Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0006209

Physical Location & Seq

Genomic Coordinates Reverse (-)

51420195 .. 51429281

Gene Structure 9087 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG292700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGACCATGGTTCCTTCTGCACATCATCAAAACTTATCCAGACAACAACAACATCCTCATCTCTACGGTGGTTATGGTGGCTGCGGTGCCAATTATTACAACAATACGGCGCCGGACGACGAGAGCTTTGGTGGTCATCTTATGAATCAAGTAGATGAAGGTGGTTATGATCAGTATAGTTATTGTAATAACAATAATAATACTATTACTGATCAATCTTACTTATTAGCATCTTCCGATCTAGTAGTGGTTAATGGTCCGATGGCCGAAGATGAATCAAGAACTAACAGTCTTAACAACGAAGCCGAAGCCGAAGCGGGGTCAAGTTCTAAAGCTCCTGTAGATGAAGATCAGAGAGACGAGAGATGGCTCCAATTGAGTATAGGCGGCCACACCGCTACCAGTGCAGACGTCCAAGCTCCGGAAAGAAGAAGCTCGTTAAGGGGTTCATCATCGGCATCCGGATTGATTGAGCTTGATCTGTTATCAGCAAATATATCGTCGCCGTCGTCGTCATCGTCACGGCAATTTCAGTTGCAACAAGCAGCCAGGTCTTCCACGACTCCCATGTTTCATGTTCCCGATCATCATCATCAAATTCGTGTTCCTAATTTCGGCACTAATTTGATGAACACTACGTCTAATTTATATTTTCAACACCCCGGAATGGGAATGAGTAGTTCTTTGCCGCCGAGCTTTCCTCAACACCAGCACCAGGAGGTTAACTGGGGATTTAGGCCATTGATCCCTCATCATAATAATCATATAGGGAATAGTGCTTCAACTTCTACCTCTTCCTCTTCTTTTATGCAACTGGGACCAGCATCCTCCTCCTATTTTGCACGCCCATTTCAACTTCAACATCATCATCTTCATCATGGTGGTGGTGCTGGGCCGAGCTTAGAATTCAGAGTTGTTGATCCTCCTCGGCGGCCCCAGTCTGGCATCTGGTTTATGCTACAAGCCTCACAAAATCAAGAAAAAGAACCGTTCTTGCCCCAGATACCTAAAAGCTACCTCAGGATCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

343

Amino Acids

37.79

Weight (kDa)

6.13

Isoelectric Point (pI)

59.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006209)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28080 AT1G28080 AT5G13250 AT5G13250
fragaria_vesca	FvH4_4g22950 FvH4_4g22950 FvH4_4g22950
malus_domestica	MD13G1127900.v1.1 MD16G1128300.v1.1
prunus_persica	Prupe.1G218100_v2.0.a1
pyrus_communis	pycom13g11080 pycom13g11090 pycom16g10880
rosa_chinensis	RchiOBHm_Chr4g0429231
rosa_laevigata	RLG00000007087
rosa_multiflora	Rmu_co8060918.1_g000001 Rmu_sc0000054.1_g000030 Rmu_sc0005338.1_g000002
rosa_roxburghii	Rroxscaffold_5G00370860
rosa_rugosa	Rorug04G0233800 Rorug04G0233900
rosa_samantha	Rh4AG289900 Rh4BG295700 Rh4CG311300 Rh4DG292700
rosa_wichuraiana	Rw4G025100 Rw5G007270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	414
AccB1I	GGYRCC	2 cut(s)	86, 109
AccIII	TCCGGA	2 cut(s)	421, 461
AciI	CCGC	6 cut(s)	84, 317, 387, 396, 689, 931
AclWI	GGATC	3 cut(s)	739, 914, 1031
AcoI	YGGCCR	2 cut(s)	264, 388
AcsI	RAATTY	2 cut(s)	597, 905
AcyI	GRCGYC	2 cut(s)	110, 411
AfiI	CCNNNNNNNGG	7 cut(s)	318, 421, 614, 667, 668, 715, 941
AgsI	TTSAA	4 cut(s)	656, 783, 854, 860
AjnI	CCWGG	2 cut(s)	548, 714
AluBI	AGCT	8 cut(s)	126, 335, 419, 435, 475, 696, 900, 1014
AluI	AGCT	8 cut(s)	126, 335, 419, 435, 475, 696, 900, 1014
Alw26I	GTCTC	1 cut(s)	351
AlwI	GGATC	3 cut(s)	739, 914, 1031
Aor13HI	TCCGGA	2 cut(s)	421, 461
AoxI	GGCC	5 cut(s)	264, 388, 737, 893, 932
ApeKI	GCWGC	2 cut(s)	81, 545
ApoI	RAATTY	2 cut(s)	597, 905
ArsI	GACNNNNNNTTYG	4 cut(s)	110, 142, 485, 517
AspLEI	GCGC	1 cut(s)	112
AspS9I	GGNCC	4 cut(s)	257, 818, 893, 933
AsuC2I	CCSGG	1 cut(s)	663
AvaII	GGWCC	2 cut(s)	257, 818
AxyI	CCTNAGG	1 cut(s)	1019
BanI	GGYRCC	2 cut(s)	86, 109
BbsI	GAAGAC	1 cut(s)	546
BbvI	GCAGC	2 cut(s)	68, 557
BccI	CCATC	2 cut(s)	256, 360
BceAI	ACGGC	3 cut(s)	123, 490, 539
BcgI	CGANNNNNNTGC	2 cut(s)	480, 514
BciT130I	CCWGG	2 cut(s)	550, 716
BclI	TGATCA	2 cut(s)	169, 211
BcnI	CCSGG	1 cut(s)	663
BcoDI	GTCTC	1 cut(s)	351
BfaI	CTAG	1 cut(s)	242
BfmI	CTRYAG	1 cut(s)	339
BfoI	RGCGCY	1 cut(s)	113
BisI	GCNGC	5 cut(s)	82, 388, 546, 689, 932
BlsI	GCNGC	5 cut(s)	83, 389, 547, 690, 933
Bme1390I	CCNGG	3 cut(s)	550, 663, 716
Bme18I	GGWCC	2 cut(s)	257, 818
BmgT120I	GGNCC	4 cut(s)	257, 818, 893, 933
BmiI	GGNNCC	6 cut(s)	12, 88, 111, 371, 819, 935
BmrFI	CCNGG	3 cut(s)	550, 663, 716
BmrI	ACTGGG	3 cut(s)	736, 824, 931
BmsI	GCATC	4 cut(s)	239, 467, 833, 954
BmuI	ACTGGG	3 cut(s)	736, 824, 931
BpiI	GAAGAC	1 cut(s)	546
BplI	GAGNNNNNCTC	2 cut(s)	685, 717
BpuMI	CCSGG	1 cut(s)	663
BsaBI	GATNNNNATC	2 cut(s)	348, 588
BsaHI	GRCGYC	2 cut(s)	110, 411
BsaJI	CCNNGG	3 cut(s)	6, 661, 926
BsaWI	WCCGGW	2 cut(s)	421, 461
Bsc4I	CCNNNNNNNGG	7 cut(s)	318, 421, 614, 667, 668, 715, 941
Bse1I	ACTGG	4 cut(s)	402, 731, 819, 937
Bse21I	CCTNAGG	1 cut(s)	1019
Bse8I	GATNNNNATC	2 cut(s)	348, 588
BseAI	TCCGGA	2 cut(s)	421, 461
BseBI	CCWGG	2 cut(s)	550, 716
BseDI	CCNNGG	3 cut(s)	6, 661, 926
BseGI	GGATG	3 cut(s)	52, 458, 824
BseJI	GATNNNNATC	2 cut(s)	348, 588
BseLI	CCNNNNNNNGG	7 cut(s)	318, 421, 614, 667, 668, 715, 941
BseNI	ACTGG	4 cut(s)	402, 731, 819, 937
BseRI	GAGGAG	2 cut(s)	820, 915
BseXI	GCAGC	2 cut(s)	68, 557
BseYI	CCCAGC	1 cut(s)	890
BsgI	GTGCAG	1 cut(s)	426
BshFI	GGCC	5 cut(s)	266, 390, 739, 895, 934
BshNI	GGYRCC	2 cut(s)	86, 109
BsiSI	CCGG	4 cut(s)	113, 422, 462, 663
BslFI	GGGAC	1 cut(s)	831
BslI	CCNNNNNNNGG	7 cut(s)	318, 421, 614, 667, 668, 715, 941
BsmAI	GTCTC	1 cut(s)	351
BsmBI	CGTCTC	1 cut(s)	351
BsmFI	GGGAC	1 cut(s)	831
BsnI	GGCC	5 cut(s)	266, 390, 739, 895, 934
Bsp13I	TCCGGA	2 cut(s)	421, 461
Bsp143I	GATC	9 cut(s)	169, 211, 238, 349, 478, 583, 744, 919, 1023
Bsp19I	CCATGG	1 cut(s)	6
BspACI	CCGC	6 cut(s)	84, 317, 387, 396, 689, 931
BspANI	GGCC	5 cut(s)	266, 390, 739, 895, 934
BspCNI	CTCAG	1 cut(s)	1032
BspEI	TCCGGA	2 cut(s)	421, 461
BspLI	GGNNCC	6 cut(s)	12, 88, 111, 371, 819, 935
BspPI	GGATC	3 cut(s)	739, 914, 1031
BspT107I	GGYRCC	2 cut(s)	86, 109
BsrI	ACTGG	4 cut(s)	402, 731, 819, 937
BssECI	CCNNGG	3 cut(s)	6, 661, 926
BssMI	GATC	9 cut(s)	169, 211, 238, 349, 478, 583, 744, 919, 1023
BssNI	GRCGYC	2 cut(s)	110, 411
BssT1I	CCWWGG	1 cut(s)	6
Bst2UI	CCWGG	2 cut(s)	550, 716
Bst4CI	ACNGT	3 cut(s)	68, 290, 990
Bst6I	CTCTTC	2 cut(s)	799, 805
BstACI	GRCGYC	2 cut(s)	110, 411
BstC8I	GCNNGC	1 cut(s)	844
BstDEI	CTNAG	2 cut(s)	901, 1019
BstDSI	CCRYGG	1 cut(s)	6
BstF5I	GGATG	3 cut(s)	52, 458, 824
BstH2I	RGCGCY	1 cut(s)	113
BstHHI	GCGC	1 cut(s)	112
BstKTI	GATC	9 cut(s)	172, 214, 241, 352, 481, 586, 747, 922, 1026
BstMAI	GTCTC	1 cut(s)	351
BstMBI	GATC	9 cut(s)	169, 211, 238, 349, 478, 583, 744, 919, 1023
BstMWI	GCNNNNNNNGC	1 cut(s)	404
BstNI	CCWGG	2 cut(s)	550, 716
BstSCI	CCNGG	3 cut(s)	548, 661, 714
BstSFI	CTRYAG	1 cut(s)	339
BstV1I	GCAGC	2 cut(s)	68, 557
BstV2I	GAAGAC	1 cut(s)	546
Bsu36I	CCTNAGG	1 cut(s)	1019
BsuRI	GGCC	5 cut(s)	266, 390, 739, 895, 934
BtgI	CCRYGG	1 cut(s)	6
BtsCI	GGATG	3 cut(s)	52, 458, 824
BtsIMutI	CAGTG	1 cut(s)	409
Cac8I	GCNNGC	1 cut(s)	844
CfoI	GCGC	1 cut(s)	112
Cfr13I	GGNCC	4 cut(s)	257, 818, 893, 933
CviAII	CATG	4 cut(s)	7, 568, 575, 878
DdeI	CTNAG	2 cut(s)	901, 1019
DinI	GGCGCC	1 cut(s)	111
DpnI	GATC	9 cut(s)	171, 213, 240, 351, 480, 585, 746, 921, 1025
DpnII	GATC	9 cut(s)	169, 211, 238, 349, 478, 583, 744, 919, 1023
EaeI	YGGCCR	2 cut(s)	264, 388
Eam1104I	CTCTTC	2 cut(s)	799, 805
EarI	CTCTTC	2 cut(s)	799, 805
Eco130I	CCWWGG	1 cut(s)	6
Eco47I	GGWCC	2 cut(s)	257, 818
Eco81I	CCTNAGG	1 cut(s)	1019
EcoRI	GAATTC	1 cut(s)	905
EcoRII	CCWGG	2 cut(s)	548, 714
EcoT14I	CCWWGG	1 cut(s)	6
EgeI	GGCGCC	1 cut(s)	111
EheI	GGCGCC	1 cut(s)	111
ErhI	CCWWGG	1 cut(s)	6
Esp3I	CGTCTC	1 cut(s)	351
FaeI	CATG	4 cut(s)	10, 571, 578, 881
FaqI	GGGAC	1 cut(s)	831
FatI	CATG	4 cut(s)	6, 567, 574, 877
FauI	CCCGC	1 cut(s)	310
FbaI	TGATCA	2 cut(s)	169, 211
Fnu4HI	GCNGC	5 cut(s)	82, 388, 546, 689, 932
FokI	GGATG	3 cut(s)	39, 445, 811
Fsp4HI	GCNGC	5 cut(s)	82, 388, 546, 689, 932
FspBI	CTAG	1 cut(s)	242
GlaI	GCGC	1 cut(s)	111
GluI	GCNGC	5 cut(s)	82, 388, 546, 689, 932
GsaI	CCCAGC	1 cut(s)	894
HaeII	RGCGCY	1 cut(s)	113
HaeIII	GGCC	5 cut(s)	266, 390, 739, 895, 934
HapII	CCGG	4 cut(s)	113, 422, 462, 663
HhaI	GCGC	1 cut(s)	112
Hin1I	GRCGYC	2 cut(s)	110, 411
Hin1II	CATG	4 cut(s)	10, 571, 578, 881
Hin6I	GCGC	1 cut(s)	110
HinP1I	GCGC	1 cut(s)	110
HincII	GTYRAC	1 cut(s)	724
HindII	GTYRAC	1 cut(s)	724
HinfI	GANTC	3 cut(s)	145, 275, 562
HpaI	GTTAAC	1 cut(s)	724
HpaII	CCGG	4 cut(s)	113, 422, 462, 663
Hpy166II	GTNNAC	1 cut(s)	724
Hpy188I	TCNGA	4 cut(s)	238, 261, 354, 911
Hpy188III	TCNNGA	7 cut(s)	39, 279, 422, 462, 581, 977, 1021
Hpy8I	GTNNAC	1 cut(s)	724
Hpy99I	CGWCG	4 cut(s)	122, 505, 511, 514
HpyAV	CCTTC	2 cut(s)	24, 152
HpyCH4III	ACNGT	3 cut(s)	68, 290, 990
HpyCH4IV	ACGT	2 cut(s)	411, 638
HpyCH4V	TGCA	5 cut(s)	20, 407, 538, 811, 842
HpyF10VI	GCNNNNNNNGC	1 cut(s)	404
HpyF3I	CTNAG	2 cut(s)	901, 1019
HpySE526I	ACGT	2 cut(s)	411, 638
Hsp92I	GRCGYC	2 cut(s)	110, 411
Hsp92II	CATG	4 cut(s)	10, 571, 578, 881
HspAI	GCGC	1 cut(s)	110
KasI	GGCGCC	1 cut(s)	109
Kpn2I	TCCGGA	2 cut(s)	421, 461
Ksp22I	TGATCA	2 cut(s)	169, 211
KspAI	GTTAAC	1 cut(s)	724
Kzo9I	GATC	9 cut(s)	169, 211, 238, 349, 478, 583, 744, 919, 1023
LmnI	GCTCC	3 cut(s)	340, 375, 424
Lsp1109I	GCAGC	2 cut(s)	68, 557
LweI	GCATC	4 cut(s)	239, 467, 833, 954
MaeI	CTAG	1 cut(s)	242
MaeII	ACGT	2 cut(s)	411, 638
MaeIII	GTNAC	1 cut(s)	519
MalI	GATC	9 cut(s)	171, 213, 240, 351, 480, 585, 746, 921, 1025
MboI	GATC	9 cut(s)	169, 211, 238, 349, 478, 583, 744, 919, 1023
MboII	GAAGA	8 cut(s)	225, 281, 359, 441, 546, 786, 792, 863
MfeI	CAATTG	1 cut(s)	374
MluCI	AATT	8 cut(s)	91, 374, 527, 597, 610, 622, 643, 905
Mly113I	GGCGCC	1 cut(s)	110
MlyI	GAGTC	1 cut(s)	556
MroI	TCCGGA	2 cut(s)	421, 461
MseI	TTAA	4 cut(s)	252, 294, 440, 723
MslI	CAYNNNNRTG	2 cut(s)	879, 882
MspI	CCGG	4 cut(s)	113, 422, 462, 663
MspR9I	CCNGG	3 cut(s)	550, 663, 716
MunI	CAATTG	1 cut(s)	374
MvaI	CCWGG	2 cut(s)	550, 716
MwoI	GCNNNNNNNGC	1 cut(s)	404
NarI	GGCGCC	1 cut(s)	110
NciI	CCSGG	1 cut(s)	663
NcoI	CCATGG	1 cut(s)	6
NdeII	GATC	9 cut(s)	169, 211, 238, 349, 478, 583, 744, 919, 1023
NlaIII	CATG	4 cut(s)	10, 571, 578, 881
NlaIV	GGNNCC	6 cut(s)	12, 88, 111, 371, 819, 935
NmeAIII	GCCGAG	3 cut(s)	717, 907, 921
NmuCI	GTSAC	1 cut(s)	519
PcsI	WCGNNNNNNNCGW	3 cut(s)	506, 509, 515
PfeI	GAWTC	2 cut(s)	145, 275
PkrI	GCNGC	5 cut(s)	83, 389, 547, 690, 933
PleI	GAGTC	1 cut(s)	556
PluTI	GGCGCC	1 cut(s)	113
PpsI	GAGTC	1 cut(s)	556
Psp6I	CCWGG	2 cut(s)	548, 714
PspFI	CCCAGC	1 cut(s)	890
PspGI	CCWGG	2 cut(s)	548, 714
PspN4I	GGNNCC	6 cut(s)	12, 88, 111, 371, 819, 935
PspPI	GGNCC	4 cut(s)	257, 818, 893, 933
RseI	CAYNNNNRTG	2 cut(s)	879, 882
SaqAI	TTAA	4 cut(s)	252, 294, 440, 723
SatI	GCNGC	5 cut(s)	82, 388, 546, 689, 932
Sau3AI	GATC	9 cut(s)	169, 211, 238, 349, 478, 583, 744, 919, 1023
Sau96I	GGNCC	4 cut(s)	257, 818, 893, 933
SchI	GAGTC	1 cut(s)	556
ScrFI	CCNGG	3 cut(s)	550, 663, 716
SfaNI	GCATC	4 cut(s)	239, 467, 833, 954
SfcI	CTRYAG	1 cut(s)	339
SfoI	GGCGCC	1 cut(s)	111
SinI	GGWCC	2 cut(s)	257, 818
SmiMI	CAYNNNNRTG	2 cut(s)	879, 882
Sse9I	AATT	8 cut(s)	91, 374, 527, 597, 610, 622, 643, 905
SsiI	CCGC	6 cut(s)	84, 317, 387, 396, 689, 931
SspDI	GGCGCC	1 cut(s)	109
SspMI	CTAG	1 cut(s)	242
StyD4I	CCNGG	3 cut(s)	548, 661, 714
StyI	CCWWGG	1 cut(s)	6
TaaI	ACNGT	3 cut(s)	68, 290, 990
TaiI	ACGT	2 cut(s)	414, 641
TasI	AATT	8 cut(s)	91, 374, 527, 597, 610, 622, 643, 905
TauI	GCSGC	3 cut(s)	390, 691, 934
TfiI	GAWTC	2 cut(s)	145, 275
Tru1I	TTAA	4 cut(s)	252, 294, 440, 723
Tru9I	TTAA	4 cut(s)	252, 294, 440, 723
TscAI	CASTG	1 cut(s)	409
TseFI	GTSAC	1 cut(s)	519
TseI	GCWGC	2 cut(s)	81, 545
Tsp45I	GTSAC	1 cut(s)	519
TspDTI	ATGAA	8 cut(s)	158, 171, 288, 360, 438, 563, 644, 863
TspRI	CASTG	1 cut(s)	409
VpaK11BI	GGWCC	2 cut(s)	257, 818
XapI	RAATTY	2 cut(s)	597, 905
XspI	CTAG	1 cut(s)	242
ZraI	GACGTC	1 cut(s)	412

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.