Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0006209

Physical Location & Seq

Genomic Coordinates Reverse (-)

57293729 .. 57302834

Gene Structure 9106 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG311300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

ATGACCATGGTTCCTTCTGCACATCATCAAAACTTATCCAGACAACAACAACATCCTCATCTCTACGGTGGTTATGGTGGCTGCGGTGCCAATTATTACAACAATACGGCGCCGGACGACGAGAGCTTTGGTGGTCATCTTATGAATCAAGTAGAGGAAGGTGGTTATGATCAGTATAGTTATTGTAATAACAATAATAATACTATTACTGATCAATCTTACTTATTAGCATCTTCCGATCTAGTAGTCGTTAATGGTCCGATGGCCGAAGATGAATCAAGAACTAACAGTCTTAACAACGAAGCAGAAGCCGAAGCGGGGTCAAGTTCTAAAGCTCCTGTAGATGAAGATCAGAGAGACGAGAGATGGCTCCAATTGAGTATAGGCGGCCACACCGCTACCAGTGCAGACGTCCAAGCTCCGGAAAGAAGAAGCTCGTTAAGGGGTTCATCATCGGCATCCGGATTGATTGAGCTTGATCTGTTATCAGCAAATATATCGTCGCCGTCGTCGTCATCGTCACGGCAATTTCAGTTGCAACAAGCAGCCAGGTCTTCCACGACTCCCATGTTTCATGTTCCCGATCATCATCATCAAATTCGTGTTCCTAATTTCGGCACTAATTTGATGAACACTACGTCTAATTTATATTTTCAACACCCCGGAATGGGAATGGGAATGGGAATGAGTAGTTCTTTGCCGCCGAGCTTTCCTCAACACCATCACCAGGAGGTTAACTGGGGATTTAGGCCATTGATCCCTCATCATAATAATCATATAGGGAATAGTGCTTCAACTTCTACCTCTTCCTCTTCTTTTATGCAACTGGGACCAGCATCCTCCTCCTATTTTGCACGCCCATTTCAACTTCAACATCATCATCTTCATCATGGTGGTGGTGCTGGGCCGAGCTTAGAATTCAGAGTTGTTGATCCTCCTCGGCGGCCCCAGTCTGGCATCTGGTTTATGCTACAAGCCTCACAAAATCAAGAAAAAGAACCGTTCTTGCCCCAGATACCTAAAAGCTACCTCAGGATCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

347

Amino Acids

38.19

Weight (kDa)

6.16

Isoelectric Point (pI)

60.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006209)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28080 AT1G28080 AT5G13250 AT5G13250
fragaria_vesca	FvH4_4g22950 FvH4_4g22950 FvH4_4g22950
malus_domestica	MD13G1127900.v1.1 MD16G1128300.v1.1
prunus_persica	Prupe.1G218100_v2.0.a1
pyrus_communis	pycom13g11080 pycom13g11090 pycom16g10880
rosa_chinensis	RchiOBHm_Chr4g0429231
rosa_laevigata	RLG00000007087
rosa_multiflora	Rmu_co8060918.1_g000001 Rmu_sc0000054.1_g000030 Rmu_sc0005338.1_g000002
rosa_roxburghii	Rroxscaffold_5G00370860
rosa_rugosa	Rorug04G0233800 Rorug04G0233900
rosa_samantha	Rh4AG289900 Rh4BG295700 Rh4CG311300 Rh4DG292700
rosa_wichuraiana	Rw4G025100 Rw5G007270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	414
AccB1I	GGYRCC	2 cut(s)	86, 109
AccIII	TCCGGA	2 cut(s)	421, 461
AciI	CCGC	6 cut(s)	84, 317, 387, 396, 701, 943
AclWI	GGATC	3 cut(s)	751, 926, 1043
AcoI	YGGCCR	2 cut(s)	264, 388
AcsI	RAATTY	2 cut(s)	597, 917
AcyI	GRCGYC	2 cut(s)	110, 411
AfiI	CCNNNNNNNGG	7 cut(s)	318, 421, 614, 667, 668, 727, 953
AgsI	TTSAA	4 cut(s)	656, 795, 866, 872
AjnI	CCWGG	2 cut(s)	548, 726
AluBI	AGCT	8 cut(s)	126, 335, 419, 435, 475, 708, 912, 1026
AluI	AGCT	8 cut(s)	126, 335, 419, 435, 475, 708, 912, 1026
Alw26I	GTCTC	1 cut(s)	351
AlwI	GGATC	3 cut(s)	751, 926, 1043
Aor13HI	TCCGGA	2 cut(s)	421, 461
AoxI	GGCC	5 cut(s)	264, 388, 749, 905, 944
ApeKI	GCWGC	2 cut(s)	81, 545
ApoI	RAATTY	2 cut(s)	597, 917
ArsI	GACNNNNNNTTYG	4 cut(s)	110, 142, 485, 517
AspLEI	GCGC	1 cut(s)	112
AspS9I	GGNCC	4 cut(s)	257, 830, 905, 945
AsuC2I	CCSGG	1 cut(s)	663
AsuHPI	GGTGA	1 cut(s)	716
AvaII	GGWCC	2 cut(s)	257, 830
AxyI	CCTNAGG	1 cut(s)	1031
BanI	GGYRCC	2 cut(s)	86, 109
BbsI	GAAGAC	1 cut(s)	546
BbvI	GCAGC	2 cut(s)	68, 557
BccI	CCATC	3 cut(s)	256, 360, 729
BceAI	ACGGC	3 cut(s)	123, 490, 539
BcgI	CGANNNNNNTGC	2 cut(s)	480, 514
BciT130I	CCWGG	2 cut(s)	550, 728
BclI	TGATCA	2 cut(s)	169, 211
BcnI	CCSGG	1 cut(s)	663
BcoDI	GTCTC	1 cut(s)	351
BfaI	CTAG	1 cut(s)	242
BfmI	CTRYAG	1 cut(s)	339
BfoI	RGCGCY	1 cut(s)	113
BisI	GCNGC	5 cut(s)	82, 388, 546, 701, 944
BlsI	GCNGC	5 cut(s)	83, 389, 547, 702, 945
Bme1390I	CCNGG	3 cut(s)	550, 663, 728
Bme18I	GGWCC	2 cut(s)	257, 830
BmgT120I	GGNCC	4 cut(s)	257, 830, 905, 945
BmiI	GGNNCC	6 cut(s)	12, 88, 111, 371, 831, 947
BmrFI	CCNGG	3 cut(s)	550, 663, 728
BmrI	ACTGGG	3 cut(s)	748, 836, 943
BmsI	GCATC	4 cut(s)	239, 467, 845, 966
BmuI	ACTGGG	3 cut(s)	748, 836, 943
BpiI	GAAGAC	1 cut(s)	546
BplI	GAGNNNNNCTC	2 cut(s)	697, 729
BpuMI	CCSGG	1 cut(s)	663
BsaBI	GATNNNNATC	2 cut(s)	348, 588
BsaHI	GRCGYC	2 cut(s)	110, 411
BsaJI	CCNNGG	3 cut(s)	6, 661, 938
BsaWI	WCCGGW	2 cut(s)	421, 461
Bsc4I	CCNNNNNNNGG	7 cut(s)	318, 421, 614, 667, 668, 727, 953
Bse1I	ACTGG	4 cut(s)	402, 743, 831, 949
Bse21I	CCTNAGG	1 cut(s)	1031
Bse8I	GATNNNNATC	2 cut(s)	348, 588
BseAI	TCCGGA	2 cut(s)	421, 461
BseBI	CCWGG	2 cut(s)	550, 728
BseDI	CCNNGG	3 cut(s)	6, 661, 938
BseGI	GGATG	3 cut(s)	52, 458, 836
BseJI	GATNNNNATC	2 cut(s)	348, 588
BseLI	CCNNNNNNNGG	7 cut(s)	318, 421, 614, 667, 668, 727, 953
BseNI	ACTGG	4 cut(s)	402, 743, 831, 949
BseRI	GAGGAG	2 cut(s)	832, 927
BseXI	GCAGC	2 cut(s)	68, 557
BseYI	CCCAGC	1 cut(s)	902
BsgI	GTGCAG	1 cut(s)	426
BshFI	GGCC	5 cut(s)	266, 390, 751, 907, 946
BshNI	GGYRCC	2 cut(s)	86, 109
BsiSI	CCGG	4 cut(s)	113, 422, 462, 663
BslFI	GGGAC	1 cut(s)	843
BslI	CCNNNNNNNGG	7 cut(s)	318, 421, 614, 667, 668, 727, 953
BsmAI	GTCTC	1 cut(s)	351
BsmBI	CGTCTC	1 cut(s)	351
BsmFI	GGGAC	1 cut(s)	843
BsnI	GGCC	5 cut(s)	266, 390, 751, 907, 946
Bsp13I	TCCGGA	2 cut(s)	421, 461
Bsp143I	GATC	9 cut(s)	169, 211, 238, 349, 478, 583, 756, 931, 1035
Bsp19I	CCATGG	1 cut(s)	6
BspACI	CCGC	6 cut(s)	84, 317, 387, 396, 701, 943
BspANI	GGCC	5 cut(s)	266, 390, 751, 907, 946
BspCNI	CTCAG	1 cut(s)	1044
BspEI	TCCGGA	2 cut(s)	421, 461
BspLI	GGNNCC	6 cut(s)	12, 88, 111, 371, 831, 947
BspPI	GGATC	3 cut(s)	751, 926, 1043
BspT107I	GGYRCC	2 cut(s)	86, 109
BsrI	ACTGG	4 cut(s)	402, 743, 831, 949
BssECI	CCNNGG	3 cut(s)	6, 661, 938
BssMI	GATC	9 cut(s)	169, 211, 238, 349, 478, 583, 756, 931, 1035
BssNI	GRCGYC	2 cut(s)	110, 411
BssT1I	CCWWGG	1 cut(s)	6
Bst2UI	CCWGG	2 cut(s)	550, 728
Bst4CI	ACNGT	3 cut(s)	68, 290, 1002
Bst6I	CTCTTC	2 cut(s)	811, 817
BstACI	GRCGYC	2 cut(s)	110, 411
BstC8I	GCNNGC	1 cut(s)	856
BstDEI	CTNAG	2 cut(s)	913, 1031
BstDSI	CCRYGG	1 cut(s)	6
BstF5I	GGATG	3 cut(s)	52, 458, 836
BstH2I	RGCGCY	1 cut(s)	113
BstHHI	GCGC	1 cut(s)	112
BstKTI	GATC	9 cut(s)	172, 214, 241, 352, 481, 586, 759, 934, 1038
BstMAI	GTCTC	1 cut(s)	351
BstMBI	GATC	9 cut(s)	169, 211, 238, 349, 478, 583, 756, 931, 1035
BstMWI	GCNNNNNNNGC	1 cut(s)	404
BstNI	CCWGG	2 cut(s)	550, 728
BstSCI	CCNGG	3 cut(s)	548, 661, 726
BstSFI	CTRYAG	1 cut(s)	339
BstV1I	GCAGC	2 cut(s)	68, 557
BstV2I	GAAGAC	1 cut(s)	546
Bsu36I	CCTNAGG	1 cut(s)	1031
BsuRI	GGCC	5 cut(s)	266, 390, 751, 907, 946
BtgI	CCRYGG	1 cut(s)	6
BtsCI	GGATG	3 cut(s)	52, 458, 836
BtsIMutI	CAGTG	1 cut(s)	409
Cac8I	GCNNGC	1 cut(s)	856
CfoI	GCGC	1 cut(s)	112
Cfr13I	GGNCC	4 cut(s)	257, 830, 905, 945
CviAII	CATG	4 cut(s)	7, 568, 575, 890
DdeI	CTNAG	2 cut(s)	913, 1031
DinI	GGCGCC	1 cut(s)	111
DpnI	GATC	9 cut(s)	171, 213, 240, 351, 480, 585, 758, 933, 1037
DpnII	GATC	9 cut(s)	169, 211, 238, 349, 478, 583, 756, 931, 1035
EaeI	YGGCCR	2 cut(s)	264, 388
Eam1104I	CTCTTC	2 cut(s)	811, 817
EarI	CTCTTC	2 cut(s)	811, 817
Eco130I	CCWWGG	1 cut(s)	6
Eco47I	GGWCC	2 cut(s)	257, 830
Eco81I	CCTNAGG	1 cut(s)	1031
EcoRI	GAATTC	1 cut(s)	917
EcoRII	CCWGG	2 cut(s)	548, 726
EcoT14I	CCWWGG	1 cut(s)	6
EgeI	GGCGCC	1 cut(s)	111
EheI	GGCGCC	1 cut(s)	111
ErhI	CCWWGG	1 cut(s)	6
Esp3I	CGTCTC	1 cut(s)	351
FaeI	CATG	4 cut(s)	10, 571, 578, 893
FaqI	GGGAC	1 cut(s)	843
FatI	CATG	4 cut(s)	6, 567, 574, 889
FauI	CCCGC	1 cut(s)	310
FbaI	TGATCA	2 cut(s)	169, 211
Fnu4HI	GCNGC	5 cut(s)	82, 388, 546, 701, 944
FokI	GGATG	3 cut(s)	39, 445, 823
Fsp4HI	GCNGC	5 cut(s)	82, 388, 546, 701, 944
FspBI	CTAG	1 cut(s)	242
GlaI	GCGC	1 cut(s)	111
GluI	GCNGC	5 cut(s)	82, 388, 546, 701, 944
GsaI	CCCAGC	1 cut(s)	906
HaeII	RGCGCY	1 cut(s)	113
HaeIII	GGCC	5 cut(s)	266, 390, 751, 907, 946
HapII	CCGG	4 cut(s)	113, 422, 462, 663
HhaI	GCGC	1 cut(s)	112
Hin1I	GRCGYC	2 cut(s)	110, 411
Hin1II	CATG	4 cut(s)	10, 571, 578, 893
Hin6I	GCGC	1 cut(s)	110
HinP1I	GCGC	1 cut(s)	110
HincII	GTYRAC	1 cut(s)	736
HindII	GTYRAC	1 cut(s)	736
HinfI	GANTC	3 cut(s)	145, 275, 562
HpaI	GTTAAC	1 cut(s)	736
HpaII	CCGG	4 cut(s)	113, 422, 462, 663
HphI	GGTGA	1 cut(s)	716
Hpy166II	GTNNAC	1 cut(s)	736
Hpy188I	TCNGA	4 cut(s)	238, 261, 354, 923
Hpy188III	TCNNGA	7 cut(s)	39, 279, 422, 462, 581, 989, 1033
Hpy8I	GTNNAC	1 cut(s)	736
Hpy99I	CGWCG	4 cut(s)	122, 505, 511, 514
HpyAV	CCTTC	2 cut(s)	24, 152
HpyCH4III	ACNGT	3 cut(s)	68, 290, 1002
HpyCH4IV	ACGT	2 cut(s)	411, 638
HpyCH4V	TGCA	5 cut(s)	20, 407, 538, 823, 854
HpyF10VI	GCNNNNNNNGC	1 cut(s)	404
HpyF3I	CTNAG	2 cut(s)	913, 1031
HpySE526I	ACGT	2 cut(s)	411, 638
Hsp92I	GRCGYC	2 cut(s)	110, 411
Hsp92II	CATG	4 cut(s)	10, 571, 578, 893
HspAI	GCGC	1 cut(s)	110
KasI	GGCGCC	1 cut(s)	109
Kpn2I	TCCGGA	2 cut(s)	421, 461
Ksp22I	TGATCA	2 cut(s)	169, 211
KspAI	GTTAAC	1 cut(s)	736
Kzo9I	GATC	9 cut(s)	169, 211, 238, 349, 478, 583, 756, 931, 1035
LmnI	GCTCC	3 cut(s)	340, 375, 424
Lsp1109I	GCAGC	2 cut(s)	68, 557
LweI	GCATC	4 cut(s)	239, 467, 845, 966
MaeI	CTAG	1 cut(s)	242
MaeII	ACGT	2 cut(s)	411, 638
MaeIII	GTNAC	1 cut(s)	519
MalI	GATC	9 cut(s)	171, 213, 240, 351, 480, 585, 758, 933, 1037
MboI	GATC	9 cut(s)	169, 211, 238, 349, 478, 583, 756, 931, 1035
MboII	GAAGA	8 cut(s)	225, 281, 359, 441, 546, 798, 804, 875
MfeI	CAATTG	1 cut(s)	374
MluCI	AATT	8 cut(s)	91, 374, 527, 597, 610, 622, 643, 917
Mly113I	GGCGCC	1 cut(s)	110
MlyI	GAGTC	1 cut(s)	556
MroI	TCCGGA	2 cut(s)	421, 461
MseI	TTAA	4 cut(s)	252, 294, 440, 735
MslI	CAYNNNNRTG	2 cut(s)	891, 894
MspI	CCGG	4 cut(s)	113, 422, 462, 663
MspR9I	CCNGG	3 cut(s)	550, 663, 728
MunI	CAATTG	1 cut(s)	374
MvaI	CCWGG	2 cut(s)	550, 728
MwoI	GCNNNNNNNGC	1 cut(s)	404
NarI	GGCGCC	1 cut(s)	110
NciI	CCSGG	1 cut(s)	663
NcoI	CCATGG	1 cut(s)	6
NdeII	GATC	9 cut(s)	169, 211, 238, 349, 478, 583, 756, 931, 1035
NlaIII	CATG	4 cut(s)	10, 571, 578, 893
NlaIV	GGNNCC	6 cut(s)	12, 88, 111, 371, 831, 947
NmeAIII	GCCGAG	3 cut(s)	729, 919, 933
NmuCI	GTSAC	1 cut(s)	519
PcsI	WCGNNNNNNNCGW	3 cut(s)	506, 509, 515
PfeI	GAWTC	2 cut(s)	145, 275
PkrI	GCNGC	5 cut(s)	83, 389, 547, 702, 945
PleI	GAGTC	1 cut(s)	556
PluTI	GGCGCC	1 cut(s)	113
PpsI	GAGTC	1 cut(s)	556
Psp6I	CCWGG	2 cut(s)	548, 726
PspFI	CCCAGC	1 cut(s)	902
PspGI	CCWGG	2 cut(s)	548, 726
PspN4I	GGNNCC	6 cut(s)	12, 88, 111, 371, 831, 947
PspPI	GGNCC	4 cut(s)	257, 830, 905, 945
RseI	CAYNNNNRTG	2 cut(s)	891, 894
SaqAI	TTAA	4 cut(s)	252, 294, 440, 735
SatI	GCNGC	5 cut(s)	82, 388, 546, 701, 944
Sau3AI	GATC	9 cut(s)	169, 211, 238, 349, 478, 583, 756, 931, 1035
Sau96I	GGNCC	4 cut(s)	257, 830, 905, 945
SchI	GAGTC	1 cut(s)	556
ScrFI	CCNGG	3 cut(s)	550, 663, 728
SfaNI	GCATC	4 cut(s)	239, 467, 845, 966
SfcI	CTRYAG	1 cut(s)	339
SfoI	GGCGCC	1 cut(s)	111
SinI	GGWCC	2 cut(s)	257, 830
SmiMI	CAYNNNNRTG	2 cut(s)	891, 894
Sse9I	AATT	8 cut(s)	91, 374, 527, 597, 610, 622, 643, 917
SsiI	CCGC	6 cut(s)	84, 317, 387, 396, 701, 943
SspDI	GGCGCC	1 cut(s)	109
SspMI	CTAG	1 cut(s)	242
StyD4I	CCNGG	3 cut(s)	548, 661, 726
StyI	CCWWGG	1 cut(s)	6
TaaI	ACNGT	3 cut(s)	68, 290, 1002
TaiI	ACGT	2 cut(s)	414, 641
TasI	AATT	8 cut(s)	91, 374, 527, 597, 610, 622, 643, 917
TauI	GCSGC	3 cut(s)	390, 703, 946
TfiI	GAWTC	2 cut(s)	145, 275
Tru1I	TTAA	4 cut(s)	252, 294, 440, 735
Tru9I	TTAA	4 cut(s)	252, 294, 440, 735
TscAI	CASTG	1 cut(s)	409
TseFI	GTSAC	1 cut(s)	519
TseI	GCWGC	2 cut(s)	81, 545
Tsp45I	GTSAC	1 cut(s)	519
TspDTI	ATGAA	7 cut(s)	158, 288, 360, 438, 563, 644, 875
TspRI	CASTG	1 cut(s)	409
VpaK11BI	GGWCC	2 cut(s)	257, 830
XapI	RAATTY	2 cut(s)	597, 917
XspI	CTAG	1 cut(s)	242
ZraI	GACGTC	1 cut(s)	412

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.