MD17G1234200.v1.1

Transcription factor VOZ1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0001263
Physical Location & Seq
Reverse (-)
28299074 .. 28302666
3593 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1234200.v1.1.491

Sequence Viewer

Length: 1209 bp
ATGACGAAGGAGTCCAAAGGCAAGTGTGAGGCTGCTTCTCACAAGCTACTGAAGGAAAAAGCAAAGACTCGAGTTCAAAAGCTTCGAGGGATGTTCACCAATATTCAAATTGCCAGGAAGGAGGGTCGGACTGCCGACATGGCTATCTTCGAGGACCAAATGGATCAGATGCTTGGCGGGTGGATTGCCGAGCTCAATGACCCGTCCATTGCATCTTCTTTGCATGGTGGTAGCCATGGAAGACTTGAATCATTTTCTGATGATTTAGCCCGGTTCTCCAAACAACAATGTGATGAGAAAGATGATGCAGAAAGTCCATTGAAGGATTTGCCACAACCTAACCTTGAAGGCCCAGAACCTGAGGACTTTATCGTTTCTTTTAAGGGACCTCCAGAAGATATTTTTCAGGACCTTGAATTTCCTGATGTTGTGCCAGATGTTATGCCGGATATATGTCCTCCAGCATCTGCTTTCAAGAGGCCAAAATGTGCTCTTTGGGAATGTTCCAGGCCTGTCCATGTTTTGTGTCAGGACTTTTGCAGTAGTGGCCATGCCCATTTAGCAAGAAATGAAGGTCTTCCTGGGAAAACTCCGGTTCTGCGACCTTGGGGCATCGCTTTGAAGGATGGTTCACTTTTTGCCGCGCTTAATGATAAGACACAGGGGAAGGATGTCGGAATCCCTGATTGTGATGGGGCTGCTACTCTAAGATCTCCATGGGATGATCCGGAGCTATTTGATCTGTTTTTGCACGAGGGTGAAACGCCTAGGGAGTGGCTCTTTTTTGGCAGGCCTAGAAGAGCCTTTGAGAGTGGAAATCGGAAGCGGAGGTTACTGCAAAACTACAGAGGGCGTTGGCATGTATCAAGAACGCAGGAAATGATGGAATATGGGGGGCAGAAAAGGTCCTATTATATGGATCCACAGCCTTCAAGCGATCGCGAGTGGCATTTGTTTGAGTATGAGGTCAACAACTCAGACGCCTGTGCACTATATAGGTTGGAGCTGAAGTTTGGCACGGCAAAGAAAAGTTCCAAAGGAAAACAATCAAATGATCCGGTGGGAAGGCTCACTGCTGAGGCTTCTACAGAAGTTGGAAACAATAGCAAGGGAACAACTAGCAAAAACGCTGAAGCTGGAAATATTTTTGGCTCGGATAATCAGACAAACTCCTTGTACCTAAACCCCGAGATGAGTTGGAAATGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

403

Amino Acids

45.16

Weight (kDa)

5.82

Isoelectric Point (pI)

46.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 10
AccII CGCG 2 cut(s) 644, 942
AccIII TCCGGA 1 cut(s) 727
AciI CCGC 3 cut(s) 177, 642, 826
AclWI GGATC 5 cut(s) 171, 719, 914, 927, 1049
AcoI YGGCCR 1 cut(s) 547
AcsI RAATTY 1 cut(s) 416
AcuI CTGAAG 3 cut(s) 71, 1028, 1152
AcyI GRCGYC 1 cut(s) 981
AfaI GTAC 1 cut(s) 1178
AgsI TTSAA 9 cut(s) 77, 107, 248, 322, 347, 416, 475, 622, 933
AjnI CCWGG 3 cut(s) 113, 506, 580
AleI CACNNNNGTG 1 cut(s) 756
AluBI AGCT 6 cut(s) 46, 82, 193, 733, 1006, 1136
AluI AGCT 6 cut(s) 46, 82, 193, 733, 1006, 1136
Alw21I GWGCWC 3 cut(s) 195, 493, 991
Alw44I GTGCAC 1 cut(s) 987
AlwI GGATC 5 cut(s) 171, 719, 914, 927, 1049
AlwNI CAGNNNCTG 2 cut(s) 359, 467
Ama87I CYCGRG 2 cut(s) 69, 1187
Aor13HI TCCGGA 1 cut(s) 727
AoxI GGCC 5 cut(s) 349, 479, 509, 547, 791
ApaLI GTGCAC 1 cut(s) 987
ApeKI GCWGC 2 cut(s) 32, 698
ApoI RAATTY 1 cut(s) 416
AsiSI GCGATCGC 1 cut(s) 940
Asp700I GAANNNNTTC 1 cut(s) 576
AspA2I CCTAGG 1 cut(s) 767
AspLEI GCGC 1 cut(s) 646
AspS9I GGNCC 5 cut(s) 154, 350, 386, 409, 906
AsuC2I CCSGG 1 cut(s) 271
AsuHPI GGTGA 2 cut(s) 88, 770
AvaI CYCGRG 2 cut(s) 69, 1187
AvaII GGWCC 4 cut(s) 154, 386, 409, 906
AvrII CCTAGG 1 cut(s) 767
AxyI CCTNAGG 1 cut(s) 360
BaeGI GKGCMC 1 cut(s) 991
BalI TGGCCA 1 cut(s) 549
BamHI GGATCC 1 cut(s) 919
BanII GRGCYC 1 cut(s) 195
BauI CACGAG 1 cut(s) 752
BbsI GAAGAC 2 cut(s) 247, 569
Bbv12I GWGCWC 3 cut(s) 195, 493, 991
BbvCI CCTCAGC 1 cut(s) 1077
BbvI GCAGC 2 cut(s) 19, 685
BccI CCATC 3 cut(s) 620, 686, 877
BceAI ACGGC 1 cut(s) 1035
BciT130I CCWGG 3 cut(s) 115, 508, 582
BcnI CCSGG 1 cut(s) 271
BfaI CTAG 3 cut(s) 768, 795, 1119
BfmI CTRYAG 2 cut(s) 844, 1086
BglI GCCNNNNNGGC 1 cut(s) 140
BglII AGATCT 1 cut(s) 710
BisI GCNGC 3 cut(s) 33, 642, 699
BlnI CCTAGG 1 cut(s) 767
BlsI GCNGC 3 cut(s) 34, 643, 700
Bme1390I CCNGG 4 cut(s) 115, 271, 508, 582
Bme18I GGWCC 4 cut(s) 154, 386, 409, 906
BmeT110I CYCGRG 2 cut(s) 69, 1187
BmgT120I GGNCC 5 cut(s) 154, 350, 386, 409, 906
BmiI GGNNCC 2 cut(s) 387, 921
BmrFI CCNGG 4 cut(s) 115, 271, 508, 582
BmsI GCATC 5 cut(s) 159, 221, 295, 473, 621
BpiI GAAGAC 2 cut(s) 247, 569
BpmI CTGGAG 2 cut(s) 375, 444
Bpu10I CCTNAGC 1 cut(s) 1077
BpuMI CCSGG 1 cut(s) 271
BsaHI GRCGYC 1 cut(s) 981
BsaJI CCNNGG 5 cut(s) 235, 581, 605, 716, 767
BsaWI WCCGGW 3 cut(s) 592, 727, 1057
BsaXI ACNNNNNCTCC 2 cut(s) 995, 1025
Bse21I CCTNAGG 1 cut(s) 360
Bse3DI GCAATG 1 cut(s) 207
BseAI TCCGGA 1 cut(s) 727
BseBI CCWGG 3 cut(s) 115, 508, 582
BseDI CCNNGG 5 cut(s) 235, 581, 605, 716, 767
BseGI GGATG 4 cut(s) 96, 631, 676, 727
BseMI GCAATG 1 cut(s) 207
BseMII CTCAG 3 cut(s) 351, 990, 1068
BseSI GKGCMC 1 cut(s) 991
BseXI GCAGC 2 cut(s) 19, 685
Bsh1236I CGCG 2 cut(s) 644, 942
Bsh1285I CGRYCG 1 cut(s) 940
BshFI GGCC 5 cut(s) 351, 481, 511, 549, 793
BsiEI CGRYCG 1 cut(s) 940
BsiHKAI GWGCWC 3 cut(s) 195, 493, 991
BsiHKCI CYCGRG 2 cut(s) 69, 1187
BsiSI CCGG 5 cut(s) 271, 446, 593, 728, 1058
BslFI GGGAC 1 cut(s) 399
BsmFI GGGAC 1 cut(s) 399
BsnI GGCC 5 cut(s) 351, 481, 511, 549, 793
BsoBI CYCGRG 2 cut(s) 69, 1187
Bsp1286I GDGCHC 3 cut(s) 195, 493, 991
Bsp13I TCCGGA 1 cut(s) 727
Bsp143I GATC 7 cut(s) 163, 710, 724, 739, 919, 937, 1054
Bsp19I CCATGG 2 cut(s) 235, 716
Bsp68I TCGCGA 1 cut(s) 942
BspACI CCGC 3 cut(s) 177, 642, 826
BspANI GGCC 5 cut(s) 351, 481, 511, 549, 793
BspCNI CTCAG 3 cut(s) 352, 989, 1069
BspEI TCCGGA 1 cut(s) 727
BspFNI CGCG 2 cut(s) 644, 942
BspLI GGNNCC 2 cut(s) 387, 921
BspPI GGATC 5 cut(s) 171, 719, 914, 927, 1049
BspQI GCTCTTC 1 cut(s) 793
BsrDI GCAATG 1 cut(s) 207
BssECI CCNNGG 5 cut(s) 235, 581, 605, 716, 767
BssMI GATC 7 cut(s) 163, 710, 724, 739, 919, 937, 1054
BssNI GRCGYC 1 cut(s) 981
BssSI CACGAG 1 cut(s) 752
BssT1I CCWWGG 4 cut(s) 235, 605, 716, 767
Bst2BI CACGAG 1 cut(s) 752
Bst2UI CCWGG 3 cut(s) 115, 508, 582
Bst6I CTCTTC 1 cut(s) 793
BstACI GRCGYC 1 cut(s) 981
BstC8I GCNNGC 1 cut(s) 791
BstDEI CTNAG 4 cut(s) 360, 707, 976, 1077
BstDSI CCRYGG 2 cut(s) 235, 716
BstF5I GGATG 4 cut(s) 96, 631, 676, 727
BstFNI CGCG 2 cut(s) 644, 942
BstHHI GCGC 1 cut(s) 646
BstKTI GATC 7 cut(s) 166, 713, 727, 742, 922, 940, 1057
BstMBI GATC 7 cut(s) 163, 710, 724, 739, 919, 937, 1054
BstMCI CGRYCG 1 cut(s) 940
BstMWI GCNNNNNNNGC 3 cut(s) 140, 546, 560
BstNI CCWGG 3 cut(s) 115, 508, 582
BstNSI RCATGY 1 cut(s) 863
BstSCI CCNGG 4 cut(s) 113, 269, 506, 580
BstSFI CTRYAG 2 cut(s) 844, 1086
BstSLI GKGCMC 1 cut(s) 991
BstUI CGCG 2 cut(s) 644, 942
BstV1I GCAGC 2 cut(s) 19, 685
BstV2I GAAGAC 2 cut(s) 247, 569
BstX2I RGATCY 2 cut(s) 710, 919
BstYI RGATCY 2 cut(s) 710, 919
Bsu36I CCTNAGG 1 cut(s) 360
BsuRI GGCC 5 cut(s) 351, 481, 511, 549, 793
BtgI CCRYGG 2 cut(s) 235, 716
BtgZI GCGATG 1 cut(s) 598
BtsCI GGATG 4 cut(s) 96, 631, 676, 727
BtsI GCAGTG 1 cut(s) 1071
BtsIMutI CAGTG 1 cut(s) 1071
BtuMI TCGCGA 1 cut(s) 942
Cac8I GCNNGC 1 cut(s) 791
CaiI CAGNNNCTG 2 cut(s) 359, 467
CfoI GCGC 1 cut(s) 646
Cfr13I GGNCC 5 cut(s) 154, 350, 386, 409, 906
CseI GACGC 1 cut(s) 989
Csp6I GTAC 1 cut(s) 1177
CviAII CATG 7 cut(s) 139, 224, 236, 518, 551, 717, 860
CviQI GTAC 1 cut(s) 1177
DdeI CTNAG 4 cut(s) 360, 707, 976, 1077
DpnI GATC 7 cut(s) 165, 712, 726, 741, 921, 939, 1056
DpnII GATC 7 cut(s) 163, 710, 724, 739, 919, 937, 1054
DrdI GACNNNNNNGTC 1 cut(s) 10
DseDI GACNNNNNNGTC 1 cut(s) 10
EaeI YGGCCR 1 cut(s) 547
Eam1104I CTCTTC 1 cut(s) 793
EarI CTCTTC 1 cut(s) 793
Ecl136II GAGCTC 1 cut(s) 193
Eco130I CCWWGG 4 cut(s) 235, 605, 716, 767
Eco147I AGGCCT 2 cut(s) 511, 793
Eco24I GRGCYC 1 cut(s) 195
Eco47I GGWCC 4 cut(s) 154, 386, 409, 906
Eco53kI GAGCTC 1 cut(s) 193
Eco57I CTGAAG 3 cut(s) 71, 1028, 1152
Eco81I CCTNAGG 1 cut(s) 360
Eco88I CYCGRG 2 cut(s) 69, 1187
EcoICRI GAGCTC 1 cut(s) 193
EcoO109I RGGNCCY 3 cut(s) 386, 409, 906
EcoRII CCWGG 3 cut(s) 113, 506, 580
EcoT14I CCWWGG 4 cut(s) 235, 605, 716, 767
EcoT38I GRGCYC 1 cut(s) 195
ErhI CCWWGG 4 cut(s) 235, 605, 716, 767
FaeI CATG 7 cut(s) 142, 227, 239, 521, 554, 720, 863
FaqI GGGAC 1 cut(s) 399
FatI CATG 7 cut(s) 138, 223, 235, 517, 550, 716, 859
FauI CCCGC 1 cut(s) 170
Fnu4HI GCNGC 3 cut(s) 33, 642, 699
FokI GGATG 4 cut(s) 103, 638, 683, 734
FriOI GRGCYC 1 cut(s) 195
Fsp4HI GCNGC 3 cut(s) 33, 642, 699
FspBI CTAG 3 cut(s) 768, 795, 1119
GlaI GCGC 1 cut(s) 645
GluI GCNGC 3 cut(s) 33, 642, 699
GsuI CTGGAG 2 cut(s) 375, 444
HaeIII GGCC 5 cut(s) 351, 481, 511, 549, 793
HapII CCGG 5 cut(s) 271, 446, 593, 728, 1058
HgaI GACGC 1 cut(s) 989
HhaI GCGC 1 cut(s) 646
Hin1I GRCGYC 1 cut(s) 981
Hin1II CATG 7 cut(s) 142, 227, 239, 521, 554, 720, 863
Hin6I GCGC 1 cut(s) 644
HinP1I GCGC 1 cut(s) 644
HincII GTYRAC 1 cut(s) 970
HindII GTYRAC 1 cut(s) 970
HindIII AAGCTT 1 cut(s) 80
HinfI GANTC 4 cut(s) 11, 67, 248, 678
HpaII CCGG 5 cut(s) 271, 446, 593, 728, 1058
HphI GGTGA 2 cut(s) 88, 770
Hpy166II GTNNAC 4 cut(s) 96, 632, 970, 989
Hpy188I TCNGA 8 cut(s) 129, 168, 259, 677, 822, 979, 1156, 1164
Hpy188III TCNNGA 8 cut(s) 392, 407, 422, 475, 530, 728, 867, 941
Hpy8I GTNNAC 4 cut(s) 96, 632, 970, 989
HpyAV CCTTC 9 cut(s) 46, 112, 316, 341, 566, 616, 661, 939, 1059
HpyCH4V TGCA 7 cut(s) 212, 223, 308, 540, 751, 838, 989
HpyF10VI GCNNNNNNNGC 3 cut(s) 140, 546, 560
HpyF3I CTNAG 4 cut(s) 360, 707, 976, 1077
Hsp92I GRCGYC 1 cut(s) 981
Hsp92II CATG 7 cut(s) 142, 227, 239, 521, 554, 720, 863
HspAI GCGC 1 cut(s) 644
Kpn2I TCCGGA 1 cut(s) 727
Kzo9I GATC 7 cut(s) 163, 710, 724, 739, 919, 937, 1054
LguI GCTCTTC 1 cut(s) 793
LmnI GCTCC 2 cut(s) 730, 1003
Lsp1109I GCAGC 2 cut(s) 19, 685
LweI GCATC 5 cut(s) 159, 221, 295, 473, 621
MaeI CTAG 3 cut(s) 768, 795, 1119
MaeIII GTNAC 1 cut(s) 831
MalI GATC 7 cut(s) 165, 712, 726, 741, 921, 939, 1056
MboI GATC 7 cut(s) 163, 710, 724, 739, 919, 937, 1054
MboII GAAGA 6 cut(s) 139, 207, 252, 407, 569, 810
MflI RGATCY 2 cut(s) 710, 919
MhlI GDGCHC 3 cut(s) 195, 493, 991
MlsI TGGCCA 1 cut(s) 549
MluCI AATT 2 cut(s) 108, 416
MluNI TGGCCA 1 cut(s) 549
MlyI GAGTC 2 cut(s) 20, 61
MmeI TCCRAC 5 cut(s) 107, 655, 981, 1075, 1178
Mox20I TGGCCA 1 cut(s) 549
MroI TCCGGA 1 cut(s) 727
MroXI GAANNNNTTC 1 cut(s) 576
MscI TGGCCA 1 cut(s) 549
MseI TTAA 2 cut(s) 381, 648
MslI CAYNNNNRTG 1 cut(s) 756
Msp20I TGGCCA 1 cut(s) 549
MspI CCGG 5 cut(s) 271, 446, 593, 728, 1058
MspR9I CCNGG 4 cut(s) 115, 271, 508, 582
MvaI CCWGG 3 cut(s) 115, 508, 582
MvnI CGCG 2 cut(s) 644, 942
MwoI GCNNNNNNNGC 3 cut(s) 140, 546, 560
NciI CCSGG 1 cut(s) 271
NcoI CCATGG 2 cut(s) 235, 716
NdeII GATC 7 cut(s) 163, 710, 724, 739, 919, 937, 1054
NlaIII CATG 7 cut(s) 142, 227, 239, 521, 554, 720, 863
NlaIV GGNNCC 2 cut(s) 387, 921
NmeAIII GCCGAG 1 cut(s) 214
NruI TCGCGA 1 cut(s) 942
NspI RCATGY 1 cut(s) 863
OliI CACNNNNGTG 1 cut(s) 756
PaeR7I CTCGAG 1 cut(s) 69
PceI AGGCCT 2 cut(s) 511, 793
PciSI GCTCTTC 1 cut(s) 793
PdmI GAANNNNTTC 1 cut(s) 576
PfeI GAWTC 2 cut(s) 248, 678
PkrI GCNGC 3 cut(s) 34, 643, 700
Ple19I CGATCG 1 cut(s) 940
PleI GAGTC 2 cut(s) 19, 61
PpsI GAGTC 2 cut(s) 19, 61
PpuMI RGGWCCY 3 cut(s) 386, 409, 906
Psp124BI GAGCTC 1 cut(s) 195
Psp5II RGGWCCY 3 cut(s) 386, 409, 906
Psp6I CCWGG 3 cut(s) 113, 506, 580
PspGI CCWGG 3 cut(s) 113, 506, 580
PspN4I GGNNCC 2 cut(s) 387, 921
PspPI GGNCC 5 cut(s) 154, 350, 386, 409, 906
PspPPI RGGWCCY 3 cut(s) 386, 409, 906
PspXI VCTCGAGB 1 cut(s) 69
PstNI CAGNNNCTG 2 cut(s) 359, 467
PsuI RGATCY 2 cut(s) 710, 919
PvuI CGATCG 1 cut(s) 940
RgaI GCGATCGC 1 cut(s) 940
RruI TCGCGA 1 cut(s) 942
RsaI GTAC 1 cut(s) 1178
RsaNI GTAC 1 cut(s) 1177
RseI CAYNNNNRTG 1 cut(s) 756
SacI GAGCTC 1 cut(s) 195
SapI GCTCTTC 1 cut(s) 793
SaqAI TTAA 2 cut(s) 381, 648
SatI GCNGC 3 cut(s) 33, 642, 699
Sau3AI GATC 7 cut(s) 163, 710, 724, 739, 919, 937, 1054
Sau96I GGNCC 5 cut(s) 154, 350, 386, 409, 906
SchI GAGTC 2 cut(s) 20, 61
ScrFI CCNGG 4 cut(s) 115, 271, 508, 582
SduI GDGCHC 3 cut(s) 195, 493, 991
SfaAI GCGATCGC 1 cut(s) 940
SfaNI GCATC 5 cut(s) 159, 221, 295, 473, 621
SfcI CTRYAG 2 cut(s) 844, 1086
Sfr274I CTCGAG 1 cut(s) 69
SgfI GCGATCGC 1 cut(s) 940
SinI GGWCC 4 cut(s) 154, 386, 409, 906
SlaI CTCGAG 1 cut(s) 69
SmiMI CAYNNNNRTG 1 cut(s) 756
SmlI CTYRAG 1 cut(s) 69
SmoI CTYRAG 1 cut(s) 69
Sse9I AATT 2 cut(s) 108, 416
SseBI AGGCCT 2 cut(s) 511, 793
SsiI CCGC 3 cut(s) 177, 642, 826
SspI AATATT 2 cut(s) 103, 1144
SspMI CTAG 3 cut(s) 768, 795, 1119
SstI GAGCTC 1 cut(s) 195
StuI AGGCCT 2 cut(s) 511, 793
StyD4I CCNGG 4 cut(s) 113, 269, 506, 580
StyI CCWWGG 4 cut(s) 235, 605, 716, 767
TaqI TCGA 3 cut(s) 70, 85, 150
TasI AATT 2 cut(s) 108, 416
TauI GCSGC 1 cut(s) 644
TfiI GAWTC 2 cut(s) 248, 678
Tru1I TTAA 2 cut(s) 381, 648
Tru9I TTAA 2 cut(s) 381, 648
TscAI CASTG 1 cut(s) 1078
TseI GCWGC 2 cut(s) 32, 698
TspDTI ATGAA 1 cut(s) 585
TspRI CASTG 1 cut(s) 1078
VneI GTGCAC 1 cut(s) 987
VpaK11BI GGWCC 4 cut(s) 154, 386, 409, 906
XapI RAATTY 1 cut(s) 416
XceI RCATGY 1 cut(s) 863
XhoI CTCGAG 1 cut(s) 69
XmaJI CCTAGG 1 cut(s) 767
XmnI GAANNNNTTC 1 cut(s) 576
XspI CTAG 3 cut(s) 768, 795, 1119
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.