NAD(P)H-binding
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G28080 AT1G28080 AT5G13250 AT5G13250 |
| fragaria_vesca | FvH4_4g22950 FvH4_4g22950 FvH4_4g22950 |
| malus_domestica | MD13G1127900.v1.1 MD16G1128300.v1.1 |
| prunus_persica | Prupe.1G218100_v2.0.a1 |
| pyrus_communis | pycom13g11080 pycom13g11090 pycom16g10880 |
| rosa_chinensis | RchiOBHm_Chr4g0429231 |
| rosa_laevigata | RLG00000007087 |
| rosa_multiflora | Rmu_co8060918.1_g000001 Rmu_sc0000054.1_g000030 Rmu_sc0005338.1_g000002 |
| rosa_roxburghii | Rroxscaffold_5G00370860 |
| rosa_rugosa | Rorug04G0233800 Rorug04G0233900 |
| rosa_samantha | Rh4AG289900 Rh4BG295700 Rh4CG311300 Rh4DG292700 |
| rosa_wichuraiana | Rw4G025100 Rw5G007270 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1538 |
| AatII | GACGTC | 1 cut(s) | 414 |
| AccB1I | GGYRCC | 2 cut(s) | 86, 109 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 2056 |
| AccIII | TCCGGA | 1 cut(s) | 461 |
| AciI | CCGC | 7 cut(s) | 84, 317, 387, 701, 943, 1448, 2075 |
| AclWI | GGATC | 5 cut(s) | 751, 926, 1043, 1507, 1613 |
| AcoI | YGGCCR | 2 cut(s) | 264, 388 |
| AcsI | RAATTY | 2 cut(s) | 597, 917 |
| AcuI | CTGAAG | 1 cut(s) | 2111 |
| AcyI | GRCGYC | 2 cut(s) | 110, 411 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 318, 421, 614, 667, 668, 727, 953, 1272, 2056 |
| AhlI | ACTAGT | 1 cut(s) | 1786 |
| AjnI | CCWGG | 3 cut(s) | 548, 726, 2028 |
| Alw21I | GWGCWC | 1 cut(s) | 1305 |
| Alw26I | GTCTC | 2 cut(s) | 1177, 2091 |
| AlwI | GGATC | 5 cut(s) | 751, 926, 1043, 1507, 1613 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1622 |
| Aor13HI | TCCGGA | 1 cut(s) | 461 |
| AoxI | GGCC | 7 cut(s) | 264, 388, 749, 905, 944, 1166, 1747 |
| ApeKI | GCWGC | 4 cut(s) | 81, 545, 1553, 1682 |
| ApoI | RAATTY | 2 cut(s) | 597, 917 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 110, 142, 485, 517 |
| AseI | ATTAAT | 1 cut(s) | 1460 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 1335, 1788, 1818, 2126 |
| AspLEI | GCGC | 1 cut(s) | 112 |
| AspS9I | GGNCC | 8 cut(s) | 830, 905, 945, 1153, 1276, 1513, 1748, 1809 |
| AsuC2I | CCSGG | 2 cut(s) | 663, 1734 |
| AsuHPI | GGTGA | 1 cut(s) | 1753 |
| AvaII | GGWCC | 5 cut(s) | 830, 1153, 1276, 1513, 1809 |
| AxyI | CCTNAGG | 2 cut(s) | 1031, 1170 |
| BanI | GGYRCC | 2 cut(s) | 86, 109 |
| BauI | CACGAG | 1 cut(s) | 1961 |
| BbsI | GAAGAC | 1 cut(s) | 546 |
| Bbv12I | GWGCWC | 1 cut(s) | 1305 |
| BbvCI | CCTCAGC | 1 cut(s) | 1674 |
| BbvI | GCAGC | 4 cut(s) | 68, 557, 1565, 1669 |
| BccI | CCATC | 7 cut(s) | 256, 360, 1037, 1313, 1385, 1731, 1900 |
| BceAI | ACGGC | 3 cut(s) | 123, 490, 539 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 480, 514 |
| BciT130I | CCWGG | 3 cut(s) | 550, 728, 2030 |
| BciVI | GTATCC | 2 cut(s) | 2044, 2089 |
| BclI | TGATCA | 3 cut(s) | 169, 211, 1285 |
| BcnI | CCSGG | 2 cut(s) | 663, 1734 |
| BcoDI | GTCTC | 2 cut(s) | 1177, 2091 |
| BcuI | ACTAGT | 1 cut(s) | 1786 |
| BfaI | CTAG | 5 cut(s) | 242, 1226, 1787, 1877, 1899 |
| BfmI | CTRYAG | 2 cut(s) | 339, 1834 |
| BfoI | RGCGCY | 1 cut(s) | 113 |
| BfuI | GTATCC | 2 cut(s) | 2044, 2089 |
| BglII | AGATCT | 1 cut(s) | 1965 |
| BisI | GCNGC | 7 cut(s) | 82, 388, 546, 701, 944, 1554, 1683 |
| BlsI | GCNGC | 7 cut(s) | 83, 389, 547, 702, 945, 1555, 1684 |
| Bme1390I | CCNGG | 5 cut(s) | 550, 663, 728, 1734, 2030 |
| Bme18I | GGWCC | 5 cut(s) | 830, 1153, 1276, 1513, 1809 |
| BmgT120I | GGNCC | 8 cut(s) | 830, 905, 945, 1153, 1276, 1513, 1748, 1809 |
| BmiI | GGNNCC | 9 cut(s) | 12, 88, 111, 371, 831, 947, 1277, 1278, 1810 |
| BmrFI | CCNGG | 5 cut(s) | 550, 663, 728, 1734, 2030 |
| BmrI | ACTGGG | 3 cut(s) | 748, 836, 943 |
| BmsI | GCATC | 7 cut(s) | 239, 467, 845, 966, 1211, 1226, 1427 |
| BmuI | ACTGGG | 3 cut(s) | 748, 836, 943 |
| BpiI | GAAGAC | 1 cut(s) | 546 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 697, 729 |
| BpmI | CTGGAG | 2 cut(s) | 1115, 1201 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1674 |
| BpuMI | CCSGG | 2 cut(s) | 663, 1734 |
| Bsa29I | ATCGAT | 1 cut(s) | 1599 |
| BsaBI | GATNNNNATC | 2 cut(s) | 348, 588 |
| BsaHI | GRCGYC | 2 cut(s) | 110, 411 |
| BsaJI | CCNNGG | 5 cut(s) | 6, 661, 938, 1495, 2037 |
| BsaWI | WCCGGW | 1 cut(s) | 461 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 318, 421, 614, 667, 668, 727, 953, 1272, 2056 |
| Bse1I | ACTGG | 6 cut(s) | 402, 743, 831, 949, 1184, 1516 |
| Bse21I | CCTNAGG | 2 cut(s) | 1031, 1170 |
| Bse8I | GATNNNNATC | 2 cut(s) | 348, 588 |
| BseAI | TCCGGA | 1 cut(s) | 461 |
| BseBI | CCWGG | 3 cut(s) | 550, 728, 2030 |
| BseCI | ATCGAT | 1 cut(s) | 1599 |
| BseDI | CCNNGG | 5 cut(s) | 6, 661, 938, 1495, 2037 |
| BseGI | GGATG | 8 cut(s) | 52, 458, 836, 1048, 1056, 1418, 1541, 1742 |
| BseJI | GATNNNNATC | 2 cut(s) | 348, 588 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 318, 421, 614, 667, 668, 727, 953, 1272, 2056 |
| BseMII | CTCAG | 3 cut(s) | 1045, 1161, 1665 |
| BseNI | ACTGG | 6 cut(s) | 402, 743, 831, 949, 1184, 1516 |
| BseRI | GAGGAG | 2 cut(s) | 832, 927 |
| BseXI | GCAGC | 4 cut(s) | 68, 557, 1565, 1669 |
| BseYI | CCCAGC | 1 cut(s) | 902 |
| BsgI | GTGCAG | 1 cut(s) | 426 |
| BshFI | GGCC | 7 cut(s) | 266, 390, 751, 907, 946, 1168, 1749 |
| BshNI | GGYRCC | 2 cut(s) | 86, 109 |
| BshVI | ATCGAT | 1 cut(s) | 1599 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1305 |
| BsiSI | CCGG | 4 cut(s) | 113, 462, 663, 1733 |
| BslFI | GGGAC | 3 cut(s) | 843, 1289, 1822 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 318, 421, 614, 667, 668, 727, 953, 1272, 2056 |
| BsmAI | GTCTC | 2 cut(s) | 1177, 2091 |
| BsmFI | GGGAC | 3 cut(s) | 843, 1289, 1822 |
| BsnI | GGCC | 7 cut(s) | 266, 390, 751, 907, 946, 1168, 1749 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1305 |
| Bsp13I | TCCGGA | 1 cut(s) | 461 |
| Bsp19I | CCATGG | 1 cut(s) | 6 |
| BspACI | CCGC | 7 cut(s) | 84, 317, 387, 701, 943, 1448, 2075 |
| BspANI | GGCC | 7 cut(s) | 266, 390, 751, 907, 946, 1168, 1749 |
| BspCNI | CTCAG | 3 cut(s) | 1044, 1162, 1666 |
| BspDI | ATCGAT | 1 cut(s) | 1599 |
| BspEI | TCCGGA | 1 cut(s) | 461 |
| BspLI | GGNNCC | 9 cut(s) | 12, 88, 111, 371, 831, 947, 1277, 1278, 1810 |
| BspPI | GGATC | 5 cut(s) | 751, 926, 1043, 1507, 1613 |
| BspT107I | GGYRCC | 2 cut(s) | 86, 109 |
| BsrI | ACTGG | 6 cut(s) | 402, 743, 831, 949, 1184, 1516 |
| BssECI | CCNNGG | 5 cut(s) | 6, 661, 938, 1495, 2037 |
| BssNI | GRCGYC | 2 cut(s) | 110, 411 |
| BssSI | CACGAG | 1 cut(s) | 1961 |
| BssT1I | CCWWGG | 3 cut(s) | 6, 1495, 2037 |
| Bst2BI | CACGAG | 1 cut(s) | 1961 |
| Bst2UI | CCWGG | 3 cut(s) | 550, 728, 2030 |
| Bst4CI | ACNGT | 8 cut(s) | 68, 290, 1002, 1057, 1258, 1780, 1937, 2101 |
| Bst6I | CTCTTC | 2 cut(s) | 811, 817 |
| BstACI | GRCGYC | 2 cut(s) | 110, 411 |
| BstC8I | GCNNGC | 3 cut(s) | 856, 1452, 1470 |
| BstDEI | CTNAG | 4 cut(s) | 913, 1031, 1170, 1674 |
| BstDSI | CCRYGG | 1 cut(s) | 6 |
| BstF5I | GGATG | 8 cut(s) | 52, 458, 836, 1048, 1056, 1418, 1541, 1742 |
| BstH2I | RGCGCY | 1 cut(s) | 113 |
| BstHHI | GCGC | 1 cut(s) | 112 |
| BstMAI | GTCTC | 2 cut(s) | 1177, 2091 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 404, 1231, 1240, 1679 |
| BstNI | CCWGG | 3 cut(s) | 550, 728, 2030 |
| BstSCI | CCNGG | 5 cut(s) | 548, 661, 726, 1732, 2028 |
| BstSFI | CTRYAG | 2 cut(s) | 339, 1834 |
| BstV1I | GCAGC | 4 cut(s) | 68, 557, 1565, 1669 |
| BstV2I | GAAGAC | 1 cut(s) | 546 |
| BstX2I | RGATCY | 2 cut(s) | 1618, 1965 |
| BstYI | RGATCY | 2 cut(s) | 1618, 1965 |
| Bsu15I | ATCGAT | 1 cut(s) | 1599 |
| Bsu36I | CCTNAGG | 2 cut(s) | 1031, 1170 |
| BsuI | GTATCC | 2 cut(s) | 2044, 2089 |
| BsuRI | GGCC | 7 cut(s) | 266, 390, 751, 907, 946, 1168, 1749 |
| BsuTUI | ATCGAT | 1 cut(s) | 1599 |
| BtgI | CCRYGG | 1 cut(s) | 6 |
| BtsCI | GGATG | 8 cut(s) | 52, 458, 836, 1048, 1056, 1418, 1541, 1742 |
| BtsI | GCAGTG | 1 cut(s) | 393 |
| BtsIMutI | CAGTG | 3 cut(s) | 393, 409, 1933 |
| Cac8I | GCNNGC | 3 cut(s) | 856, 1452, 1470 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1622 |
| CfoI | GCGC | 1 cut(s) | 112 |
| Cfr13I | GGNCC | 8 cut(s) | 830, 905, 945, 1153, 1276, 1513, 1748, 1809 |
| ClaI | ATCGAT | 1 cut(s) | 1599 |
| CsiI | ACCWGGT | 1 cut(s) | 2028 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1113, 1148 |
| CviAII | CATG | 5 cut(s) | 7, 568, 575, 890, 1221 |
| DdeI | CTNAG | 4 cut(s) | 913, 1031, 1170, 1674 |
| DinI | GGCGCC | 1 cut(s) | 111 |
| EaeI | YGGCCR | 2 cut(s) | 264, 388 |
| Eam1104I | CTCTTC | 2 cut(s) | 811, 817 |
| EarI | CTCTTC | 2 cut(s) | 811, 817 |
| Eco130I | CCWWGG | 3 cut(s) | 6, 1495, 2037 |
| Eco47I | GGWCC | 5 cut(s) | 830, 1153, 1276, 1513, 1809 |
| Eco57I | CTGAAG | 1 cut(s) | 2111 |
| Eco81I | CCTNAGG | 2 cut(s) | 1031, 1170 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1276 |
| EcoRI | GAATTC | 1 cut(s) | 917 |
| EcoRII | CCWGG | 3 cut(s) | 548, 726, 2028 |
| EcoT14I | CCWWGG | 3 cut(s) | 6, 1495, 2037 |
| EgeI | GGCGCC | 1 cut(s) | 111 |
| EheI | GGCGCC | 1 cut(s) | 111 |
| ErhI | CCWWGG | 3 cut(s) | 6, 1495, 2037 |
| FaeI | CATG | 5 cut(s) | 10, 571, 578, 893, 1224 |
| FalI | AAGNNNNNCTT | 3 cut(s) | 1629, 1661, 2111 |
| FaqI | GGGAC | 3 cut(s) | 843, 1289, 1822 |
| FatI | CATG | 5 cut(s) | 6, 567, 574, 889, 1220 |
| FauI | CCCGC | 1 cut(s) | 310 |
| FbaI | TGATCA | 3 cut(s) | 169, 211, 1285 |
| Fnu4HI | GCNGC | 7 cut(s) | 82, 388, 546, 701, 944, 1554, 1683 |
| FokI | GGATG | 8 cut(s) | 39, 445, 823, 1055, 1063, 1405, 1528, 1749 |
| Fsp4HI | GCNGC | 7 cut(s) | 82, 388, 546, 701, 944, 1554, 1683 |
| FspBI | CTAG | 5 cut(s) | 242, 1226, 1787, 1877, 1899 |
| GlaI | GCGC | 1 cut(s) | 111 |
| GluI | GCNGC | 7 cut(s) | 82, 388, 546, 701, 944, 1554, 1683 |
| GsaI | CCCAGC | 1 cut(s) | 906 |
| GsuI | CTGGAG | 2 cut(s) | 1115, 1201 |
| HaeII | RGCGCY | 1 cut(s) | 113 |
| HaeIII | GGCC | 7 cut(s) | 266, 390, 751, 907, 946, 1168, 1749 |
| HapII | CCGG | 4 cut(s) | 113, 462, 663, 1733 |
| HhaI | GCGC | 1 cut(s) | 112 |
| Hin1I | GRCGYC | 2 cut(s) | 110, 411 |
| Hin1II | CATG | 5 cut(s) | 10, 571, 578, 893, 1224 |
| Hin6I | GCGC | 1 cut(s) | 110 |
| HinP1I | GCGC | 1 cut(s) | 110 |
| HincII | GTYRAC | 2 cut(s) | 736, 1177 |
| HindII | GTYRAC | 2 cut(s) | 736, 1177 |
| HindIII | AAGCTT | 2 cut(s) | 417, 1643 |
| HinfI | GANTC | 4 cut(s) | 145, 275, 562, 1604 |
| HpaI | GTTAAC | 1 cut(s) | 736 |
| HpaII | CCGG | 4 cut(s) | 113, 462, 663, 1733 |
| HphI | GGTGA | 1 cut(s) | 1753 |
| Hpy166II | GTNNAC | 3 cut(s) | 736, 1177, 1904 |
| Hpy188III | TCNNGA | 8 cut(s) | 39, 279, 462, 581, 989, 1033, 1274, 1988 |
| Hpy8I | GTNNAC | 3 cut(s) | 736, 1177, 1904 |
| Hpy99I | CGWCG | 5 cut(s) | 122, 505, 511, 514, 1161 |
| HpyAV | CCTTC | 8 cut(s) | 24, 152, 1041, 1361, 1471, 1504, 2086, 2107 |
| HpyCH4III | ACNGT | 8 cut(s) | 68, 290, 1002, 1057, 1258, 1780, 1937, 2101 |
| HpyCH4IV | ACGT | 3 cut(s) | 411, 638, 1906 |
| HpyCH4V | TGCA | 9 cut(s) | 20, 407, 538, 823, 854, 1243, 1697, 1868, 1960 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 404, 1231, 1240, 1679 |
| HpyF3I | CTNAG | 4 cut(s) | 913, 1031, 1170, 1674 |
| HpySE526I | ACGT | 3 cut(s) | 411, 638, 1906 |
| Hsp92I | GRCGYC | 2 cut(s) | 110, 411 |
| Hsp92II | CATG | 5 cut(s) | 10, 571, 578, 893, 1224 |
| HspAI | GCGC | 1 cut(s) | 110 |
| KasI | GGCGCC | 1 cut(s) | 109 |
| KflI | GGGWCCC | 1 cut(s) | 1276 |
| Kpn2I | TCCGGA | 1 cut(s) | 461 |
| Ksp22I | TGATCA | 3 cut(s) | 169, 211, 1285 |
| KspAI | GTTAAC | 1 cut(s) | 736 |
| LmnI | GCTCC | 3 cut(s) | 340, 375, 1322 |
| Lsp1109I | GCAGC | 4 cut(s) | 68, 557, 1565, 1669 |
| LweI | GCATC | 7 cut(s) | 239, 467, 845, 966, 1211, 1226, 1427 |
| MabI | ACCWGGT | 1 cut(s) | 2028 |
| MaeI | CTAG | 5 cut(s) | 242, 1226, 1787, 1877, 1899 |
| MaeII | ACGT | 3 cut(s) | 411, 638, 1906 |
| MaeIII | GTNAC | 1 cut(s) | 519 |
| MfeI | CAATTG | 1 cut(s) | 374 |
| MflI | RGATCY | 2 cut(s) | 1618, 1965 |
| MhlI | GDGCHC | 1 cut(s) | 1305 |
| Mly113I | GGCGCC | 1 cut(s) | 110 |
| MlyI | GAGTC | 1 cut(s) | 556 |
| MmeI | TCCRAC | 2 cut(s) | 1117, 1900 |
| MroI | TCCGGA | 1 cut(s) | 461 |
| MroXI | GAANNNNTTC | 4 cut(s) | 1335, 1788, 1818, 2126 |
| MseI | TTAA | 8 cut(s) | 252, 294, 440, 735, 1460, 1488, 1566, 1775 |
| MslI | CAYNNNNRTG | 2 cut(s) | 891, 894 |
| MspI | CCGG | 4 cut(s) | 113, 462, 663, 1733 |
| MspR9I | CCNGG | 5 cut(s) | 550, 663, 728, 1734, 2030 |
| MunI | CAATTG | 1 cut(s) | 374 |
| MvaI | CCWGG | 3 cut(s) | 550, 728, 2030 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 404, 1231, 1240, 1679 |
| NarI | GGCGCC | 1 cut(s) | 110 |
| NciI | CCSGG | 2 cut(s) | 663, 1734 |
| NcoI | CCATGG | 1 cut(s) | 6 |
| NlaIII | CATG | 5 cut(s) | 10, 571, 578, 893, 1224 |
| NlaIV | GGNNCC | 9 cut(s) | 12, 88, 111, 371, 831, 947, 1277, 1278, 1810 |
| NmeAIII | GCCGAG | 3 cut(s) | 729, 919, 933 |
| NmuCI | GTSAC | 1 cut(s) | 519 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 506, 509, 515 |
| PdmI | GAANNNNTTC | 4 cut(s) | 1335, 1788, 1818, 2126 |
| PfeI | GAWTC | 3 cut(s) | 145, 275, 1604 |
| PflFI | GACNNNGTC | 1 cut(s) | 1382 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 2056 |
| PfoI | TCCNGGA | 1 cut(s) | 1732 |
| PkrI | GCNGC | 7 cut(s) | 83, 389, 547, 702, 945, 1555, 1684 |
| PleI | GAGTC | 1 cut(s) | 556 |
| PluTI | GGCGCC | 1 cut(s) | 113 |
| PpsI | GAGTC | 1 cut(s) | 556 |
| PpuMI | RGGWCCY | 1 cut(s) | 1276 |
| PshBI | ATTAAT | 1 cut(s) | 1460 |
| PsiI | TTATAA | 1 cut(s) | 1538 |
| Psp5II | RGGWCCY | 1 cut(s) | 1276 |
| Psp6I | CCWGG | 3 cut(s) | 548, 726, 2028 |
| PspFI | CCCAGC | 1 cut(s) | 902 |
| PspGI | CCWGG | 3 cut(s) | 548, 726, 2028 |
| PspN4I | GGNNCC | 9 cut(s) | 12, 88, 111, 371, 831, 947, 1277, 1278, 1810 |
| PspPI | GGNCC | 8 cut(s) | 830, 905, 945, 1153, 1276, 1513, 1748, 1809 |
| PspPPI | RGGWCCY | 1 cut(s) | 1276 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1622 |
| PsuI | RGATCY | 2 cut(s) | 1618, 1965 |
| PsyI | GACNNNGTC | 1 cut(s) | 1382 |
| RseI | CAYNNNNRTG | 2 cut(s) | 891, 894 |
| SaqAI | TTAA | 8 cut(s) | 252, 294, 440, 735, 1460, 1488, 1566, 1775 |
| SatI | GCNGC | 7 cut(s) | 82, 388, 546, 701, 944, 1554, 1683 |
| Sau96I | GGNCC | 8 cut(s) | 830, 905, 945, 1153, 1276, 1513, 1748, 1809 |
| SchI | GAGTC | 1 cut(s) | 556 |
| ScrFI | CCNGG | 5 cut(s) | 550, 663, 728, 1734, 2030 |
| SduI | GDGCHC | 1 cut(s) | 1305 |
| SexAI | ACCWGGT | 1 cut(s) | 2028 |
| SfaNI | GCATC | 7 cut(s) | 239, 467, 845, 966, 1211, 1226, 1427 |
| SfcI | CTRYAG | 2 cut(s) | 339, 1834 |
| SfoI | GGCGCC | 1 cut(s) | 111 |
| SinI | GGWCC | 5 cut(s) | 830, 1153, 1276, 1513, 1809 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 891, 894 |
| SpeI | ACTAGT | 1 cut(s) | 1786 |
| SsiI | CCGC | 7 cut(s) | 84, 317, 387, 701, 943, 1448, 2075 |
| SspDI | GGCGCC | 1 cut(s) | 109 |
| SspMI | CTAG | 5 cut(s) | 242, 1226, 1787, 1877, 1899 |
| StyD4I | CCNGG | 5 cut(s) | 548, 661, 726, 1732, 2028 |
| StyI | CCWWGG | 3 cut(s) | 6, 1495, 2037 |
| TaaI | ACNGT | 8 cut(s) | 68, 290, 1002, 1057, 1258, 1780, 1937, 2101 |
| TaiI | ACGT | 3 cut(s) | 414, 641, 1909 |
| TaqI | TCGA | 3 cut(s) | 1060, 1159, 1599 |
| TaqII | GACCGA | 1 cut(s) | 1826 |
| TauI | GCSGC | 3 cut(s) | 390, 703, 946 |
| TfiI | GAWTC | 3 cut(s) | 145, 275, 1604 |
| Tru1I | TTAA | 8 cut(s) | 252, 294, 440, 735, 1460, 1488, 1566, 1775 |
| Tru9I | TTAA | 8 cut(s) | 252, 294, 440, 735, 1460, 1488, 1566, 1775 |
| TscAI | CASTG | 3 cut(s) | 400, 409, 1940 |
| TseFI | GTSAC | 1 cut(s) | 519 |
| TseI | GCWGC | 4 cut(s) | 81, 545, 1553, 1682 |
| Tsp45I | GTSAC | 1 cut(s) | 519 |
| TspGWI | ACGGA | 1 cut(s) | 1145 |
| TspRI | CASTG | 3 cut(s) | 400, 409, 1940 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1382 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 2056 |
| VpaK11BI | GGWCC | 5 cut(s) | 830, 1153, 1276, 1513, 1809 |
| VspI | ATTAAT | 1 cut(s) | 1460 |
| XapI | RAATTY | 2 cut(s) | 597, 917 |
| XmnI | GAANNNNTTC | 4 cut(s) | 1335, 1788, 1818, 2126 |
| XspI | CTAG | 5 cut(s) | 242, 1226, 1787, 1877, 1899 |
| ZraI | GACGTC | 1 cut(s) | 412 |