Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0008440

Physical Location & Seq

Genomic Coordinates Reverse (-)

53290742 .. 53291176

Gene Structure 435 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG268000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 276 bp

ATGGCGATTGGGATCGCTTGCTTTGCATGCGTCAAGGACAGGAGTGGGATCAGTCCTGGTCGCACTGCGCAGCGGAACCCCACTGCAGTTGCAGCAGAACCCGAACAACAATCCACAATAGTAATGAATGGTCTGGATCAGACCACCATTGAATCCTATCAAAAGCTAGTTCTTGGTGAGAGCCGGCGGCTTCCAGGACCCAACGACACCACTTGCGCTATATGCTTATCAGAGTATCTCACCAAAGACACGTTATTCCCTCTTTACTGTATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GUB_WAK_bind WAK_assoc zf-RING_2

Protein Analysis

91

Amino Acids

9.85

Weight (kDa)

5.21

Isoelectric Point (pI)

59.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008440)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28040 AT2G25410 AT2G46493 AT2G46494 AT2G46495 AT2G46495 AT5G36001 AT5G36001
fragaria_vesca	FvH4_7g16350
malus_domestica	MD07G1148900.v1.1
prunus_persica	Prupe.2G187400_v2.0.a1
pyrus_communis	pycom07g14790
rosa_chinensis	RchiOBHm_Chr1g0359361
rosa_laevigata	RLG00000027876
rosa_multiflora	Rmu_ssc0000358.1_g000002
rosa_roxburghii	Rroxscaffold_4G00297050
rosa_rugosa	Rorug01G0270500
rosa_samantha	Rh1AG283900 Rh1AG284000 Rh1BG250100 Rh1CG268000 Rh1DG279000
rosa_wichuraiana	Rw1G025210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	69
AciI	CCGC	2 cut(s)	73, 187
AclWI	GGATC	3 cut(s)	20, 56, 144
AflIII	ACRYGT	1 cut(s)	249
AgsI	TTSAA	1 cut(s)	152
AjnI	CCWGG	2 cut(s)	55, 193
AluBI	AGCT	1 cut(s)	166
AluI	AGCT	1 cut(s)	166
AlwI	GGATC	3 cut(s)	20, 56, 144
ApeKI	GCWGC	2 cut(s)	70, 92
AspLEI	GCGC	2 cut(s)	70, 218
AspS9I	GGNCC	1 cut(s)	197
AsuHPI	GGTGA	2 cut(s)	188, 232
AvaII	GGWCC	1 cut(s)	197
BbvI	GCAGC	2 cut(s)	82, 104
BciT130I	CCWGG	2 cut(s)	57, 195
BfaI	CTAG	1 cut(s)	167
BfmI	CTRYAG	1 cut(s)	84
BisI	GCNGC	3 cut(s)	71, 93, 188
BlsI	GCNGC	3 cut(s)	72, 94, 189
Bme1390I	CCNGG	2 cut(s)	57, 195
Bme18I	GGWCC	1 cut(s)	197
BmgT120I	GGNCC	1 cut(s)	197
BmiI	GGNNCC	2 cut(s)	77, 199
BmrFI	CCNGG	2 cut(s)	57, 195
BsaBI	GATNNNNATC	1 cut(s)	11
Bse118I	RCCGGY	1 cut(s)	183
Bse8I	GATNNNNATC	1 cut(s)	11
BseBI	CCWGG	2 cut(s)	57, 195
BseJI	GATNNNNATC	1 cut(s)	11
BseXI	GCAGC	2 cut(s)	82, 104
BsiSI	CCGG	1 cut(s)	184
Bsp143I	GATC	3 cut(s)	12, 48, 136
BspACI	CCGC	2 cut(s)	73, 187
BspLI	GGNNCC	2 cut(s)	77, 199
BspMAI	CTGCAG	1 cut(s)	88
BspPI	GGATC	3 cut(s)	20, 56, 144
BsrFI	RCCGGY	1 cut(s)	183
BssAI	RCCGGY	1 cut(s)	183
BssMI	GATC	3 cut(s)	12, 48, 136
Bst2UI	CCWGG	2 cut(s)	57, 195
Bst4CI	ACNGT	1 cut(s)	269
BstC8I	GCNNGC	3 cut(s)	19, 28, 185
BstHHI	GCGC	2 cut(s)	70, 218
BstKTI	GATC	3 cut(s)	15, 51, 139
BstMBI	GATC	3 cut(s)	12, 48, 136
BstMWI	GCNNNNNNNGC	4 cut(s)	23, 27, 92, 222
BstNI	CCWGG	2 cut(s)	57, 195
BstNSI	RCATGY	1 cut(s)	30
BstSCI	CCNGG	2 cut(s)	55, 193
BstSFI	CTRYAG	1 cut(s)	84
BstV1I	GCAGC	2 cut(s)	82, 104
BtsI	GCAGTG	2 cut(s)	63, 81
BtsIMutI	CAGTG	2 cut(s)	63, 81
Cac8I	GCNNGC	3 cut(s)	19, 28, 185
CfoI	GCGC	2 cut(s)	70, 218
Cfr10I	RCCGGY	1 cut(s)	183
Cfr13I	GGNCC	1 cut(s)	197
CseI	GACGC	1 cut(s)	19
CspCI	CAANNNNNGTGG	2 cut(s)	70, 105
CviAII	CATG	1 cut(s)	27
CviJI	RGCY	3 cut(s)	166, 183, 190
CviKI_1	RGCY	3 cut(s)	166, 183, 190
DpnI	GATC	3 cut(s)	14, 50, 138
DpnII	GATC	3 cut(s)	12, 48, 136
Eco47I	GGWCC	1 cut(s)	197
EcoO109I	RGGNCCY	1 cut(s)	197
EcoRII	CCWGG	2 cut(s)	55, 193
FaeI	CATG	1 cut(s)	30
FaiI	YATR	5 cut(s)	28, 221, 223, 272, 274
FatI	CATG	1 cut(s)	26
Fnu4HI	GCNGC	3 cut(s)	71, 93, 188
Fsp4HI	GCNGC	3 cut(s)	71, 93, 188
FspBI	CTAG	1 cut(s)	167
FspI	TGCGCA	1 cut(s)	69
GlaI	GCGC	2 cut(s)	69, 217
GluI	GCNGC	3 cut(s)	71, 93, 188
HapII	CCGG	1 cut(s)	184
HgaI	GACGC	1 cut(s)	19
HhaI	GCGC	2 cut(s)	70, 218
Hin1II	CATG	1 cut(s)	30
Hin6I	GCGC	2 cut(s)	68, 216
HinP1I	GCGC	2 cut(s)	68, 216
HinfI	GANTC	1 cut(s)	152
HpaII	CCGG	1 cut(s)	184
HphI	GGTGA	2 cut(s)	188, 232
Hpy188I	TCNGA	2 cut(s)	141, 232
Hpy188III	TCNNGA	1 cut(s)	134
HpyCH4III	ACNGT	1 cut(s)	269
HpyCH4IV	ACGT	1 cut(s)	251
HpyCH4V	TGCA	3 cut(s)	26, 86, 92
HpyF10VI	GCNNNNNNNGC	4 cut(s)	23, 27, 92, 222
HpySE526I	ACGT	1 cut(s)	251
Hsp92II	CATG	1 cut(s)	30
HspAI	GCGC	2 cut(s)	68, 216
KroI	GCCGGC	1 cut(s)	183
KroNI	GCCGGC	1 cut(s)	185
Kzo9I	GATC	3 cut(s)	12, 48, 136
LpnPI	CCDG	7 cut(s)	25, 42, 69, 119, 180, 197, 207
Lsp1109I	GCAGC	2 cut(s)	82, 104
MaeI	CTAG	1 cut(s)	167
MaeII	ACGT	1 cut(s)	251
MalI	GATC	3 cut(s)	14, 50, 138
MboI	GATC	3 cut(s)	12, 48, 136
MnlI	CCTC	1 cut(s)	270
MroNI	GCCGGC	1 cut(s)	183
MspA1I	CMGCKG	1 cut(s)	73
MspI	CCGG	1 cut(s)	184
MspR9I	CCNGG	2 cut(s)	57, 195
MvaI	CCWGG	2 cut(s)	57, 195
MwoI	GCNNNNNNNGC	4 cut(s)	23, 27, 92, 222
NaeI	GCCGGC	1 cut(s)	185
NdeII	GATC	3 cut(s)	12, 48, 136
NgoMIV	GCCGGC	1 cut(s)	183
NlaIII	CATG	1 cut(s)	30
NlaIV	GGNNCC	2 cut(s)	77, 199
NsbI	TGCGCA	1 cut(s)	69
NspI	RCATGY	1 cut(s)	30
PaeI	GCATGC	1 cut(s)	30
PdiI	GCCGGC	1 cut(s)	185
PfeI	GAWTC	1 cut(s)	152
PfoI	TCCNGGA	1 cut(s)	193
PkrI	GCNGC	3 cut(s)	72, 94, 189
PpuMI	RGGWCCY	1 cut(s)	197
Psp5II	RGGWCCY	1 cut(s)	197
Psp6I	CCWGG	2 cut(s)	55, 193
PspGI	CCWGG	2 cut(s)	55, 193
PspN4I	GGNNCC	2 cut(s)	77, 199
PspPI	GGNCC	1 cut(s)	197
PspPPI	RGGWCCY	1 cut(s)	197
PstI	CTGCAG	1 cut(s)	88
SatI	GCNGC	3 cut(s)	71, 93, 188
Sau3AI	GATC	3 cut(s)	12, 48, 136
Sau96I	GGNCC	1 cut(s)	197
ScrFI	CCNGG	2 cut(s)	57, 195
SetI	ASST	2 cut(s)	168, 254
SfcI	CTRYAG	1 cut(s)	84
SinI	GGWCC	1 cut(s)	197
SphI	GCATGC	1 cut(s)	30
SsiI	CCGC	2 cut(s)	73, 187
SspMI	CTAG	1 cut(s)	167
StyD4I	CCNGG	2 cut(s)	55, 193
TaaI	ACNGT	1 cut(s)	269
TaiI	ACGT	1 cut(s)	254
TauI	GCSGC	1 cut(s)	190
TfiI	GAWTC	1 cut(s)	152
TscAI	CASTG	2 cut(s)	70, 88
TseI	GCWGC	2 cut(s)	70, 92
TspDTI	ATGAA	1 cut(s)	140
TspRI	CASTG	2 cut(s)	70, 88
VpaK11BI	GGWCC	1 cut(s)	197
XceI	RCATGY	1 cut(s)	30
XspI	CTAG	1 cut(s)	167

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.