AT1G28520

transcription factor

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
10029083 .. 10031990
2908 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G28520.5

Sequence Viewer

Length: 1461 bp
ATGACGGGGAAGCGATCAAAGACTAATTGCAGATCTGCTTCTCACAAGCTCTTCAAGGATAAGGCTAAGAACCGTGTTGATGATTTGCAAGGCATGCTTTTGGATCTTCAGTTTGCGAGGAAAGAGAGTAGGCCTACTGATGTTACTCTTCTTGAGGAGCAAGTGAATCAGATGCTTCGTGAGTGGAAATCTGAGCTCAATGAGCCTTCTCCAGCTTCATCCTTGCAACAAGGTGGTACTCTGGGGTCTTTCTCATCAGATATTTGTCGGCTGCTGCAGCTCTGTGATGAGGAAGATGATGCTACCAGCAAATTAGCTGCCCCCAAGCCCGAGCCTGCTGATCAGAATCTCGAAGCTGGCAAAGCTGCTGTCTTCCAAAGGGGATACAATTTGGTTCAGGGGAAGTCAGAACATGGATTACCATTGGTTGATAATTGCAAAGATTTGTCCTTAGCAGCTGGTAACAATTTCGATGGAACGGCTCCTTTGGAGTATCATCAGCAGTATGATCTGCAACAAGAGTTTGAACCAAACTTCAATGGTGGTTTCAACAATTGTCCCAGTTATGGTGTAGTAGAGGGTCCTATACATATCTCTAATTTTATCCCGACTATTTGTCCTCCACCCTCTGCATTCTTGGGTCCAAAATGTGCTCTTTGGGATTGCCCTAGGCCAGCTCAGGGATTTGATTGGTTCCAGGATTACTGCAGCAGCTTCCACGCTGCACTGGCTTTCAATGAAGGGCCACCAGGTATGAATCCGGTGGTGCGTCCTGGAGGTATCGGCCTAAAAGACGGTCTGCTTTTTGCTGCTCTTAGTGCAAAGGCTGGAGGGAAAGATGTTGGTATTCCCGAATGTGAAGGAGCTGCAACTGCTAAATCTCCATGGAATGCTCCAGAGCTCTTTGATCTCACGGTTCTGGAGAGTGAGACACTAAGGGAGTGGCTATTCTTTGACAAGCCAAGGAGGGCCTTTGAGAGCGGGAACAGAAAGCAAAGATCTTTACCAGACTACAATGGTCGTGGTTGGCACGAGTCACGTAAACAGATCATGGTCGAGTTTGGAGGGCTGAAGAGATCTTACTACATGGATCCACAGCCTCTGCACCATTTCGAATGGCATCTTTACGAATATGAGATCAACAAGTGTGATGCTTGTGCCTTGTACAGGCTCGAGCTCAAGCTTGTTGACGGGAAGAAGACTTCAAAAGGCAAAGTCTCAAACGACTCAGTGGCTGATCTGCAGAAGCAGATGGGAAGACTCACAGCTGAGTTCCCTCCAGAAAACAATACCACTAACACCACCAACAACAACAAACGCTGCATCAAAGGAAGACCAAAAGTGAGCACAAAAGTCGCCACCGGGAATGTTCAGAACACAGTAGAGCAGGCAAATGACTATGGAGTAGGTGAAGAGTTTAACTATCTGGTCGGAAATCTAAGCGACTATTATATCCCCTGA

Protein Analysis

486

Amino Acids

54.08

Weight (kDa)

5.73

Isoelectric Point (pI)

44.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 981
AciI CCGC 1 cut(s) 981
AclWI GGATC 3 cut(s) 111, 1085, 1098
AcuI CTGAAG 2 cut(s) 92, 1091
AfaI GTAC 2 cut(s) 238, 1166
AfiI CCNNNNNNNGG 3 cut(s) 566, 680, 1167
AgsI TTSAA 6 cut(s) 55, 527, 538, 550, 736, 1206
AhdI GACNNNNNGTC 1 cut(s) 615
AjnI CCWGG 3 cut(s) 696, 748, 772
Alw21I GWGCWC 5 cut(s) 198, 655, 903, 1179, 1349
Alw26I GTCTC 2 cut(s) 923, 1222
AlwI GGATC 3 cut(s) 111, 1085, 1098
AlwNI CAGNNNCTG 2 cut(s) 1102, 1235
Ama87I CYCGRG 2 cut(s) 329, 1172
AoxI GGCC 5 cut(s) 131, 671, 743, 784, 969
ArsI GACNNNNNNTTYG 2 cut(s) 354, 386
AspA2I CCTAGG 1 cut(s) 668
AspS9I GGNCC 4 cut(s) 581, 641, 743, 969
AsuC2I CCSGG 1 cut(s) 1363
AsuHPI GGTGA 1 cut(s) 1421
AsuII TTCGAA 1 cut(s) 1113
AvaI CYCGRG 2 cut(s) 329, 1172
AvaII GGWCC 2 cut(s) 581, 641
AvrII CCTAGG 1 cut(s) 668
BamHI GGATCC 1 cut(s) 1090
BanII GRGCYC 3 cut(s) 198, 903, 1179
BarI GAAGNNNNNNTAC 2 cut(s) 1064, 1096
BauI CACGAG 1 cut(s) 1031
BbsI GAAGAC 4 cut(s) 364, 1205, 1264, 1339
Bbv12I GWGCWC 5 cut(s) 198, 655, 903, 1179, 1349
BccI CCATC 2 cut(s) 467, 1246
BceAI ACGGC 1 cut(s) 495
BcgI CGANNNNNNTGC 2 cut(s) 1336, 1370
BciT130I CCWGG 3 cut(s) 698, 750, 774
BciVI GTATCC 1 cut(s) 377
BclI TGATCA 1 cut(s) 340
BcnI CCSGG 1 cut(s) 1363
BcoDI GTCTC 2 cut(s) 923, 1222
BfaI CTAG 1 cut(s) 669
BfmI CTRYAG 3 cut(s) 275, 706, 1241
BfuI GTATCC 1 cut(s) 377
BglII AGATCT 3 cut(s) 32, 998, 1076
BlnI CCTAGG 1 cut(s) 668
Bme1390I CCNGG 4 cut(s) 698, 750, 774, 1363
Bme18I GGWCC 2 cut(s) 581, 641
BmeRI GACNNNNNGTC 1 cut(s) 615
BmeT110I CYCGRG 2 cut(s) 329, 1172
BmgT120I GGNCC 4 cut(s) 581, 641, 743, 969
BmiI GGNNCC 5 cut(s) 483, 582, 642, 695, 1092
BmrFI CCNGG 4 cut(s) 698, 750, 774, 1363
BmrI ACTGGG 1 cut(s) 555
BmsI GCATC 5 cut(s) 162, 289, 1129, 1141, 1332
BmuI ACTGGG 1 cut(s) 555
BpiI GAAGAC 4 cut(s) 364, 1205, 1264, 1339
BpmI CTGGAG 6 cut(s) 195, 795, 849, 879, 941, 1263
Bpu10I CCTNAGC 2 cut(s) 451, 678
Bpu14I TTCGAA 1 cut(s) 1113
BpuEI CTTGAG 2 cut(s) 173, 1163
BpuMI CCSGG 1 cut(s) 1363
BsaAI YACGTR 1 cut(s) 1040
BsaBI GATNNNNATC 1 cut(s) 345
BsaJI CCNNGG 3 cut(s) 668, 884, 962
BsaWI WCCGGW 1 cut(s) 760
Bsc4I CCNNNNNNNGG 3 cut(s) 566, 680, 1167
Bse1I ACTGG 2 cut(s) 561, 732
Bse8I GATNNNNATC 1 cut(s) 345
BseBI CCWGG 3 cut(s) 698, 750, 774
BseDI CCNNGG 3 cut(s) 668, 884, 962
BseGI GGATG 1 cut(s) 218
BseJI GATNNNNATC 1 cut(s) 345
BseLI CCNNNNNNNGG 3 cut(s) 566, 680, 1167
BseMII CTCAG 4 cut(s) 183, 692, 1242, 1260
BseNI ACTGG 2 cut(s) 561, 732
BseRI GAGGAG 1 cut(s) 170
BsgI GTGCAG 2 cut(s) 708, 1088
BshFI GGCC 5 cut(s) 133, 673, 745, 786, 971
BsiHKAI GWGCWC 5 cut(s) 198, 655, 903, 1179, 1349
BsiHKCI CYCGRG 2 cut(s) 329, 1172
BsiSI CCGG 2 cut(s) 761, 1362
BslFI GGGAC 1 cut(s) 543
BslI CCNNNNNNNGG 3 cut(s) 566, 680, 1167
BsmAI GTCTC 2 cut(s) 923, 1222
BsmFI GGGAC 1 cut(s) 543
BsmI GAATGC 2 cut(s) 632, 895
BsnI GGCC 5 cut(s) 133, 673, 745, 786, 971
BsoBI CYCGRG 2 cut(s) 329, 1172
Bsp119I TTCGAA 1 cut(s) 1113
Bsp1286I GDGCHC 5 cut(s) 198, 655, 903, 1179, 1349
Bsp1407I TGTACA 1 cut(s) 1164
Bsp19I CCATGG 1 cut(s) 884
BspACI CCGC 1 cut(s) 981
BspANI GGCC 5 cut(s) 133, 673, 745, 786, 971
BspCNI CTCAG 4 cut(s) 184, 691, 1241, 1261
BspLI GGNNCC 5 cut(s) 483, 582, 642, 695, 1092
BspMAI CTGCAG 3 cut(s) 279, 710, 1245
BspPI GGATC 3 cut(s) 111, 1085, 1098
BspQI GCTCTTC 1 cut(s) 56
BspT104I TTCGAA 1 cut(s) 1113
BsrBI CCGCTC 1 cut(s) 981
BsrGI TGTACA 1 cut(s) 1164
BsrI ACTGG 2 cut(s) 561, 732
BssECI CCNNGG 3 cut(s) 668, 884, 962
BssSI CACGAG 1 cut(s) 1031
BssT1I CCWWGG 3 cut(s) 668, 884, 962
Bst2BI CACGAG 1 cut(s) 1031
Bst2UI CCWGG 3 cut(s) 698, 750, 774
Bst4CI ACNGT 4 cut(s) 74, 797, 916, 1381
Bst6I CTCTTC 4 cut(s) 56, 153, 1067, 1407
BstAPI GCANNNNNTGC 1 cut(s) 94
BstAUI TGTACA 1 cut(s) 1164
BstBAI YACGTR 1 cut(s) 1040
BstBI TTCGAA 1 cut(s) 1113
BstC8I GCNNGC 5 cut(s) 95, 336, 358, 675, 1389
BstDEI CTNAG 9 cut(s) 66, 192, 451, 678, 815, 935, 1228, 1269, 1439
BstDSI CCRYGG 1 cut(s) 884
BstENI CCTNNNNNAGG 1 cut(s) 1165
BstF5I GGATG 1 cut(s) 218
BstMAI GTCTC 2 cut(s) 923, 1222
BstMWI GCNNNNNNNGC 7 cut(s) 94, 202, 277, 362, 728, 818, 872
BstNI CCWGG 3 cut(s) 698, 750, 774
BstNSI RCATGY 1 cut(s) 97
BstSCI CCNGG 4 cut(s) 696, 748, 772, 1361
BstSFI CTRYAG 3 cut(s) 275, 706, 1241
BstV2I GAAGAC 4 cut(s) 364, 1205, 1264, 1339
BstX2I RGATCY 5 cut(s) 32, 103, 998, 1076, 1090
BstYI RGATCY 5 cut(s) 32, 103, 998, 1076, 1090
BsuI GTATCC 1 cut(s) 377
BsuRI GGCC 5 cut(s) 133, 673, 745, 786, 971
BtgI CCRYGG 1 cut(s) 884
BtsCI GGATG 1 cut(s) 218
BtsIMutI CAGTG 2 cut(s) 725, 1236
Cac8I GCNNGC 5 cut(s) 95, 336, 358, 675, 1389
CaiI CAGNNNCTG 2 cut(s) 1102, 1235
Cfr13I GGNCC 4 cut(s) 581, 641, 743, 969
CseI GACGC 1 cut(s) 758
CsiI ACCWGGT 1 cut(s) 748
Csp6I GTAC 2 cut(s) 237, 1165
CspCI CAANNNNNGTGG 2 cut(s) 1003, 1038
CviAII CATG 5 cut(s) 94, 413, 885, 1051, 1087
CviQI GTAC 2 cut(s) 237, 1165
DdeI CTNAG 9 cut(s) 66, 192, 451, 678, 815, 935, 1228, 1269, 1439
DriI GACNNNNNGTC 1 cut(s) 615
Eam1104I CTCTTC 4 cut(s) 56, 153, 1067, 1407
Eam1105I GACNNNNNGTC 1 cut(s) 615
EarI CTCTTC 4 cut(s) 56, 153, 1067, 1407
Ecl136II GAGCTC 3 cut(s) 196, 901, 1177
Eco130I CCWWGG 3 cut(s) 668, 884, 962
Eco147I AGGCCT 1 cut(s) 133
Eco24I GRGCYC 3 cut(s) 198, 903, 1179
Eco47I GGWCC 2 cut(s) 581, 641
Eco53kI GAGCTC 3 cut(s) 196, 901, 1177
Eco57I CTGAAG 2 cut(s) 92, 1091
Eco88I CYCGRG 2 cut(s) 329, 1172
EcoICRI GAGCTC 3 cut(s) 196, 901, 1177
EcoNI CCTNNNNNAGG 1 cut(s) 1165
EcoO109I RGGNCCY 2 cut(s) 581, 969
EcoRII CCWGG 3 cut(s) 696, 748, 772
EcoT14I CCWWGG 3 cut(s) 668, 884, 962
EcoT38I GRGCYC 3 cut(s) 198, 903, 1179
ErhI CCWWGG 3 cut(s) 668, 884, 962
FaeI CATG 5 cut(s) 97, 416, 888, 1054, 1090
FalI AAGNNNNNCTT 2 cut(s) 81, 113
FaqI GGGAC 1 cut(s) 543
FatI CATG 5 cut(s) 93, 412, 884, 1050, 1086
FauI CCCGC 1 cut(s) 974
FbaI TGATCA 1 cut(s) 340
FokI GGATG 1 cut(s) 205
FriOI GRGCYC 3 cut(s) 198, 903, 1179
FspBI CTAG 1 cut(s) 669
GsuI CTGGAG 6 cut(s) 195, 795, 849, 879, 941, 1263
HaeIII GGCC 5 cut(s) 133, 673, 745, 786, 971
HapII CCGG 2 cut(s) 761, 1362
HgaI GACGC 1 cut(s) 758
Hin1II CATG 5 cut(s) 97, 416, 888, 1054, 1090
HincII GTYRAC 1 cut(s) 1189
HindII GTYRAC 1 cut(s) 1189
HindIII AAGCTT 1 cut(s) 1181
HinfI GANTC 6 cut(s) 166, 346, 757, 1034, 1226, 1260
HpaII CCGG 2 cut(s) 761, 1362
HphI GGTGA 1 cut(s) 1421
Hpy166II GTNNAC 2 cut(s) 1043, 1189
Hpy188I TCNGA 7 cut(s) 171, 193, 259, 345, 409, 1374, 1433
Hpy188III TCNNGA 8 cut(s) 152, 179, 350, 607, 851, 896, 920, 1280
Hpy8I GTNNAC 2 cut(s) 1043, 1189
HpyAV CCTTC 3 cut(s) 216, 734, 854
HpyCH4III ACNGT 4 cut(s) 74, 797, 916, 1381
HpyCH4IV ACGT 1 cut(s) 1039
HpyF10VI GCNNNNNNNGC 7 cut(s) 94, 202, 277, 362, 728, 818, 872
HpyF3I CTNAG 9 cut(s) 66, 192, 451, 678, 815, 935, 1228, 1269, 1439
HpySE526I ACGT 1 cut(s) 1039
Hsp92II CATG 5 cut(s) 97, 416, 888, 1054, 1090
Ksp22I TGATCA 1 cut(s) 340
LguI GCTCTTC 1 cut(s) 56
LmnI GCTCC 4 cut(s) 157, 487, 863, 898
LweI GCATC 5 cut(s) 162, 289, 1129, 1141, 1332
MabI ACCWGGT 1 cut(s) 748
MaeI CTAG 1 cut(s) 669
MaeII ACGT 1 cut(s) 1039
MaeIII GTNAC 3 cut(s) 142, 461, 1035
MbiI CCGCTC 1 cut(s) 981
MfeI CAATTG 1 cut(s) 553
MflI RGATCY 5 cut(s) 32, 103, 998, 1076, 1090
MhlI GDGCHC 5 cut(s) 198, 655, 903, 1179, 1349
MluCI AATT 7 cut(s) 25, 311, 388, 433, 466, 553, 598
MlyI GAGTC 3 cut(s) 1043, 1220, 1254
MmeI TCCRAC 1 cut(s) 1411
MseI TTAA 1 cut(s) 1419
MspA1I CMGCKG 2 cut(s) 458, 1268
MspI CCGG 2 cut(s) 761, 1362
MspR9I CCNGG 4 cut(s) 698, 750, 774, 1363
MunI CAATTG 1 cut(s) 553
Mva1269I GAATGC 2 cut(s) 632, 895
MvaI CCWGG 3 cut(s) 698, 750, 774
MwoI GCNNNNNNNGC 7 cut(s) 94, 202, 277, 362, 728, 818, 872
NciI CCSGG 1 cut(s) 1363
NcoI CCATGG 1 cut(s) 884
NlaIII CATG 5 cut(s) 97, 416, 888, 1054, 1090
NlaIV GGNNCC 5 cut(s) 483, 582, 642, 695, 1092
NmuCI GTSAC 1 cut(s) 1035
NspI RCATGY 1 cut(s) 97
NspV TTCGAA 1 cut(s) 1113
PaeI GCATGC 1 cut(s) 97
PaeR7I CTCGAG 1 cut(s) 1172
PceI AGGCCT 1 cut(s) 133
PciSI GCTCTTC 1 cut(s) 56
PctI GAATGC 2 cut(s) 632, 895
PfeI GAWTC 3 cut(s) 166, 346, 757
PfoI TCCNGGA 2 cut(s) 696, 772
PleI GAGTC 3 cut(s) 1042, 1220, 1254
PpsI GAGTC 3 cut(s) 1042, 1220, 1254
Ppu21I YACGTR 1 cut(s) 1040
PpuMI RGGWCCY 1 cut(s) 581
Psp124BI GAGCTC 3 cut(s) 198, 903, 1179
Psp5II RGGWCCY 1 cut(s) 581
Psp6I CCWGG 3 cut(s) 696, 748, 772
PspGI CCWGG 3 cut(s) 696, 748, 772
PspN4I GGNNCC 5 cut(s) 483, 582, 642, 695, 1092
PspPI GGNCC 4 cut(s) 581, 641, 743, 969
PspPPI RGGWCCY 1 cut(s) 581
PspXI VCTCGAGB 1 cut(s) 1172
PsrI GAACNNNNNNTAC 2 cut(s) 402, 434
PstI CTGCAG 3 cut(s) 279, 710, 1245
PstNI CAGNNNCTG 2 cut(s) 1102, 1235
PsuI RGATCY 5 cut(s) 32, 103, 998, 1076, 1090
PvuII CAGCTG 2 cut(s) 458, 1268
RsaI GTAC 2 cut(s) 238, 1166
RsaNI GTAC 2 cut(s) 237, 1165
SacI GAGCTC 3 cut(s) 198, 903, 1179
SapI GCTCTTC 1 cut(s) 56
SaqAI TTAA 1 cut(s) 1419
Sau96I GGNCC 4 cut(s) 581, 641, 743, 969
SchI GAGTC 3 cut(s) 1043, 1220, 1254
ScrFI CCNGG 4 cut(s) 698, 750, 774, 1363
SduI GDGCHC 5 cut(s) 198, 655, 903, 1179, 1349
SexAI ACCWGGT 1 cut(s) 748
SfaNI GCATC 5 cut(s) 162, 289, 1129, 1141, 1332
SfcI CTRYAG 3 cut(s) 275, 706, 1241
Sfr274I CTCGAG 1 cut(s) 1172
SfuI TTCGAA 1 cut(s) 1113
SinI GGWCC 2 cut(s) 581, 641
SlaI CTCGAG 1 cut(s) 1172
SmlI CTYRAG 3 cut(s) 152, 1172, 1178
SmoI CTYRAG 3 cut(s) 152, 1172, 1178
SphI GCATGC 1 cut(s) 97
Sse9I AATT 7 cut(s) 25, 311, 388, 433, 466, 553, 598
SseBI AGGCCT 1 cut(s) 133
SsiI CCGC 1 cut(s) 981
SspMI CTAG 1 cut(s) 669
SstI GAGCTC 3 cut(s) 198, 903, 1179
StuI AGGCCT 1 cut(s) 133
StyD4I CCNGG 4 cut(s) 696, 748, 772, 1361
StyI CCWWGG 3 cut(s) 668, 884, 962
TaaI ACNGT 4 cut(s) 74, 797, 916, 1381
TaiI ACGT 1 cut(s) 1042
TaqI TCGA 5 cut(s) 351, 471, 1056, 1113, 1173
TasI AATT 7 cut(s) 25, 311, 388, 433, 466, 553, 598
TatI WGTACW 1 cut(s) 1164
TfiI GAWTC 3 cut(s) 166, 346, 757
Tru1I TTAA 1 cut(s) 1419
Tru9I TTAA 1 cut(s) 1419
TscAI CASTG 2 cut(s) 732, 1236
TseFI GTSAC 1 cut(s) 1035
Tsp45I GTSAC 1 cut(s) 1035
TspDTI ATGAA 3 cut(s) 207, 753, 770
TspRI CASTG 2 cut(s) 732, 1236
VpaK11BI GGWCC 2 cut(s) 581, 641
XagI CCTNNNNNAGG 1 cut(s) 1165
XceI RCATGY 1 cut(s) 97
XhoI CTCGAG 1 cut(s) 1172
XmaJI CCTAGG 1 cut(s) 668
XspI CTAG 1 cut(s) 669
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.