Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0008440

Physical Location & Seq

Genomic Coordinates Reverse (-)

16829294 .. 16830004

Gene Structure 711 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g14790.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGGACATCTCACACCTCCTCTTTCTCCTTCTCGTCCTCCTCTTCACCCACATCTCTGCACTCAATGATTGCCCGGCTTCCGATTGCGGCAGTGACGACAGCTTCCCAATCCGATTCCCTTTCCGGTTAGTACCCAAACAACCCAAAAACTGCGGTTTCCCGGGCTTCAACCTGGCCTGCAACAGCCATGGTCAAACAACTCTAAAACTTCCAAACTCCGGCGACTTTTTCGTCAGACGAATCAGCTATGCCACACAAGAAATCCAACTTTTCGACCCAGAAAAATGCCTCCCTCGAAAGCTTCTAACCCTCAATCTCTCGGGCTCTCCTTTTGTTGCTCCCACGTACAAGAACTACACCTTCCTCAGCTGCCCGGCTTCGTTCACCAAGTCGAGGTTCACTCCCATTGACTGCCTCAGCAACTCCACCACCTCGGTTCTGGCCACCCCTTCCGCCACCCTGGCGAATTCGATGTCCGCCACGTGCCGGATTGTTGACACATTGGAGGTTCCGGTTTGCGGGCAGGTTCTGACGGAGGACGGATTCTCAACCAACCTTGACTGGGATCTTAGTTTGACTTGGTATGAGCCTTCTTGCAGTAGTTGTGAGGTGGAAGGACGCATTTGTGGATTTATCACCAACACCACCCAAGAACTGGGTTGCACCTTCAATTCAACAGCAGGTAATTTTCTAATTCACAAATTTGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GUB_WAK_bind WAK_assoc zf-RING_2

Protein Analysis

237

Amino Acids

25.93

Weight (kDa)

5.51

Isoelectric Point (pI)

46.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GUB_WAK_bind	PF13947	24 - 91	2.3e-17	Wall-associated receptor kinase galacturonan-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008440)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28040 AT2G25410 AT2G46493 AT2G46494 AT2G46495 AT2G46495 AT5G36001 AT5G36001
fragaria_vesca	FvH4_7g16350
malus_domestica	MD07G1148900.v1.1
prunus_persica	Prupe.2G187400_v2.0.a1
pyrus_communis	pycom07g14790
rosa_chinensis	RchiOBHm_Chr1g0359361
rosa_laevigata	RLG00000027876
rosa_multiflora	Rmu_ssc0000358.1_g000002
rosa_roxburghii	Rroxscaffold_4G00297050
rosa_rugosa	Rorug01G0270500
rosa_samantha	Rh1AG283900 Rh1AG284000 Rh1BG250100 Rh1CG268000 Rh1DG279000
rosa_wichuraiana	Rw1G025210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	230
Acc36I	ACCTGC	2 cut(s)	514, 671
AccB7I	CCANNNNNTGG	1 cut(s)	655
AciI	CCGC	5 cut(s)	87, 153, 453, 477, 519
AclWI	GGATC	1 cut(s)	573
AcoI	YGGCCR	1 cut(s)	441
AcsI	RAATTY	2 cut(s)	466, 701
AcvI	CACGTG	1 cut(s)	483
AfaI	GTAC	2 cut(s)	132, 347
AfiI	CCNNNNNNNGG	6 cut(s)	218, 393, 486, 518, 562, 655
AgsI	TTSAA	3 cut(s)	169, 670, 675
AjnI	CCWGG	2 cut(s)	171, 459
AjuI	GAANNNNNNNTTGG	2 cut(s)	380, 412
AluBI	AGCT	4 cut(s)	102, 246, 301, 369
AluI	AGCT	4 cut(s)	102, 246, 301, 369
AlwI	GGATC	1 cut(s)	573
AlwNI	CAGNNNCTG	1 cut(s)	529
Ama87I	CYCGRG	2 cut(s)	160, 319
AoxI	GGCC	2 cut(s)	174, 441
ApeKI	GCWGC	1 cut(s)	369
ApoI	RAATTY	2 cut(s)	466, 701
ArsI	GACNNNNNNTTYG	2 cut(s)	458, 490
AsuC2I	CCSGG	4 cut(s)	74, 161, 162, 374
AsuHPI	GGTGA	3 cut(s)	37, 376, 628
AvaI	CYCGRG	2 cut(s)	160, 319
BalI	TGGCCA	1 cut(s)	443
BanII	GRGCYC	1 cut(s)	326
BbrPI	CACGTG	1 cut(s)	483
BbvCI	CCTCAGC	2 cut(s)	365, 416
BbvI	GCAGC	1 cut(s)	356
BciT130I	CCWGG	2 cut(s)	173, 461
BcnI	CCSGG	4 cut(s)	74, 161, 162, 374
BfuAI	ACCTGC	2 cut(s)	514, 671
BglI	GCCNNNNNGGC	1 cut(s)	461
BisI	GCNGC	2 cut(s)	88, 370
BlsI	GCNGC	2 cut(s)	89, 371
Bme1390I	CCNGG	6 cut(s)	74, 161, 162, 173, 374, 461
BmeT110I	CYCGRG	2 cut(s)	160, 319
BmiI	GGNNCC	1 cut(s)	510
BmrFI	CCNGG	6 cut(s)	74, 161, 162, 173, 374, 461
BmrI	ACTGGG	2 cut(s)	571, 665
BmuI	ACTGGG	2 cut(s)	571, 665
BplI	GAGNNNNNCTC	2 cut(s)	385, 417
Bpu10I	CCTNAGC	2 cut(s)	365, 416
BpuMI	CCSGG	4 cut(s)	74, 161, 162, 374
BsaAI	YACGTR	2 cut(s)	345, 483
BsaJI	CCNNGG	4 cut(s)	160, 187, 432, 459
BsaWI	WCCGGW	2 cut(s)	123, 511
Bsc4I	CCNNNNNNNGG	6 cut(s)	218, 393, 486, 518, 562, 655
Bse1I	ACTGG	2 cut(s)	566, 660
BseBI	CCWGG	2 cut(s)	173, 461
BseDI	CCNNGG	4 cut(s)	160, 187, 432, 459
BseLI	CCNNNNNNNGG	6 cut(s)	218, 393, 486, 518, 562, 655
BseMII	CTCAG	2 cut(s)	379, 430
BseNI	ACTGG	2 cut(s)	566, 660
BseRI	GAGGAG	2 cut(s)	8, 29
BseXI	GCAGC	1 cut(s)	356
BsgI	GTGCAG	1 cut(s)	42
BshFI	GGCC	2 cut(s)	176, 443
BsiHKCI	CYCGRG	2 cut(s)	160, 319
BsiSI	CCGG	7 cut(s)	74, 124, 161, 219, 374, 487, 512
BslI	CCNNNNNNNGG	6 cut(s)	218, 393, 486, 518, 562, 655
BsnI	GGCC	2 cut(s)	176, 443
BsoBI	CYCGRG	2 cut(s)	160, 319
Bsp1286I	GDGCHC	1 cut(s)	326
Bsp143I	GATC	1 cut(s)	565
Bsp19I	CCATGG	1 cut(s)	187
BspACI	CCGC	5 cut(s)	87, 153, 453, 477, 519
BspANI	GGCC	2 cut(s)	176, 443
BspCNI	CTCAG	2 cut(s)	378, 429
BspLI	GGNNCC	1 cut(s)	510
BspMI	ACCTGC	2 cut(s)	514, 671
BspPI	GGATC	1 cut(s)	573
BsrI	ACTGG	2 cut(s)	566, 660
BssECI	CCNNGG	4 cut(s)	160, 187, 432, 459
BssMI	GATC	1 cut(s)	565
BssT1I	CCWWGG	1 cut(s)	187
Bst2UI	CCWGG	2 cut(s)	173, 461
Bst6I	CTCTTC	1 cut(s)	47
BstBAI	YACGTR	2 cut(s)	345, 483
BstC8I	GCNNGC	2 cut(s)	178, 521
BstDEI	CTNAG	3 cut(s)	365, 416, 569
BstDSI	CCRYGG	1 cut(s)	187
BstKTI	GATC	1 cut(s)	568
BstMBI	GATC	1 cut(s)	565
BstMWI	GCNNNNNNNGC	1 cut(s)	461
BstNI	CCWGG	2 cut(s)	173, 461
BstSCI	CCNGG	6 cut(s)	72, 159, 160, 171, 372, 459
BstV1I	GCAGC	1 cut(s)	356
BstX2I	RGATCY	1 cut(s)	565
BstYI	RGATCY	1 cut(s)	565
BsuRI	GGCC	2 cut(s)	176, 443
BtgI	CCRYGG	1 cut(s)	187
BtsI	GCAGTG	1 cut(s)	97
BtsIMutI	CAGTG	1 cut(s)	97
BveI	ACCTGC	2 cut(s)	514, 671
Cac8I	GCNNGC	2 cut(s)	178, 521
CaiI	CAGNNNCTG	1 cut(s)	529
Cfr9I	CCCGGG	1 cut(s)	160
CseI	GACGC	1 cut(s)	627
Csp6I	GTAC	2 cut(s)	131, 346
CviAII	CATG	2 cut(s)	188, 708
CviQI	GTAC	2 cut(s)	131, 346
DdeI	CTNAG	3 cut(s)	365, 416, 569
DpnI	GATC	1 cut(s)	567
DpnII	GATC	1 cut(s)	565
DrdI	GACNNNNNNGTC	1 cut(s)	230
DseDI	GACNNNNNNGTC	1 cut(s)	230
EaeI	YGGCCR	1 cut(s)	441
Eam1104I	CTCTTC	1 cut(s)	47
EarI	CTCTTC	1 cut(s)	47
EciI	GGCGGA	2 cut(s)	442, 466
Eco130I	CCWWGG	1 cut(s)	187
Eco24I	GRGCYC	1 cut(s)	326
Eco72I	CACGTG	1 cut(s)	483
Eco88I	CYCGRG	2 cut(s)	160, 319
EcoRI	GAATTC	1 cut(s)	466
EcoRII	CCWGG	2 cut(s)	171, 459
EcoT14I	CCWWGG	1 cut(s)	187
EcoT38I	GRGCYC	1 cut(s)	326
ErhI	CCWWGG	1 cut(s)	187
FaeI	CATG	2 cut(s)	191, 711
FaiI	YATR	4 cut(s)	189, 249, 585, 709
FatI	CATG	2 cut(s)	187, 707
FauI	CCCGC	1 cut(s)	512
Fnu4HI	GCNGC	2 cut(s)	88, 370
FriOI	GRGCYC	1 cut(s)	326
Fsp4HI	GCNGC	2 cut(s)	88, 370
GluI	GCNGC	2 cut(s)	88, 370
HaeIII	GGCC	2 cut(s)	176, 443
HapII	CCGG	7 cut(s)	74, 124, 161, 219, 374, 487, 512
HgaI	GACGC	1 cut(s)	627
Hin1II	CATG	2 cut(s)	191, 711
HincII	GTYRAC	1 cut(s)	496
HindII	GTYRAC	1 cut(s)	496
HindIII	AAGCTT	1 cut(s)	299
HinfI	GANTC	3 cut(s)	114, 240, 543
HpaII	CCGG	7 cut(s)	74, 124, 161, 219, 374, 487, 512
HphI	GGTGA	3 cut(s)	37, 376, 628
Hpy166II	GTNNAC	3 cut(s)	384, 399, 496
Hpy188I	TCNGA	4 cut(s)	82, 113, 236, 531
Hpy8I	GTNNAC	3 cut(s)	384, 399, 496
HpyAV	CCTTC	6 cut(s)	38, 370, 459, 600, 608, 676
HpyCH4IV	ACGT	2 cut(s)	344, 482
HpyCH4V	TGCA	5 cut(s)	59, 180, 597, 663, 707
HpyF10VI	GCNNNNNNNGC	1 cut(s)	461
HpyF3I	CTNAG	3 cut(s)	365, 416, 569
HpySE526I	ACGT	2 cut(s)	344, 482
Hsp92II	CATG	2 cut(s)	191, 711
Kzo9I	GATC	1 cut(s)	565
LmnI	GCTCC	1 cut(s)	343
Lsp1109I	GCAGC	1 cut(s)	356
MaeII	ACGT	2 cut(s)	344, 482
MaeIII	GTNAC	1 cut(s)	92
MalI	GATC	1 cut(s)	567
MboI	GATC	1 cut(s)	565
MboII	GAAGA	1 cut(s)	34
MflI	RGATCY	1 cut(s)	565
MhlI	GDGCHC	1 cut(s)	326
MlsI	TGGCCA	1 cut(s)	443
MluCI	AATT	5 cut(s)	466, 670, 685, 693, 701
MluNI	TGGCCA	1 cut(s)	443
MmeI	TCCRAC	1 cut(s)	289
Mox20I	TGGCCA	1 cut(s)	443
MscI	TGGCCA	1 cut(s)	443
Msp20I	TGGCCA	1 cut(s)	443
MspA1I	CMGCKG	1 cut(s)	369
MspI	CCGG	7 cut(s)	74, 124, 161, 219, 374, 487, 512
MspR9I	CCNGG	6 cut(s)	74, 161, 162, 173, 374, 461
MvaI	CCWGG	2 cut(s)	173, 461
MwoI	GCNNNNNNNGC	1 cut(s)	461
NciI	CCSGG	4 cut(s)	74, 161, 162, 374
NcoI	CCATGG	1 cut(s)	187
NdeII	GATC	1 cut(s)	565
NlaIII	CATG	2 cut(s)	191, 711
NlaIV	GGNNCC	1 cut(s)	510
NmuCI	GTSAC	1 cut(s)	92
PfeI	GAWTC	3 cut(s)	114, 240, 543
PflMI	CCANNNNNTGG	1 cut(s)	655
PkrI	GCNGC	2 cut(s)	89, 371
PmaCI	CACGTG	1 cut(s)	483
PmlI	CACGTG	1 cut(s)	483
Ppu21I	YACGTR	2 cut(s)	345, 483
Psp6I	CCWGG	2 cut(s)	171, 459
PspCI	CACGTG	1 cut(s)	483
PspGI	CCWGG	2 cut(s)	171, 459
PspN4I	GGNNCC	1 cut(s)	510
PstNI	CAGNNNCTG	1 cut(s)	529
PsuI	RGATCY	1 cut(s)	565
PvuII	CAGCTG	1 cut(s)	369
RsaI	GTAC	2 cut(s)	132, 347
RsaNI	GTAC	2 cut(s)	131, 346
SatI	GCNGC	2 cut(s)	88, 370
Sau3AI	GATC	1 cut(s)	565
ScrFI	CCNGG	6 cut(s)	74, 161, 162, 173, 374, 461
SduI	GDGCHC	1 cut(s)	326
SmaI	CCCGGG	1 cut(s)	162
Sse9I	AATT	5 cut(s)	466, 670, 685, 693, 701
SsiI	CCGC	5 cut(s)	87, 153, 453, 477, 519
StyD4I	CCNGG	6 cut(s)	72, 159, 160, 171, 372, 459
StyI	CCWWGG	1 cut(s)	187
TaiI	ACGT	2 cut(s)	347, 485
TaqI	TCGA	4 cut(s)	273, 295, 392, 470
TasI	AATT	5 cut(s)	466, 670, 685, 693, 701
TauI	GCSGC	1 cut(s)	90
TfiI	GAWTC	3 cut(s)	114, 240, 543
TscAI	CASTG	1 cut(s)	97
TseFI	GTSAC	1 cut(s)	92
TseI	GCWGC	1 cut(s)	369
Tsp45I	GTSAC	1 cut(s)	92
TspGWI	ACGGA	2 cut(s)	548, 555
TspMI	CCCGGG	1 cut(s)	160
TspRI	CASTG	1 cut(s)	97
Van91I	CCANNNNNTGG	1 cut(s)	655
XapI	RAATTY	2 cut(s)	466, 701
XcmI	CCANNNNNNNNNTGG	2 cut(s)	436, 652
XmaI	CCCGGG	1 cut(s)	160

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.