transcription factor
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 981 |
| AciI | CCGC | 1 cut(s) | 981 |
| AclWI | GGATC | 3 cut(s) | 111, 1085, 1098 |
| AcuI | CTGAAG | 2 cut(s) | 92, 1091 |
| AfaI | GTAC | 2 cut(s) | 238, 1166 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 566, 680, 1167 |
| AgsI | TTSAA | 6 cut(s) | 55, 527, 538, 550, 736, 1206 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 615 |
| AjnI | CCWGG | 3 cut(s) | 696, 748, 772 |
| Alw21I | GWGCWC | 5 cut(s) | 198, 655, 903, 1179, 1349 |
| Alw26I | GTCTC | 2 cut(s) | 923, 1222 |
| AlwI | GGATC | 3 cut(s) | 111, 1085, 1098 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 1102, 1235 |
| Ama87I | CYCGRG | 2 cut(s) | 329, 1172 |
| AoxI | GGCC | 5 cut(s) | 131, 671, 743, 784, 969 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 354, 386 |
| AspA2I | CCTAGG | 1 cut(s) | 668 |
| AspS9I | GGNCC | 4 cut(s) | 581, 641, 743, 969 |
| AsuC2I | CCSGG | 1 cut(s) | 1363 |
| AsuHPI | GGTGA | 1 cut(s) | 1421 |
| AsuII | TTCGAA | 1 cut(s) | 1113 |
| AvaI | CYCGRG | 2 cut(s) | 329, 1172 |
| AvaII | GGWCC | 2 cut(s) | 581, 641 |
| AvrII | CCTAGG | 1 cut(s) | 668 |
| BamHI | GGATCC | 1 cut(s) | 1090 |
| BanII | GRGCYC | 3 cut(s) | 198, 903, 1179 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1064, 1096 |
| BauI | CACGAG | 1 cut(s) | 1031 |
| BbsI | GAAGAC | 4 cut(s) | 364, 1205, 1264, 1339 |
| Bbv12I | GWGCWC | 5 cut(s) | 198, 655, 903, 1179, 1349 |
| BccI | CCATC | 2 cut(s) | 467, 1246 |
| BceAI | ACGGC | 1 cut(s) | 495 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1336, 1370 |
| BciT130I | CCWGG | 3 cut(s) | 698, 750, 774 |
| BciVI | GTATCC | 1 cut(s) | 377 |
| BclI | TGATCA | 1 cut(s) | 340 |
| BcnI | CCSGG | 1 cut(s) | 1363 |
| BcoDI | GTCTC | 2 cut(s) | 923, 1222 |
| BfaI | CTAG | 1 cut(s) | 669 |
| BfmI | CTRYAG | 3 cut(s) | 275, 706, 1241 |
| BfuI | GTATCC | 1 cut(s) | 377 |
| BglII | AGATCT | 3 cut(s) | 32, 998, 1076 |
| BlnI | CCTAGG | 1 cut(s) | 668 |
| Bme1390I | CCNGG | 4 cut(s) | 698, 750, 774, 1363 |
| Bme18I | GGWCC | 2 cut(s) | 581, 641 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 615 |
| BmeT110I | CYCGRG | 2 cut(s) | 329, 1172 |
| BmgT120I | GGNCC | 4 cut(s) | 581, 641, 743, 969 |
| BmiI | GGNNCC | 5 cut(s) | 483, 582, 642, 695, 1092 |
| BmrFI | CCNGG | 4 cut(s) | 698, 750, 774, 1363 |
| BmrI | ACTGGG | 1 cut(s) | 555 |
| BmsI | GCATC | 5 cut(s) | 162, 289, 1129, 1141, 1332 |
| BmuI | ACTGGG | 1 cut(s) | 555 |
| BpiI | GAAGAC | 4 cut(s) | 364, 1205, 1264, 1339 |
| BpmI | CTGGAG | 6 cut(s) | 195, 795, 849, 879, 941, 1263 |
| Bpu10I | CCTNAGC | 2 cut(s) | 451, 678 |
| Bpu14I | TTCGAA | 1 cut(s) | 1113 |
| BpuEI | CTTGAG | 2 cut(s) | 173, 1163 |
| BpuMI | CCSGG | 1 cut(s) | 1363 |
| BsaAI | YACGTR | 1 cut(s) | 1040 |
| BsaBI | GATNNNNATC | 1 cut(s) | 345 |
| BsaJI | CCNNGG | 3 cut(s) | 668, 884, 962 |
| BsaWI | WCCGGW | 1 cut(s) | 760 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 566, 680, 1167 |
| Bse1I | ACTGG | 2 cut(s) | 561, 732 |
| Bse8I | GATNNNNATC | 1 cut(s) | 345 |
| BseBI | CCWGG | 3 cut(s) | 698, 750, 774 |
| BseDI | CCNNGG | 3 cut(s) | 668, 884, 962 |
| BseGI | GGATG | 1 cut(s) | 218 |
| BseJI | GATNNNNATC | 1 cut(s) | 345 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 566, 680, 1167 |
| BseMII | CTCAG | 4 cut(s) | 183, 692, 1242, 1260 |
| BseNI | ACTGG | 2 cut(s) | 561, 732 |
| BseRI | GAGGAG | 1 cut(s) | 170 |
| BsgI | GTGCAG | 2 cut(s) | 708, 1088 |
| BshFI | GGCC | 5 cut(s) | 133, 673, 745, 786, 971 |
| BsiHKAI | GWGCWC | 5 cut(s) | 198, 655, 903, 1179, 1349 |
| BsiHKCI | CYCGRG | 2 cut(s) | 329, 1172 |
| BsiSI | CCGG | 2 cut(s) | 761, 1362 |
| BslFI | GGGAC | 1 cut(s) | 543 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 566, 680, 1167 |
| BsmAI | GTCTC | 2 cut(s) | 923, 1222 |
| BsmFI | GGGAC | 1 cut(s) | 543 |
| BsmI | GAATGC | 2 cut(s) | 632, 895 |
| BsnI | GGCC | 5 cut(s) | 133, 673, 745, 786, 971 |
| BsoBI | CYCGRG | 2 cut(s) | 329, 1172 |
| Bsp119I | TTCGAA | 1 cut(s) | 1113 |
| Bsp1286I | GDGCHC | 5 cut(s) | 198, 655, 903, 1179, 1349 |
| Bsp1407I | TGTACA | 1 cut(s) | 1164 |
| Bsp19I | CCATGG | 1 cut(s) | 884 |
| BspACI | CCGC | 1 cut(s) | 981 |
| BspANI | GGCC | 5 cut(s) | 133, 673, 745, 786, 971 |
| BspCNI | CTCAG | 4 cut(s) | 184, 691, 1241, 1261 |
| BspLI | GGNNCC | 5 cut(s) | 483, 582, 642, 695, 1092 |
| BspMAI | CTGCAG | 3 cut(s) | 279, 710, 1245 |
| BspPI | GGATC | 3 cut(s) | 111, 1085, 1098 |
| BspQI | GCTCTTC | 1 cut(s) | 56 |
| BspT104I | TTCGAA | 1 cut(s) | 1113 |
| BsrBI | CCGCTC | 1 cut(s) | 981 |
| BsrGI | TGTACA | 1 cut(s) | 1164 |
| BsrI | ACTGG | 2 cut(s) | 561, 732 |
| BssECI | CCNNGG | 3 cut(s) | 668, 884, 962 |
| BssSI | CACGAG | 1 cut(s) | 1031 |
| BssT1I | CCWWGG | 3 cut(s) | 668, 884, 962 |
| Bst2BI | CACGAG | 1 cut(s) | 1031 |
| Bst2UI | CCWGG | 3 cut(s) | 698, 750, 774 |
| Bst4CI | ACNGT | 4 cut(s) | 74, 797, 916, 1381 |
| Bst6I | CTCTTC | 4 cut(s) | 56, 153, 1067, 1407 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 94 |
| BstAUI | TGTACA | 1 cut(s) | 1164 |
| BstBAI | YACGTR | 1 cut(s) | 1040 |
| BstBI | TTCGAA | 1 cut(s) | 1113 |
| BstC8I | GCNNGC | 5 cut(s) | 95, 336, 358, 675, 1389 |
| BstDEI | CTNAG | 9 cut(s) | 66, 192, 451, 678, 815, 935, 1228, 1269, 1439 |
| BstDSI | CCRYGG | 1 cut(s) | 884 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1165 |
| BstF5I | GGATG | 1 cut(s) | 218 |
| BstMAI | GTCTC | 2 cut(s) | 923, 1222 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 94, 202, 277, 362, 728, 818, 872 |
| BstNI | CCWGG | 3 cut(s) | 698, 750, 774 |
| BstNSI | RCATGY | 1 cut(s) | 97 |
| BstSCI | CCNGG | 4 cut(s) | 696, 748, 772, 1361 |
| BstSFI | CTRYAG | 3 cut(s) | 275, 706, 1241 |
| BstV2I | GAAGAC | 4 cut(s) | 364, 1205, 1264, 1339 |
| BstX2I | RGATCY | 5 cut(s) | 32, 103, 998, 1076, 1090 |
| BstYI | RGATCY | 5 cut(s) | 32, 103, 998, 1076, 1090 |
| BsuI | GTATCC | 1 cut(s) | 377 |
| BsuRI | GGCC | 5 cut(s) | 133, 673, 745, 786, 971 |
| BtgI | CCRYGG | 1 cut(s) | 884 |
| BtsCI | GGATG | 1 cut(s) | 218 |
| BtsIMutI | CAGTG | 2 cut(s) | 725, 1236 |
| Cac8I | GCNNGC | 5 cut(s) | 95, 336, 358, 675, 1389 |
| CaiI | CAGNNNCTG | 2 cut(s) | 1102, 1235 |
| Cfr13I | GGNCC | 4 cut(s) | 581, 641, 743, 969 |
| CseI | GACGC | 1 cut(s) | 758 |
| CsiI | ACCWGGT | 1 cut(s) | 748 |
| Csp6I | GTAC | 2 cut(s) | 237, 1165 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1003, 1038 |
| CviAII | CATG | 5 cut(s) | 94, 413, 885, 1051, 1087 |
| CviQI | GTAC | 2 cut(s) | 237, 1165 |
| DdeI | CTNAG | 9 cut(s) | 66, 192, 451, 678, 815, 935, 1228, 1269, 1439 |
| DriI | GACNNNNNGTC | 1 cut(s) | 615 |
| Eam1104I | CTCTTC | 4 cut(s) | 56, 153, 1067, 1407 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 615 |
| EarI | CTCTTC | 4 cut(s) | 56, 153, 1067, 1407 |
| Ecl136II | GAGCTC | 3 cut(s) | 196, 901, 1177 |
| Eco130I | CCWWGG | 3 cut(s) | 668, 884, 962 |
| Eco147I | AGGCCT | 1 cut(s) | 133 |
| Eco24I | GRGCYC | 3 cut(s) | 198, 903, 1179 |
| Eco47I | GGWCC | 2 cut(s) | 581, 641 |
| Eco53kI | GAGCTC | 3 cut(s) | 196, 901, 1177 |
| Eco57I | CTGAAG | 2 cut(s) | 92, 1091 |
| Eco88I | CYCGRG | 2 cut(s) | 329, 1172 |
| EcoICRI | GAGCTC | 3 cut(s) | 196, 901, 1177 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1165 |
| EcoO109I | RGGNCCY | 2 cut(s) | 581, 969 |
| EcoRII | CCWGG | 3 cut(s) | 696, 748, 772 |
| EcoT14I | CCWWGG | 3 cut(s) | 668, 884, 962 |
| EcoT38I | GRGCYC | 3 cut(s) | 198, 903, 1179 |
| ErhI | CCWWGG | 3 cut(s) | 668, 884, 962 |
| FaeI | CATG | 5 cut(s) | 97, 416, 888, 1054, 1090 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 81, 113 |
| FaqI | GGGAC | 1 cut(s) | 543 |
| FatI | CATG | 5 cut(s) | 93, 412, 884, 1050, 1086 |
| FauI | CCCGC | 1 cut(s) | 974 |
| FbaI | TGATCA | 1 cut(s) | 340 |
| FokI | GGATG | 1 cut(s) | 205 |
| FriOI | GRGCYC | 3 cut(s) | 198, 903, 1179 |
| FspBI | CTAG | 1 cut(s) | 669 |
| GsuI | CTGGAG | 6 cut(s) | 195, 795, 849, 879, 941, 1263 |
| HaeIII | GGCC | 5 cut(s) | 133, 673, 745, 786, 971 |
| HapII | CCGG | 2 cut(s) | 761, 1362 |
| HgaI | GACGC | 1 cut(s) | 758 |
| Hin1II | CATG | 5 cut(s) | 97, 416, 888, 1054, 1090 |
| HincII | GTYRAC | 1 cut(s) | 1189 |
| HindII | GTYRAC | 1 cut(s) | 1189 |
| HindIII | AAGCTT | 1 cut(s) | 1181 |
| HinfI | GANTC | 6 cut(s) | 166, 346, 757, 1034, 1226, 1260 |
| HpaII | CCGG | 2 cut(s) | 761, 1362 |
| HphI | GGTGA | 1 cut(s) | 1421 |
| Hpy166II | GTNNAC | 2 cut(s) | 1043, 1189 |
| Hpy188I | TCNGA | 7 cut(s) | 171, 193, 259, 345, 409, 1374, 1433 |
| Hpy188III | TCNNGA | 8 cut(s) | 152, 179, 350, 607, 851, 896, 920, 1280 |
| Hpy8I | GTNNAC | 2 cut(s) | 1043, 1189 |
| HpyAV | CCTTC | 3 cut(s) | 216, 734, 854 |
| HpyCH4III | ACNGT | 4 cut(s) | 74, 797, 916, 1381 |
| HpyCH4IV | ACGT | 1 cut(s) | 1039 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 94, 202, 277, 362, 728, 818, 872 |
| HpyF3I | CTNAG | 9 cut(s) | 66, 192, 451, 678, 815, 935, 1228, 1269, 1439 |
| HpySE526I | ACGT | 1 cut(s) | 1039 |
| Hsp92II | CATG | 5 cut(s) | 97, 416, 888, 1054, 1090 |
| Ksp22I | TGATCA | 1 cut(s) | 340 |
| LguI | GCTCTTC | 1 cut(s) | 56 |
| LmnI | GCTCC | 4 cut(s) | 157, 487, 863, 898 |
| LweI | GCATC | 5 cut(s) | 162, 289, 1129, 1141, 1332 |
| MabI | ACCWGGT | 1 cut(s) | 748 |
| MaeI | CTAG | 1 cut(s) | 669 |
| MaeII | ACGT | 1 cut(s) | 1039 |
| MaeIII | GTNAC | 3 cut(s) | 142, 461, 1035 |
| MbiI | CCGCTC | 1 cut(s) | 981 |
| MfeI | CAATTG | 1 cut(s) | 553 |
| MflI | RGATCY | 5 cut(s) | 32, 103, 998, 1076, 1090 |
| MhlI | GDGCHC | 5 cut(s) | 198, 655, 903, 1179, 1349 |
| MluCI | AATT | 7 cut(s) | 25, 311, 388, 433, 466, 553, 598 |
| MlyI | GAGTC | 3 cut(s) | 1043, 1220, 1254 |
| MmeI | TCCRAC | 1 cut(s) | 1411 |
| MseI | TTAA | 1 cut(s) | 1419 |
| MspA1I | CMGCKG | 2 cut(s) | 458, 1268 |
| MspI | CCGG | 2 cut(s) | 761, 1362 |
| MspR9I | CCNGG | 4 cut(s) | 698, 750, 774, 1363 |
| MunI | CAATTG | 1 cut(s) | 553 |
| Mva1269I | GAATGC | 2 cut(s) | 632, 895 |
| MvaI | CCWGG | 3 cut(s) | 698, 750, 774 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 94, 202, 277, 362, 728, 818, 872 |
| NciI | CCSGG | 1 cut(s) | 1363 |
| NcoI | CCATGG | 1 cut(s) | 884 |
| NlaIII | CATG | 5 cut(s) | 97, 416, 888, 1054, 1090 |
| NlaIV | GGNNCC | 5 cut(s) | 483, 582, 642, 695, 1092 |
| NmuCI | GTSAC | 1 cut(s) | 1035 |
| NspI | RCATGY | 1 cut(s) | 97 |
| NspV | TTCGAA | 1 cut(s) | 1113 |
| PaeI | GCATGC | 1 cut(s) | 97 |
| PaeR7I | CTCGAG | 1 cut(s) | 1172 |
| PceI | AGGCCT | 1 cut(s) | 133 |
| PciSI | GCTCTTC | 1 cut(s) | 56 |
| PctI | GAATGC | 2 cut(s) | 632, 895 |
| PfeI | GAWTC | 3 cut(s) | 166, 346, 757 |
| PfoI | TCCNGGA | 2 cut(s) | 696, 772 |
| PleI | GAGTC | 3 cut(s) | 1042, 1220, 1254 |
| PpsI | GAGTC | 3 cut(s) | 1042, 1220, 1254 |
| Ppu21I | YACGTR | 1 cut(s) | 1040 |
| PpuMI | RGGWCCY | 1 cut(s) | 581 |
| Psp124BI | GAGCTC | 3 cut(s) | 198, 903, 1179 |
| Psp5II | RGGWCCY | 1 cut(s) | 581 |
| Psp6I | CCWGG | 3 cut(s) | 696, 748, 772 |
| PspGI | CCWGG | 3 cut(s) | 696, 748, 772 |
| PspN4I | GGNNCC | 5 cut(s) | 483, 582, 642, 695, 1092 |
| PspPI | GGNCC | 4 cut(s) | 581, 641, 743, 969 |
| PspPPI | RGGWCCY | 1 cut(s) | 581 |
| PspXI | VCTCGAGB | 1 cut(s) | 1172 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 402, 434 |
| PstI | CTGCAG | 3 cut(s) | 279, 710, 1245 |
| PstNI | CAGNNNCTG | 2 cut(s) | 1102, 1235 |
| PsuI | RGATCY | 5 cut(s) | 32, 103, 998, 1076, 1090 |
| PvuII | CAGCTG | 2 cut(s) | 458, 1268 |
| RsaI | GTAC | 2 cut(s) | 238, 1166 |
| RsaNI | GTAC | 2 cut(s) | 237, 1165 |
| SacI | GAGCTC | 3 cut(s) | 198, 903, 1179 |
| SapI | GCTCTTC | 1 cut(s) | 56 |
| SaqAI | TTAA | 1 cut(s) | 1419 |
| Sau96I | GGNCC | 4 cut(s) | 581, 641, 743, 969 |
| SchI | GAGTC | 3 cut(s) | 1043, 1220, 1254 |
| ScrFI | CCNGG | 4 cut(s) | 698, 750, 774, 1363 |
| SduI | GDGCHC | 5 cut(s) | 198, 655, 903, 1179, 1349 |
| SexAI | ACCWGGT | 1 cut(s) | 748 |
| SfaNI | GCATC | 5 cut(s) | 162, 289, 1129, 1141, 1332 |
| SfcI | CTRYAG | 3 cut(s) | 275, 706, 1241 |
| Sfr274I | CTCGAG | 1 cut(s) | 1172 |
| SfuI | TTCGAA | 1 cut(s) | 1113 |
| SinI | GGWCC | 2 cut(s) | 581, 641 |
| SlaI | CTCGAG | 1 cut(s) | 1172 |
| SmlI | CTYRAG | 3 cut(s) | 152, 1172, 1178 |
| SmoI | CTYRAG | 3 cut(s) | 152, 1172, 1178 |
| SphI | GCATGC | 1 cut(s) | 97 |
| Sse9I | AATT | 7 cut(s) | 25, 311, 388, 433, 466, 553, 598 |
| SseBI | AGGCCT | 1 cut(s) | 133 |
| SsiI | CCGC | 1 cut(s) | 981 |
| SspMI | CTAG | 1 cut(s) | 669 |
| SstI | GAGCTC | 3 cut(s) | 198, 903, 1179 |
| StuI | AGGCCT | 1 cut(s) | 133 |
| StyD4I | CCNGG | 4 cut(s) | 696, 748, 772, 1361 |
| StyI | CCWWGG | 3 cut(s) | 668, 884, 962 |
| TaaI | ACNGT | 4 cut(s) | 74, 797, 916, 1381 |
| TaiI | ACGT | 1 cut(s) | 1042 |
| TaqI | TCGA | 5 cut(s) | 351, 471, 1056, 1113, 1173 |
| TasI | AATT | 7 cut(s) | 25, 311, 388, 433, 466, 553, 598 |
| TatI | WGTACW | 1 cut(s) | 1164 |
| TfiI | GAWTC | 3 cut(s) | 166, 346, 757 |
| Tru1I | TTAA | 1 cut(s) | 1419 |
| Tru9I | TTAA | 1 cut(s) | 1419 |
| TscAI | CASTG | 2 cut(s) | 732, 1236 |
| TseFI | GTSAC | 1 cut(s) | 1035 |
| Tsp45I | GTSAC | 1 cut(s) | 1035 |
| TspDTI | ATGAA | 3 cut(s) | 207, 753, 770 |
| TspRI | CASTG | 2 cut(s) | 732, 1236 |
| VpaK11BI | GGWCC | 2 cut(s) | 581, 641 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1165 |
| XceI | RCATGY | 1 cut(s) | 97 |
| XhoI | CTCGAG | 1 cut(s) | 1172 |
| XmaJI | CCTAGG | 1 cut(s) | 668 |
| XspI | CTAG | 1 cut(s) | 669 |