)	654
Zsp2I	ATGCAT	2 cut(s)	779, 1010

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.