Rorug04G0233900

histone H2A-K119 monoubiquitination

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0006209
Physical Location & Seq
Reverse (-)
39896368 .. 39896544
177 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0233900.1

Sequence Viewer

Length: 177 bp
ATGGAGCGGTCGTCGTCTCCGCCGAGCTCCTCAACCACCCGGTGTTTGTCGAGCTCCTTAACAAGCCGGCACAGGAGTACGTCTGCGAGTAGCTCGGCGTGCCCCAGATTCTTTGCCACGTGGTGGTGTTCAAGCGCGTCCTCGAGACGCTCCGACTCAGACGCATCGTGCCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

58

Amino Acids

6.21

Weight (kDa)

9.47

Isoelectric Point (pI)

122.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 123
AccBSI CCGCTC 1 cut(s) 7
AccII CGCG 1 cut(s) 137
AciI CCGC 2 cut(s) 7, 20
AcvI CACGTG 1 cut(s) 120
AdeI CACNNNGTG 2 cut(s) 42, 123
AfaI GTAC 1 cut(s) 79
AfiI CCNNNNNNNGG 1 cut(s) 123
AgsI TTSAA 1 cut(s) 132
AluBI AGCT 3 cut(s) 27, 54, 93
AluI AGCT 3 cut(s) 27, 54, 93
Alw21I GWGCWC 2 cut(s) 29, 56
Alw26I GTCTC 2 cut(s) 21, 139
Ama87I CYCGRG 1 cut(s) 142
AspLEI GCGC 1 cut(s) 137
AsuC2I CCSGG 1 cut(s) 40
AvaI CYCGRG 1 cut(s) 142
BaeGI GKGCMC 2 cut(s) 104, 173
BanII GRGCYC 2 cut(s) 29, 56
BbrPI CACGTG 1 cut(s) 120
Bbv12I GWGCWC 2 cut(s) 29, 56
BcnI CCSGG 1 cut(s) 40
BcoDI GTCTC 2 cut(s) 21, 139
Bme1390I CCNGG 1 cut(s) 40
BmeT110I CYCGRG 1 cut(s) 142
BmrFI CCNGG 1 cut(s) 40
BmsI GCATC 1 cut(s) 173
BpuMI CCSGG 1 cut(s) 40
BsaAI YACGTR 1 cut(s) 120
BsaXI ACNNNNNCTCC 1 cut(s) 26
Bsc4I CCNNNNNNNGG 1 cut(s) 123
Bse118I RCCGGY 1 cut(s) 66
BseLI CCNNNNNNNGG 1 cut(s) 123
BseMII CTCAG 1 cut(s) 171
BseRI GAGGAG 1 cut(s) 19
BseSI GKGCMC 2 cut(s) 104, 173
Bsh1236I CGCG 1 cut(s) 137
Bsh1285I CGRYCG 1 cut(s) 11
BsiEI CGRYCG 1 cut(s) 11
BsiHKAI GWGCWC 2 cut(s) 29, 56
BsiHKCI CYCGRG 1 cut(s) 142
BsiSI CCGG 2 cut(s) 40, 67
BslI CCNNNNNNNGG 1 cut(s) 123
BsmAI GTCTC 2 cut(s) 21, 139
BsmBI CGTCTC 2 cut(s) 21, 139
BsoBI CYCGRG 1 cut(s) 142
Bsp1286I GDGCHC 4 cut(s) 29, 56, 104, 173
BspACI CCGC 2 cut(s) 7, 20
BspCNI CTCAG 1 cut(s) 170
BspFNI CGCG 1 cut(s) 137
BsrBI CCGCTC 1 cut(s) 7
BsrFI RCCGGY 1 cut(s) 66
BssAI RCCGGY 1 cut(s) 66
BstBAI YACGTR 1 cut(s) 120
BstC8I GCNNGC 2 cut(s) 68, 100
BstDEI CTNAG 1 cut(s) 157
BstFNI CGCG 1 cut(s) 137
BstHHI GCGC 1 cut(s) 137
BstMAI GTCTC 2 cut(s) 21, 139
BstMCI CGRYCG 1 cut(s) 11
BstMWI GCNNNNNNNGC 1 cut(s) 99
BstSCI CCNGG 1 cut(s) 38
BstSLI GKGCMC 2 cut(s) 104, 173
BstUI CGCG 1 cut(s) 137
Cac8I GCNNGC 2 cut(s) 68, 100
CfoI GCGC 1 cut(s) 137
Cfr10I RCCGGY 1 cut(s) 66
CseI GACGC 3 cut(s) 126, 156, 170
Csp6I GTAC 1 cut(s) 78
CviJI RGCY 4 cut(s) 27, 54, 66, 93
CviKI_1 RGCY 4 cut(s) 27, 54, 66, 93
CviQI GTAC 1 cut(s) 78
DdeI CTNAG 1 cut(s) 157
DraIII CACNNNGTG 2 cut(s) 42, 123
EciI GGCGGA 1 cut(s) 9
Ecl136II GAGCTC 2 cut(s) 27, 54
Eco24I GRGCYC 2 cut(s) 29, 56
Eco53kI GAGCTC 2 cut(s) 27, 54
Eco72I CACGTG 1 cut(s) 120
Eco88I CYCGRG 1 cut(s) 142
EcoICRI GAGCTC 2 cut(s) 27, 54
EcoT38I GRGCYC 2 cut(s) 29, 56
Esp3I CGTCTC 2 cut(s) 21, 139
FriOI GRGCYC 2 cut(s) 29, 56
GlaI GCGC 1 cut(s) 136
HapII CCGG 2 cut(s) 40, 67
HgaI GACGC 3 cut(s) 126, 156, 170
HhaI GCGC 1 cut(s) 137
Hin6I GCGC 1 cut(s) 135
HinP1I GCGC 1 cut(s) 135
HinfI GANTC 2 cut(s) 108, 155
HpaII CCGG 2 cut(s) 40, 67
Hpy188I TCNGA 2 cut(s) 154, 160
Hpy188III TCNNGA 1 cut(s) 144
Hpy99I CGWCG 1 cut(s) 16
HpyCH4IV ACGT 2 cut(s) 80, 119
HpyF10VI GCNNNNNNNGC 1 cut(s) 99
HpyF3I CTNAG 1 cut(s) 157
HpySE526I ACGT 2 cut(s) 80, 119
HspAI GCGC 1 cut(s) 135
KroI GCCGGC 1 cut(s) 66
KroNI GCCGGC 1 cut(s) 68
LmnI GCTCC 4 cut(s) 4, 32, 59, 155
LpnPI CCDG 4 cut(s) 53, 58, 80, 118
LweI GCATC 1 cut(s) 173
MaeII ACGT 2 cut(s) 80, 119
MbiI CCGCTC 1 cut(s) 7
MhlI GDGCHC 4 cut(s) 29, 56, 104, 173
MlyI GAGTC 1 cut(s) 149
MmeI TCCRAC 1 cut(s) 177
MnlI CCTC 2 cut(s) 40, 151
MroNI GCCGGC 1 cut(s) 66
MseI TTAA 1 cut(s) 59
MspI CCGG 2 cut(s) 40, 67
MspR9I CCNGG 1 cut(s) 40
MvnI CGCG 1 cut(s) 137
MwoI GCNNNNNNNGC 1 cut(s) 99
NaeI GCCGGC 1 cut(s) 68
NciI CCSGG 1 cut(s) 40
NgoMIV GCCGGC 1 cut(s) 66
NmeAIII GCCGAG 2 cut(s) 48, 74
PaeR7I CTCGAG 1 cut(s) 142
PcsI WCGNNNNNNNCGW 1 cut(s) 20
PdiI GCCGGC 1 cut(s) 68
PfeI GAWTC 1 cut(s) 108
PflMI CCANNNNNTGG 1 cut(s) 123
PleI GAGTC 1 cut(s) 149
PmaCI CACGTG 1 cut(s) 120
PmlI CACGTG 1 cut(s) 120
PpsI GAGTC 1 cut(s) 149
Ppu21I YACGTR 1 cut(s) 120
Psp124BI GAGCTC 2 cut(s) 29, 56
PspCI CACGTG 1 cut(s) 120
RsaI GTAC 1 cut(s) 79
RsaNI GTAC 1 cut(s) 78
SacI GAGCTC 2 cut(s) 29, 56
SaqAI TTAA 1 cut(s) 59
SchI GAGTC 1 cut(s) 149
ScrFI CCNGG 1 cut(s) 40
SduI GDGCHC 4 cut(s) 29, 56, 104, 173
SetI ASST 5 cut(s) 29, 56, 83, 95, 122
SfaNI GCATC 1 cut(s) 173
Sfr274I CTCGAG 1 cut(s) 142
SlaI CTCGAG 1 cut(s) 142
SmlI CTYRAG 1 cut(s) 142
SmoI CTYRAG 1 cut(s) 142
SsiI CCGC 2 cut(s) 7, 20
SstI GAGCTC 2 cut(s) 29, 56
StyD4I CCNGG 1 cut(s) 38
TaiI ACGT 2 cut(s) 83, 122
TaqI TCGA 2 cut(s) 50, 143
TfiI GAWTC 1 cut(s) 108
Tru1I TTAA 1 cut(s) 59
Tru9I TTAA 1 cut(s) 59
Van91I CCANNNNNTGG 1 cut(s) 123
XhoI CTCGAG 1 cut(s) 142
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.