Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006209

Physical Location & Seq

Genomic Coordinates Forward (+)

9789691 .. 9791546

Gene Structure 1856 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G28080.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGACCAATATGGTTCCTCTTGAATCCTCAACGCTTTTCGGTGTTTACGGCGGTTTCACGGACTCGATGATGATGAGAGAAACAACTACCAACAATCAAGATCCTAGTGGAGATACATGTTCCGTCTCCGATCCAGCACCAGGTTCTACTGATTATTATAACATCTCTTCTTCTCCAGTGAAAGACGACGGAACGGCCCCAAAGAACGACGTCGTTTGTTCTATTAACGTAGACGATAATAAAGACAAATCTTGGCTCCGCTTAGGTATAGGCCCTGAGGAGAACACGGATGGCTCGTATAAGCTCCAACGTTGTTGTAGCAAAAACGGAAGTGGAAGAGAGAATTCATTAGAGCTGAGCTTGTTCTCTTCATCCTCAACCGCGGTTAGTAGTAGTATAGATCACCTACCGACGCAACCGTTGCAGCTGCCATATCATCATGATCAGTTATTGACGATGCGTGGACCGTCGTTGGTTTACAACCACCAATTAATGAAGCCTCAAACGTTATTAAATCGCGGCTTTTCGTTTCCATCTTCAAAGCCGTGGATACCTCAATATATGGCGCCGTTTAGACCGTCATCATTGAGTGACCGTGACGTCACTAATAATAATAGTCTTTCAAGAAGCTGTTGTGTGGATGAGGGAGGAGCTGGACCAAGCTCTGAGTTTAGGGTTCTTGATCCTCCAAGAAGACCACATTCTGGTCTTTGGTTTCTTCTTCAAGCTTCACAATTTCAGGAAAGGGAACCGTTCTTGCCTCAAGTAAATAAAAGCTACTTGAGAATCAAAGATGGGAGAATCACTGTTAGATTGTTAATTAAGTACCTCATGAAGAAACTTGAATTGGATAGCGAATCTGAGGTAAATATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

291

Amino Acids

32.4

Weight (kDa)

5.77

Isoelectric Point (pI)

51.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006209)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28080 AT1G28080 AT5G13250 AT5G13250
fragaria_vesca	FvH4_4g22950 FvH4_4g22950 FvH4_4g22950
malus_domestica	MD13G1127900.v1.1 MD16G1128300.v1.1
prunus_persica	Prupe.1G218100_v2.0.a1
pyrus_communis	pycom13g11080 pycom13g11090 pycom16g10880
rosa_chinensis	RchiOBHm_Chr4g0429231
rosa_laevigata	RLG00000007087
rosa_multiflora	Rmu_co8060918.1_g000001 Rmu_sc0000054.1_g000030 Rmu_sc0005338.1_g000002
rosa_roxburghii	Rroxscaffold_5G00370860
rosa_rugosa	Rorug04G0233800 Rorug04G0233900
rosa_samantha	Rh4AG289900 Rh4BG295700 Rh4CG311300 Rh4DG292700
rosa_wichuraiana	Rw4G025100 Rw5G007270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	159
AasI	GACNNNNNNGTC	1 cut(s)	599
AatII	GACGTC	2 cut(s)	213, 603
AccB1I	GGYRCC	1 cut(s)	565
AccB7I	CCANNNNNTGG	1 cut(s)	704
AccI	GTMKAC	1 cut(s)	231
AccII	CGCG	2 cut(s)	383, 519
AciI	CCGC	5 cut(s)	51, 259, 381, 383, 519
AclI	AACGTT	2 cut(s)	310, 506
AclWI	GGATC	3 cut(s)	95, 125, 677
AcsI	RAATTY	1 cut(s)	343
AcyI	GRCGYC	3 cut(s)	210, 566, 600
AfaI	GTAC	1 cut(s)	827
AfiI	CCNNNNNNNGG	2 cut(s)	140, 704
AflIII	ACRYGT	1 cut(s)	116
AgsI	TTSAA	5 cut(s)	23, 540, 624, 725, 845
AjnI	CCWGG	1 cut(s)	139
AjuI	GAANNNNNNNTTGG	2 cut(s)	830, 862
AluBI	AGCT	9 cut(s)	304, 355, 360, 427, 630, 653, 663, 728, 777
AluI	AGCT	9 cut(s)	304, 355, 360, 427, 630, 653, 663, 728, 777
Alw26I	GTCTC	1 cut(s)	130
AlwI	GGATC	3 cut(s)	95, 125, 677
AoxI	GGCC	2 cut(s)	195, 271
ApeKI	GCWGC	2 cut(s)	424, 427
ApoI	RAATTY	1 cut(s)	343
AseI	ATTAAT	1 cut(s)	491
AspLEI	GCGC	1 cut(s)	568
AspS9I	GGNCC	4 cut(s)	196, 272, 464, 656
AsuHPI	GGTGA	1 cut(s)	395
AvaII	GGWCC	2 cut(s)	464, 656
AxyI	CCTNAGG	1 cut(s)	276
BanI	GGYRCC	1 cut(s)	565
BbsI	GAAGAC	1 cut(s)	700
BbvI	GCAGC	2 cut(s)	414, 436
BccI	CCATC	3 cut(s)	284, 541, 788
BceAI	ACGGC	4 cut(s)	64, 210, 529, 553
BciT130I	CCWGG	1 cut(s)	141
BciVI	GTATCC	1 cut(s)	543
BclI	TGATCA	1 cut(s)	442
BcoDI	GTCTC	1 cut(s)	130
BfaI	CTAG	1 cut(s)	105
BfoI	RGCGCY	1 cut(s)	569
BfuI	GTATCC	1 cut(s)	543
BisI	GCNGC	3 cut(s)	425, 428, 520
BlpI	GCTNAGC	1 cut(s)	356
BlsI	GCNGC	3 cut(s)	426, 429, 521
Bme1390I	CCNGG	1 cut(s)	141
Bme18I	GGWCC	2 cut(s)	464, 656
BmgT120I	GGNCC	4 cut(s)	196, 272, 464, 656
BmiI	GGNNCC	5 cut(s)	15, 198, 257, 567, 750
BmrFI	CCNGG	1 cut(s)	141
BmsI	GCATC	1 cut(s)	447
BpiI	GAAGAC	1 cut(s)	700
BpmI	CTGGAG	1 cut(s)	159
Bpu10I	CCTNAGC	1 cut(s)	262
Bpu1102I	GCTNAGC	1 cut(s)	356
BpuEI	CTTGAG	2 cut(s)	747, 802
BsaHI	GRCGYC	3 cut(s)	210, 566, 600
BsaJI	CCNNGG	2 cut(s)	381, 545
Bsc4I	CCNNNNNNNGG	2 cut(s)	140, 704
Bse1I	ACTGG	1 cut(s)	176
Bse21I	CCTNAGG	1 cut(s)	276
BseBI	CCWGG	1 cut(s)	141
BseDI	CCNNGG	2 cut(s)	381, 545
BseGI	GGATG	3 cut(s)	295, 371, 646
BseLI	CCNNNNNNNGG	2 cut(s)	140, 704
BseMII	CTCAG	4 cut(s)	267, 347, 657, 852
BseNI	ACTGG	1 cut(s)	176
BseRI	GAGGAG	2 cut(s)	293, 663
BseXI	GCAGC	2 cut(s)	414, 436
Bsh1236I	CGCG	2 cut(s)	383, 519
BshFI	GGCC	2 cut(s)	197, 273
BshNI	GGYRCC	1 cut(s)	565
BslI	CCNNNNNNNGG	2 cut(s)	140, 704
BsmAI	GTCTC	1 cut(s)	130
BsmBI	CGTCTC	1 cut(s)	130
BsnI	GGCC	2 cut(s)	197, 273
Bsp143I	GATC	5 cut(s)	100, 130, 400, 442, 682
Bsp1720I	GCTNAGC	1 cut(s)	356
BspACI	CCGC	5 cut(s)	51, 259, 381, 383, 519
BspANI	GGCC	2 cut(s)	197, 273
BspCNI	CTCAG	4 cut(s)	268, 348, 658, 853
BspFNI	CGCG	2 cut(s)	383, 519
BspHI	TCATGA	2 cut(s)	439, 831
BspLI	GGNNCC	5 cut(s)	15, 198, 257, 567, 750
BspPI	GGATC	3 cut(s)	95, 125, 677
BspT107I	GGYRCC	1 cut(s)	565
BsrI	ACTGG	1 cut(s)	176
BssECI	CCNNGG	2 cut(s)	381, 545
BssMI	GATC	5 cut(s)	100, 130, 400, 442, 682
BssNI	GRCGYC	3 cut(s)	210, 566, 600
Bst2UI	CCWGG	1 cut(s)	141
Bst4CI	ACNGT	6 cut(s)	420, 468, 579, 596, 753, 808
Bst6I	CTCTTC	3 cut(s)	172, 331, 373
BstACI	GRCGYC	3 cut(s)	210, 566, 600
BstAPI	GCANNNNNTGC	1 cut(s)	421
BstDEI	CTNAG	5 cut(s)	262, 276, 356, 666, 861
BstDSI	CCRYGG	2 cut(s)	381, 545
BstF5I	GGATG	3 cut(s)	295, 371, 646
BstFNI	CGCG	2 cut(s)	383, 519
BstH2I	RGCGCY	1 cut(s)	569
BstHHI	GCGC	1 cut(s)	568
BstKTI	GATC	5 cut(s)	103, 133, 403, 445, 685
BstMAI	GTCTC	1 cut(s)	130
BstMBI	GATC	5 cut(s)	100, 130, 400, 442, 682
BstMWI	GCNNNNNNNGC	1 cut(s)	421
BstNI	CCWGG	1 cut(s)	141
BstNSI	RCATGY	1 cut(s)	120
BstSCI	CCNGG	1 cut(s)	139
BstUI	CGCG	2 cut(s)	383, 519
BstV1I	GCAGC	2 cut(s)	414, 436
BstV2I	GAAGAC	1 cut(s)	700
BstX2I	RGATCY	1 cut(s)	100
BstYI	RGATCY	1 cut(s)	100
Bsu36I	CCTNAGG	1 cut(s)	276
BsuI	GTATCC	1 cut(s)	543
BsuRI	GGCC	2 cut(s)	197, 273
BtgI	CCRYGG	2 cut(s)	381, 545
BtsCI	GGATG	3 cut(s)	295, 371, 646
BtsIMutI	CAGTG	2 cut(s)	183, 804
CciI	TCATGA	2 cut(s)	439, 831
CfoI	GCGC	1 cut(s)	568
Cfr13I	GGNCC	4 cut(s)	196, 272, 464, 656
Cfr42I	CCGCGG	1 cut(s)	384
CseI	GACGC	1 cut(s)	421
CsiI	ACCWGGT	1 cut(s)	139
Csp6I	GTAC	1 cut(s)	826
CviAII	CATG	3 cut(s)	117, 440, 832
CviQI	GTAC	1 cut(s)	826
DdeI	CTNAG	5 cut(s)	262, 276, 356, 666, 861
DinI	GGCGCC	1 cut(s)	567
DpnI	GATC	5 cut(s)	102, 132, 402, 444, 684
DpnII	GATC	5 cut(s)	100, 130, 400, 442, 682
DrdI	GACNNNNNNGTC	1 cut(s)	599
DseDI	GACNNNNNNGTC	1 cut(s)	599
Eam1104I	CTCTTC	3 cut(s)	172, 331, 373
EarI	CTCTTC	3 cut(s)	172, 331, 373
Eco47I	GGWCC	2 cut(s)	464, 656
Eco81I	CCTNAGG	1 cut(s)	276
EcoO109I	RGGNCCY	1 cut(s)	272
EcoRI	GAATTC	1 cut(s)	343
EcoRII	CCWGG	1 cut(s)	139
EgeI	GGCGCC	1 cut(s)	567
EheI	GGCGCC	1 cut(s)	567
Esp3I	CGTCTC	1 cut(s)	130
FaeI	CATG	3 cut(s)	120, 443, 835
FatI	CATG	3 cut(s)	116, 439, 831
FbaI	TGATCA	1 cut(s)	442
FblI	GTMKAC	1 cut(s)	231
Fnu4HI	GCNGC	3 cut(s)	425, 428, 520
FokI	GGATG	3 cut(s)	302, 358, 653
Fsp4HI	GCNGC	3 cut(s)	425, 428, 520
FspBI	CTAG	1 cut(s)	105
GlaI	GCGC	1 cut(s)	567
GluI	GCNGC	3 cut(s)	425, 428, 520
GsuI	CTGGAG	1 cut(s)	159
HaeII	RGCGCY	1 cut(s)	569
HaeIII	GGCC	2 cut(s)	197, 273
HgaI	GACGC	1 cut(s)	421
HhaI	GCGC	1 cut(s)	568
Hin1I	GRCGYC	3 cut(s)	210, 566, 600
Hin1II	CATG	3 cut(s)	120, 443, 835
Hin6I	GCGC	1 cut(s)	566
HinP1I	GCGC	1 cut(s)	566
HindIII	AAGCTT	1 cut(s)	726
HinfI	GANTC	5 cut(s)	23, 62, 786, 801, 857
HphI	GGTGA	1 cut(s)	395
Hpy166II	GTNNAC	4 cut(s)	46, 232, 464, 478
Hpy188I	TCNGA	3 cut(s)	130, 667, 862
Hpy188III	TCNNGA	7 cut(s)	20, 98, 440, 624, 680, 740, 832
Hpy8I	GTNNAC	4 cut(s)	46, 232, 464, 478
Hpy99I	CGWCG	5 cut(s)	191, 212, 215, 415, 472
HpyCH4III	ACNGT	6 cut(s)	420, 468, 579, 596, 753, 808
HpyCH4IV	ACGT	5 cut(s)	210, 228, 310, 506, 600
HpyCH4V	TGCA	1 cut(s)	424
HpyF10VI	GCNNNNNNNGC	1 cut(s)	421
HpyF3I	CTNAG	5 cut(s)	262, 276, 356, 666, 861
HpySE526I	ACGT	5 cut(s)	210, 228, 310, 506, 600
Hsp92I	GRCGYC	3 cut(s)	210, 566, 600
Hsp92II	CATG	3 cut(s)	120, 443, 835
HspAI	GCGC	1 cut(s)	566
KasI	GGCGCC	1 cut(s)	565
Ksp22I	TGATCA	1 cut(s)	442
KspI	CCGCGG	1 cut(s)	384
Kzo9I	GATC	5 cut(s)	100, 130, 400, 442, 682
LmnI	GCTCC	3 cut(s)	261, 309, 650
LpnPI	CCDG	8 cut(s)	126, 147, 153, 189, 288, 639, 690, 725
Lsp1109I	GCAGC	2 cut(s)	414, 436
LweI	GCATC	1 cut(s)	447
MabI	ACCWGGT	1 cut(s)	139
MaeI	CTAG	1 cut(s)	105
MaeII	ACGT	5 cut(s)	210, 228, 310, 506, 600
MaeIII	GTNAC	3 cut(s)	590, 596, 601
MalI	GATC	5 cut(s)	102, 132, 402, 444, 684
MboI	GATC	5 cut(s)	100, 130, 400, 442, 682
MboII	GAAGA	9 cut(s)	159, 162, 348, 360, 528, 705, 710, 713, 847
MflI	RGATCY	1 cut(s)	100
MluCI	AATT	5 cut(s)	343, 488, 734, 819, 845
Mly113I	GGCGCC	1 cut(s)	566
MlyI	GAGTC	1 cut(s)	56
MmeI	TCCRAC	1 cut(s)	331
MseI	TTAA	5 cut(s)	225, 491, 512, 818, 822
MspA1I	CMGCKG	2 cut(s)	383, 427
MspR9I	CCNGG	1 cut(s)	141
MvaI	CCWGG	1 cut(s)	141
MvnI	CGCG	2 cut(s)	383, 519
MwoI	GCNNNNNNNGC	1 cut(s)	421
NarI	GGCGCC	1 cut(s)	566
NdeII	GATC	5 cut(s)	100, 130, 400, 442, 682
NlaIII	CATG	3 cut(s)	120, 443, 835
NlaIV	GGNNCC	5 cut(s)	15, 198, 257, 567, 750
NmuCI	GTSAC	3 cut(s)	590, 596, 601
NspI	RCATGY	1 cut(s)	120
PacI	TTAATTAA	1 cut(s)	822
PagI	TCATGA	2 cut(s)	439, 831
PciI	ACATGT	1 cut(s)	116
PcsI	WCGNNNNNNNCGW	1 cut(s)	293
PfeI	GAWTC	4 cut(s)	23, 786, 801, 857
PflMI	CCANNNNNTGG	1 cut(s)	704
PkrI	GCNGC	3 cut(s)	426, 429, 521
PleI	GAGTC	1 cut(s)	56
PluTI	GGCGCC	1 cut(s)	569
PpsI	GAGTC	1 cut(s)	56
PscI	ACATGT	1 cut(s)	116
PshBI	ATTAAT	1 cut(s)	491
PsiI	TTATAA	1 cut(s)	159
Psp1406I	AACGTT	2 cut(s)	310, 506
Psp6I	CCWGG	1 cut(s)	139
PspGI	CCWGG	1 cut(s)	139
PspN4I	GGNNCC	5 cut(s)	15, 198, 257, 567, 750
PspPI	GGNCC	4 cut(s)	196, 272, 464, 656
PsuI	RGATCY	1 cut(s)	100
PvuII	CAGCTG	1 cut(s)	427
RsaI	GTAC	1 cut(s)	827
RsaNI	GTAC	1 cut(s)	826
SacII	CCGCGG	1 cut(s)	384
SaqAI	TTAA	5 cut(s)	225, 491, 512, 818, 822
SatI	GCNGC	3 cut(s)	425, 428, 520
Sau3AI	GATC	5 cut(s)	100, 130, 400, 442, 682
Sau96I	GGNCC	4 cut(s)	196, 272, 464, 656
SchI	GAGTC	1 cut(s)	56
ScrFI	CCNGG	1 cut(s)	141
SexAI	ACCWGGT	1 cut(s)	139
SfaNI	GCATC	1 cut(s)	447
SfoI	GGCGCC	1 cut(s)	567
Sfr303I	CCGCGG	1 cut(s)	384
SgrBI	CCGCGG	1 cut(s)	384
SinI	GGWCC	2 cut(s)	464, 656
SmlI	CTYRAG	2 cut(s)	762, 781
SmoI	CTYRAG	2 cut(s)	762, 781
Sse9I	AATT	5 cut(s)	343, 488, 734, 819, 845
SsiI	CCGC	5 cut(s)	51, 259, 381, 383, 519
SspDI	GGCGCC	1 cut(s)	565
SspMI	CTAG	1 cut(s)	105
StyD4I	CCNGG	1 cut(s)	139
TaaI	ACNGT	6 cut(s)	420, 468, 579, 596, 753, 808
TaiI	ACGT	5 cut(s)	213, 231, 313, 509, 603
TaqI	TCGA	1 cut(s)	65
TasI	AATT	5 cut(s)	343, 488, 734, 819, 845
TauI	GCSGC	1 cut(s)	522
TfiI	GAWTC	4 cut(s)	23, 786, 801, 857
Tru1I	TTAA	5 cut(s)	225, 491, 512, 818, 822
Tru9I	TTAA	5 cut(s)	225, 491, 512, 818, 822
TscAI	CASTG	2 cut(s)	183, 811
TseFI	GTSAC	3 cut(s)	590, 596, 601
TseI	GCWGC	2 cut(s)	424, 427
Tsp45I	GTSAC	3 cut(s)	590, 596, 601
TspDTI	ATGAA	4 cut(s)	336, 360, 509, 848
TspGWI	ACGGA	5 cut(s)	74, 112, 204, 302, 342
TspRI	CASTG	2 cut(s)	183, 811
Van91I	CCANNNNNTGG	1 cut(s)	704
VpaK11BI	GGWCC	2 cut(s)	464, 656
VspI	ATTAAT	1 cut(s)	491
XapI	RAATTY	1 cut(s)	343
XceI	RCATGY	1 cut(s)	120
XmiI	GTMKAC	1 cut(s)	231
XspI	CTAG	1 cut(s)	105
ZraI	GACGTC	2 cut(s)	211, 601

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.