Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0006209

Physical Location & Seq

Genomic Coordinates Forward (+)

7577381 .. 7577857

Gene Structure 477 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g11080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGACCATGGTTCCTCCTGCTGCTCATCATCAAGACATACCCAACCAACAACAACAACAACACAATCTCTACGGCGGTTATGGTGGTTGCGGTTCCAATTACACGGCGGAGATCAGCAATTTCGGTCTTATGAGTACTAGTCAAGTTGTAGAAGGTTATGAGTATAACAATTATTGCAATAATATTGTTATTGAATCTGATCATCATCATCATCATCATCATCATCATCAGCTAGCGGGAATTGATTCAATGGCCGAGGATGAGTCTAGAACTAACAGCGTAAACGAAGCGGGTTCGAGTTCTAAAGATGCTCCGGAAGATAACAAAACATGGCTCCAATTGACTATAGGCGGCGGCTCTAACAACCACCCACCTGCGACTACGGAACATCCAACCCTCAGAAGCTCACGAAGTAGTACTACTCCTTCCGGTCCCGGATTGGTTGAACTTGATCGATCGATTACCACCAGGCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

159

Amino Acids

17.26

Weight (kDa)

5.68

Isoelectric Point (pI)

61.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006209)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28080 AT1G28080 AT5G13250 AT5G13250
fragaria_vesca	FvH4_4g22950 FvH4_4g22950 FvH4_4g22950
malus_domestica	MD13G1127900.v1.1 MD16G1128300.v1.1
prunus_persica	Prupe.1G218100_v2.0.a1
pyrus_communis	pycom13g11080 pycom13g11090 pycom16g10880
rosa_chinensis	RchiOBHm_Chr4g0429231
rosa_laevigata	RLG00000007087
rosa_multiflora	Rmu_co8060918.1_g000001 Rmu_sc0000054.1_g000030 Rmu_sc0005338.1_g000002
rosa_roxburghii	Rroxscaffold_5G00370860
rosa_rugosa	Rorug04G0233800 Rorug04G0233900
rosa_samantha	Rh4AG289900 Rh4BG295700 Rh4CG311300 Rh4DG292700
rosa_wichuraiana	Rw4G025100 Rw5G007270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	382
Acc36I	ACCTGC	1 cut(s)	382
AccIII	TCCGGA	1 cut(s)	313
AciI	CCGC	7 cut(s)	75, 90, 107, 236, 290, 351, 354
AcoI	YGGCCR	1 cut(s)	252
AfaI	GTAC	2 cut(s)	136, 418
AgsI	TTSAA	3 cut(s)	194, 249, 446
AhlI	ACTAGT	1 cut(s)	137
AjnI	CCWGG	1 cut(s)	467
AluBI	AGCT	2 cut(s)	232, 405
AluI	AGCT	2 cut(s)	232, 405
Aor13HI	TCCGGA	1 cut(s)	313
AoxI	GGCC	2 cut(s)	252, 470
ApeKI	GCWGC	1 cut(s)	20
Asp700I	GAANNNNTTC	1 cut(s)	244
AspS9I	GGNCC	1 cut(s)	431
AsuC2I	CCSGG	1 cut(s)	435
AsuNHI	GCTAGC	1 cut(s)	232
AvaII	GGWCC	1 cut(s)	431
BarI	GAAGNNNNNNTAC	4 cut(s)	403, 409, 435, 441
BbvI	GCAGC	1 cut(s)	7
BceAI	ACGGC	2 cut(s)	88, 120
BciT130I	CCWGG	1 cut(s)	469
BclI	TGATCA	1 cut(s)	199
BcnI	CCSGG	1 cut(s)	435
BcuI	ACTAGT	1 cut(s)	137
BfaI	CTAG	3 cut(s)	138, 233, 267
BfmI	CTRYAG	1 cut(s)	345
BfuAI	ACCTGC	1 cut(s)	382
BisI	GCNGC	3 cut(s)	21, 352, 355
BlsI	GCNGC	3 cut(s)	22, 353, 356
BmcAI	AGTACT	2 cut(s)	136, 418
Bme1390I	CCNGG	2 cut(s)	435, 469
Bme18I	GGWCC	1 cut(s)	431
BmgT120I	GGNCC	1 cut(s)	431
BmiI	GGNNCC	4 cut(s)	12, 94, 335, 433
BmrFI	CCNGG	2 cut(s)	435, 469
BmsI	GCATC	1 cut(s)	298
BmtI	GCTAGC	1 cut(s)	236
BpuMI	CCSGG	1 cut(s)	435
Bsa29I	ATCGAT	2 cut(s)	454, 458
BsaBI	GATNNNNATC	1 cut(s)	204
BsaJI	CCNNGG	2 cut(s)	6, 255
BsaWI	WCCGGW	2 cut(s)	313, 428
Bse8I	GATNNNNATC	1 cut(s)	204
BseAI	TCCGGA	1 cut(s)	313
BseBI	CCWGG	1 cut(s)	469
BseCI	ATCGAT	2 cut(s)	454, 458
BseDI	CCNNGG	2 cut(s)	6, 255
BseGI	GGATG	2 cut(s)	265, 388
BseJI	GATNNNNATC	1 cut(s)	204
BseMII	CTCAG	1 cut(s)	412
BseXI	GCAGC	1 cut(s)	7
Bsh1285I	CGRYCG	1 cut(s)	458
BshFI	GGCC	2 cut(s)	254, 472
BshVI	ATCGAT	2 cut(s)	454, 458
BsiEI	CGRYCG	1 cut(s)	458
BsiSI	CCGG	3 cut(s)	314, 429, 435
BslFI	GGGAC	1 cut(s)	417
BsmFI	GGGAC	1 cut(s)	417
BsnI	GGCC	2 cut(s)	254, 472
Bsp13I	TCCGGA	1 cut(s)	313
Bsp143I	GATC	4 cut(s)	111, 199, 451, 455
Bsp19I	CCATGG	1 cut(s)	6
BspACI	CCGC	7 cut(s)	75, 90, 107, 236, 290, 351, 354
BspANI	GGCC	2 cut(s)	254, 472
BspCNI	CTCAG	1 cut(s)	411
BspDI	ATCGAT	2 cut(s)	454, 458
BspEI	TCCGGA	1 cut(s)	313
BspLI	GGNNCC	4 cut(s)	12, 94, 335, 433
BspMI	ACCTGC	1 cut(s)	382
BspOI	GCTAGC	1 cut(s)	236
BssECI	CCNNGG	2 cut(s)	6, 255
BssMI	GATC	4 cut(s)	111, 199, 451, 455
BssT1I	CCWWGG	1 cut(s)	6
Bst2UI	CCWGG	1 cut(s)	469
BstC8I	GCNNGC	1 cut(s)	234
BstDEI	CTNAG	1 cut(s)	398
BstDSI	CCRYGG	1 cut(s)	6
BstF5I	GGATG	2 cut(s)	265, 388
BstKTI	GATC	4 cut(s)	114, 202, 454, 458
BstMBI	GATC	4 cut(s)	111, 199, 451, 455
BstMCI	CGRYCG	1 cut(s)	458
BstNI	CCWGG	1 cut(s)	469
BstSCI	CCNGG	2 cut(s)	433, 467
BstSFI	CTRYAG	1 cut(s)	345
BstV1I	GCAGC	1 cut(s)	7
Bsu15I	ATCGAT	2 cut(s)	454, 458
BsuRI	GGCC	2 cut(s)	254, 472
BsuTUI	ATCGAT	2 cut(s)	454, 458
BtgI	CCRYGG	1 cut(s)	6
BtsCI	GGATG	2 cut(s)	265, 388
BveI	ACCTGC	1 cut(s)	382
Cac8I	GCNNGC	1 cut(s)	234
Cfr13I	GGNCC	1 cut(s)	431
ClaI	ATCGAT	2 cut(s)	454, 458
Csp6I	GTAC	2 cut(s)	135, 417
CviAII	CATG	3 cut(s)	7, 330, 474
CviJI	RGCY	6 cut(s)	232, 254, 334, 357, 405, 472
CviKI_1	RGCY	6 cut(s)	232, 254, 334, 357, 405, 472
CviQI	GTAC	2 cut(s)	135, 417
DdeI	CTNAG	1 cut(s)	398
DpnI	GATC	4 cut(s)	113, 201, 453, 457
DpnII	GATC	4 cut(s)	111, 199, 451, 455
EaeI	YGGCCR	1 cut(s)	252
EciI	GGCGGA	1 cut(s)	122
Eco130I	CCWWGG	1 cut(s)	6
Eco47I	GGWCC	1 cut(s)	431
EcoRII	CCWGG	1 cut(s)	467
EcoT14I	CCWWGG	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	6
FaeI	CATG	3 cut(s)	10, 333, 477
FaiI	YATR	9 cut(s)	8, 38, 81, 131, 159, 165, 331, 347, 475
FaqI	GGGAC	1 cut(s)	417
FatI	CATG	3 cut(s)	6, 329, 473
FauI	CCCGC	2 cut(s)	229, 283
FbaI	TGATCA	1 cut(s)	199
Fnu4HI	GCNGC	3 cut(s)	21, 352, 355
FokI	GGATG	2 cut(s)	272, 375
Fsp4HI	GCNGC	3 cut(s)	21, 352, 355
FspBI	CTAG	3 cut(s)	138, 233, 267
GluI	GCNGC	3 cut(s)	21, 352, 355
HaeIII	GGCC	2 cut(s)	254, 472
HapII	CCGG	3 cut(s)	314, 429, 435
Hin1II	CATG	3 cut(s)	10, 333, 477
HinfI	GANTC	3 cut(s)	194, 245, 263
HpaII	CCGG	3 cut(s)	314, 429, 435
Hpy166II	GTNNAC	1 cut(s)	283
Hpy188I	TCNGA	2 cut(s)	199, 401
Hpy188III	TCNNGA	4 cut(s)	32, 267, 314, 408
Hpy8I	GTNNAC	1 cut(s)	283
HpyAV	CCTTC	2 cut(s)	146, 435
HpyCH4V	TGCA	1 cut(s)	177
HpyF3I	CTNAG	1 cut(s)	398
Hsp92II	CATG	3 cut(s)	10, 333, 477
Kpn2I	TCCGGA	1 cut(s)	313
Ksp22I	TGATCA	1 cut(s)	199
Kzo9I	GATC	4 cut(s)	111, 199, 451, 455
LmnI	GCTCC	2 cut(s)	316, 339
LpnPI	CCDG	6 cut(s)	30, 327, 387, 442, 448, 454
Lsp1109I	GCAGC	1 cut(s)	7
LweI	GCATC	1 cut(s)	298
MaeI	CTAG	3 cut(s)	138, 233, 267
MalI	GATC	4 cut(s)	113, 201, 453, 457
MboI	GATC	4 cut(s)	111, 199, 451, 455
MboII	GAAGA	1 cut(s)	329
MfeI	CAATTG	1 cut(s)	338
MluCI	AATT	5 cut(s)	97, 118, 169, 240, 338
MlyI	GAGTC	1 cut(s)	272
MmeI	TCCRAC	1 cut(s)	416
MnlI	CCTC	3 cut(s)	24, 250, 407
MroI	TCCGGA	1 cut(s)	313
MroXI	GAANNNNTTC	1 cut(s)	244
MspI	CCGG	3 cut(s)	314, 429, 435
MspR9I	CCNGG	2 cut(s)	435, 469
MunI	CAATTG	1 cut(s)	338
MvaI	CCWGG	1 cut(s)	469
NciI	CCSGG	1 cut(s)	435
NcoI	CCATGG	1 cut(s)	6
NdeII	GATC	4 cut(s)	111, 199, 451, 455
NheI	GCTAGC	1 cut(s)	232
NlaIII	CATG	3 cut(s)	10, 333, 477
NlaIV	GGNNCC	4 cut(s)	12, 94, 335, 433
NmeAIII	GCCGAG	1 cut(s)	280
PaqCI	CACCTGC	1 cut(s)	382
PdmI	GAANNNNTTC	1 cut(s)	244
PfeI	GAWTC	2 cut(s)	194, 245
PfoI	TCCNGGA	1 cut(s)	433
PkrI	GCNGC	3 cut(s)	22, 353, 356
Ple19I	CGATCG	1 cut(s)	458
PleI	GAGTC	1 cut(s)	271
PpsI	GAGTC	1 cut(s)	271
Psp6I	CCWGG	1 cut(s)	467
PspGI	CCWGG	1 cut(s)	467
PspN4I	GGNNCC	4 cut(s)	12, 94, 335, 433
PspPI	GGNCC	1 cut(s)	431
PvuI	CGATCG	1 cut(s)	458
RsaI	GTAC	2 cut(s)	136, 418
RsaNI	GTAC	2 cut(s)	135, 417
SatI	GCNGC	3 cut(s)	21, 352, 355
Sau3AI	GATC	4 cut(s)	111, 199, 451, 455
Sau96I	GGNCC	1 cut(s)	431
ScaI	AGTACT	2 cut(s)	136, 418
SchI	GAGTC	1 cut(s)	272
ScrFI	CCNGG	2 cut(s)	435, 469
SetI	ASST	4 cut(s)	157, 234, 376, 407
SfaNI	GCATC	1 cut(s)	298
SfcI	CTRYAG	1 cut(s)	345
SinI	GGWCC	1 cut(s)	431
SpeI	ACTAGT	1 cut(s)	137
Sse9I	AATT	5 cut(s)	97, 118, 169, 240, 338
SsiI	CCGC	7 cut(s)	75, 90, 107, 236, 290, 351, 354
SspI	AATATT	1 cut(s)	184
SspMI	CTAG	3 cut(s)	138, 233, 267
StyD4I	CCNGG	2 cut(s)	433, 467
StyI	CCWWGG	1 cut(s)	6
TaqI	TCGA	3 cut(s)	296, 454, 458
TaqII	GACCGA	1 cut(s)	113
TasI	AATT	5 cut(s)	97, 118, 169, 240, 338
TatI	WGTACW	2 cut(s)	134, 416
TauI	GCSGC	2 cut(s)	354, 357
TfiI	GAWTC	2 cut(s)	194, 245
TseI	GCWGC	1 cut(s)	20
TspGWI	ACGGA	1 cut(s)	398
VpaK11BI	GGWCC	1 cut(s)	431
XbaI	TCTAGA	1 cut(s)	266
XmnI	GAANNNNTTC	1 cut(s)	244
XspI	CTAG	3 cut(s)	138, 233, 267
ZrmI	AGTACT	2 cut(s)	136, 418

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.