pycom05g28500

Transcription factor

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
Physical Location & Seq
Reverse (-)
29192439 .. 29194115
1677 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g28500.4

Sequence Viewer

Length: 1182 bp
ATGAAGGGTTCAAAGAGCACTTGCAAGTCCGCTTCTCACAAGCTTTTCAAGGACAAAGCAAAGAACCGTGTGGATGACTTGCAGGGCATGTTCACGGACCTCCAGTTTGCCAGGAAGGAGAGCCGCTCCGTCGATGCTGCACTCCTCGAAGAACAAGTGCATCAGATGCTACGCGAGTGGAAAGCCGAGCTAAATGAGCCCTCCTCGGCTTCTTCTTTTCAGCAGCAGGGTGGCAGTCTTGGTTCGTTTTCTTCAGACATTTGCTGGCTGTTGCAGCTATGTGAAGAGGAAGATGATGCCACTAGTCCATTAACTGCACCGAAACCTGAGCCTAATGATCAAAACTTGCAAGTTGGAGAAAGTTTGGCCTTTCATGAGGGATTTAGTGTGAATCAAGGGCAACAGGAACATGCCTTCCCGATGGCTGATCAGTGCAAAAGCTCCCCTTCCGGAGTTCACAATGCTGTTAACAATTTGGAAGGGGCTAATCAATTGGACTATCATCAGTTTGAATTGCATCAAGACTTTGAGCAGAGTTTCTACCCTTGTTTTCATGGCACAGCTTTGAGGGGGGAGGACACATTGTCTCAGGCTTCTACTTATCTCCCGAGTATTTTCCCTCCGCCCTCTGCTTTCTTGGGGCCAAAGTGTGCACTTTGGGATTGCCCTAGGCCTGCTCAAGGGTTTGACTGGTGGCTAGACTACTGCAGTAGCTTTCATGCTGCTTTGGCATTGAATGAAGGACCACCAGGCATGGGGCCGGTCCTTAGACCTGGGGGCATCGGCCTGAAGGATGGCCTACTTTTTGCTGCTCTTAGTGCAAAGGCACAAGGAAAAGGTGTTGGTATCCCTGAGTGCGAGGGAGCTGCTACTGCAAAGTCTCCATGGAATGCACCTGAATTCTTTGATCTTTCGGTTCTTGAGGGTGAGATAATCCGGGAGTGGCTCTTTTTTGACAAGCCTCGAAGAGCTTTTGAGAGCGGTAACAGAAAGCAGAGGTCATTGCCAGATTACAATGGACGAGGTTGGCATGAGTCGAGGAAGCAAGTGATGAATGAGTTTGGAGGGCTGAAGAGGTCTTACTATATGGATCCTCAACCGCTAAACCATTTTGAGTGGCACCTTTATGAGTACGATCGATCAACAAATGTGATGCTTGTGCCTTGTACAGATTGGAGCTGA

Protein Analysis

394

Amino Acids

43.97

Weight (kDa)

5.21

Isoelectric Point (pI)

53.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1119
AccBSI CCGCTC 2 cut(s) 126, 981
AccII CGCG 1 cut(s) 174
AccIII TCCGGA 1 cut(s) 449
AciI CCGC 5 cut(s) 30, 124, 623, 981, 1100
AclWI GGATC 2 cut(s) 1085, 1098
AcsI RAATTY 1 cut(s) 899
AcuI CTGAAG 3 cut(s) 237, 809, 1091
AfaI GTAC 2 cut(s) 1133, 1168
AfiI CCNNNNNNNGG 2 cut(s) 680, 755
AgsI TTSAA 4 cut(s) 12, 49, 512, 736
AhdI GACNNNNNGTC 1 cut(s) 583
AhlI ACTAGT 1 cut(s) 302
AjnI CCWGG 3 cut(s) 110, 748, 772
AloI GAACNNNNNNTCC 2 cut(s) 399, 431
AluBI AGCT 9 cut(s) 43, 190, 277, 441, 563, 714, 866, 971, 1179
AluI AGCT 9 cut(s) 43, 190, 277, 441, 563, 714, 866, 971, 1179
Alw21I GWGCWC 2 cut(s) 20, 655
Alw26I GTCTC 2 cut(s) 591, 885
Alw44I GTGCAC 1 cut(s) 651
AlwI GGATC 2 cut(s) 1085, 1098
Ama87I CYCGRG 1 cut(s) 607
Aor13HI TCCGGA 1 cut(s) 449
AoxI GGCC 6 cut(s) 366, 641, 671, 758, 784, 796
ApaLI GTGCAC 1 cut(s) 651
ApeKI GCWGC 6 cut(s) 137, 223, 274, 722, 809, 866
ApoI RAATTY 1 cut(s) 899
ArsI GACNNNNNNTTYG 2 cut(s) 89, 121
AspA2I CCTAGG 1 cut(s) 668
AspS9I GGNCC 5 cut(s) 97, 641, 743, 758, 763
AsuC2I CCSGG 1 cut(s) 938
AsuHPI GGTGA 1 cut(s) 938
AvaI CYCGRG 1 cut(s) 607
AvaII GGWCC 3 cut(s) 97, 743, 763
AvrII CCTAGG 1 cut(s) 668
BaeGI GKGCMC 1 cut(s) 655
BamHI GGATCC 1 cut(s) 1090
BanI GGYRCC 1 cut(s) 1119
BanII GRGCYC 1 cut(s) 201
BarI GAAGNNNNNNTAC 2 cut(s) 1064, 1096
Bbv12I GWGCWC 2 cut(s) 20, 655
BbvI GCAGC 6 cut(s) 124, 235, 286, 709, 796, 853
BccI CCATC 2 cut(s) 415, 788
BcgI CGANNNNNNTGC 2 cut(s) 848, 882
BciT130I CCWGG 3 cut(s) 112, 750, 774
BciVI GTATCC 1 cut(s) 857
BclI TGATCA 2 cut(s) 337, 427
BcnI CCSGG 1 cut(s) 938
BcoDI GTCTC 2 cut(s) 591, 885
BcuI ACTAGT 1 cut(s) 302
BfaI CTAG 3 cut(s) 303, 669, 698
BfmI CTRYAG 1 cut(s) 706
BfuI GTATCC 1 cut(s) 857
BisI GCNGC 7 cut(s) 124, 138, 224, 275, 723, 810, 867
BlnI CCTAGG 1 cut(s) 668
BlsI GCNGC 7 cut(s) 125, 139, 225, 276, 724, 811, 868
Bme1390I CCNGG 4 cut(s) 112, 750, 774, 938
Bme18I GGWCC 3 cut(s) 97, 743, 763
BmeRI GACNNNNNGTC 1 cut(s) 583
BmeT110I CYCGRG 1 cut(s) 607
BmgT120I GGNCC 5 cut(s) 97, 641, 743, 758, 763
BmiI GGNNCC 4 cut(s) 642, 759, 1092, 1121
BmrFI CCNGG 4 cut(s) 112, 750, 774, 938
BmsI GCATC 7 cut(s) 124, 156, 169, 286, 526, 789, 1143
BplI GAGNNNNNCTC 4 cut(s) 110, 142, 188, 220
BpmI CTGGAG 1 cut(s) 86
Bpu10I CCTNAGC 1 cut(s) 327
BpuEI CTTGAG 2 cut(s) 663, 941
BpuMI CCSGG 1 cut(s) 938
Bsa29I ATCGAT 1 cut(s) 1138
BsaJI CCNNGG 4 cut(s) 204, 668, 773, 884
BsaWI WCCGGW 1 cut(s) 449
Bsc4I CCNNNNNNNGG 2 cut(s) 680, 755
Bse118I RCCGGY 1 cut(s) 760
Bse1I ACTGG 2 cut(s) 103, 695
Bse3DI GCAATG 1 cut(s) 1001
BseAI TCCGGA 1 cut(s) 449
BseBI CCWGG 3 cut(s) 112, 750, 774
BseCI ATCGAT 1 cut(s) 1138
BseDI CCNNGG 4 cut(s) 204, 668, 773, 884
BseGI GGATG 2 cut(s) 79, 799
BseLI CCNNNNNNNGG 2 cut(s) 680, 755
BseMI GCAATG 1 cut(s) 1001
BseMII CTCAG 3 cut(s) 318, 602, 843
BseNI ACTGG 2 cut(s) 103, 695
BseRI GAGGAG 2 cut(s) 134, 193
BseSI GKGCMC 1 cut(s) 655
BseXI GCAGC 6 cut(s) 124, 235, 286, 709, 796, 853
BsgI GTGCAG 2 cut(s) 123, 300
Bsh1236I CGCG 1 cut(s) 174
Bsh1285I CGRYCG 1 cut(s) 1138
BshFI GGCC 6 cut(s) 368, 643, 673, 760, 786, 798
BshNI GGYRCC 1 cut(s) 1119
BshVI ATCGAT 1 cut(s) 1138
BsiEI CGRYCG 1 cut(s) 1138
BsiHKAI GWGCWC 2 cut(s) 20, 655
BsiHKCI CYCGRG 1 cut(s) 607
BsiSI CCGG 3 cut(s) 450, 761, 937
BslI CCNNNNNNNGG 2 cut(s) 680, 755
BsmAI GTCTC 2 cut(s) 591, 885
BsmI GAATGC 1 cut(s) 895
BsnI GGCC 6 cut(s) 368, 643, 673, 760, 786, 798
BsoBI CYCGRG 1 cut(s) 607
Bsp1286I GDGCHC 3 cut(s) 20, 201, 655
Bsp13I TCCGGA 1 cut(s) 449
Bsp1407I TGTACA 1 cut(s) 1166
Bsp143I GATC 6 cut(s) 337, 427, 907, 1090, 1135, 1139
Bsp19I CCATGG 1 cut(s) 884
BspACI CCGC 5 cut(s) 30, 124, 623, 981, 1100
BspANI GGCC 6 cut(s) 368, 643, 673, 760, 786, 798
BspCNI CTCAG 3 cut(s) 319, 601, 844
BspDI ATCGAT 1 cut(s) 1138
BspEI TCCGGA 1 cut(s) 449
BspFNI CGCG 1 cut(s) 174
BspHI TCATGA 1 cut(s) 373
BspLI GGNNCC 4 cut(s) 642, 759, 1092, 1121
BspMAI CTGCAG 1 cut(s) 710
BspPI GGATC 2 cut(s) 1085, 1098
BspQI GCTCTTC 1 cut(s) 961
BspT107I GGYRCC 1 cut(s) 1119
BsrBI CCGCTC 2 cut(s) 126, 981
BsrDI GCAATG 1 cut(s) 1001
BsrFI RCCGGY 1 cut(s) 760
BsrGI TGTACA 1 cut(s) 1166
BsrI ACTGG 2 cut(s) 103, 695
BssAI RCCGGY 1 cut(s) 760
BssECI CCNNGG 4 cut(s) 204, 668, 773, 884
BssMI GATC 6 cut(s) 337, 427, 907, 1090, 1135, 1139
BssT1I CCWWGG 2 cut(s) 668, 884
Bst2UI CCWGG 3 cut(s) 112, 750, 774
Bst4CI ACNGT 1 cut(s) 68
Bst6I CTCTTC 3 cut(s) 279, 961, 1067
BstAPI GCANNNNNTGC 1 cut(s) 166
BstAUI TGTACA 1 cut(s) 1166
BstC8I GCNNGC 2 cut(s) 266, 675
BstDEI CTNAG 5 cut(s) 327, 588, 767, 815, 852
BstDSI CCRYGG 1 cut(s) 884
BstENI CCTNNNNNAGG 1 cut(s) 678
BstF5I GGATG 2 cut(s) 79, 799
BstFNI CGCG 1 cut(s) 174
BstKTI GATC 6 cut(s) 340, 430, 910, 1093, 1138, 1142
BstMAI GTCTC 2 cut(s) 591, 885
BstMBI GATC 6 cut(s) 337, 427, 907, 1090, 1135, 1139
BstMCI CGRYCG 1 cut(s) 1138
BstMWI GCNNNNNNNGC 6 cut(s) 166, 196, 274, 728, 818, 872
BstNI CCWGG 3 cut(s) 112, 750, 774
BstNSI RCATGY 2 cut(s) 91, 413
BstSCI CCNGG 4 cut(s) 110, 748, 772, 936
BstSFI CTRYAG 1 cut(s) 706
BstSLI GKGCMC 1 cut(s) 655
BstUI CGCG 1 cut(s) 174
BstV1I GCAGC 6 cut(s) 124, 235, 286, 709, 796, 853
BstX2I RGATCY 1 cut(s) 1090
BstYI RGATCY 1 cut(s) 1090
Bsu15I ATCGAT 1 cut(s) 1138
BsuI GTATCC 1 cut(s) 857
BsuRI GGCC 6 cut(s) 368, 643, 673, 760, 786, 798
BsuTUI ATCGAT 1 cut(s) 1138
BtgI CCRYGG 1 cut(s) 884
BtsCI GGATG 2 cut(s) 79, 799
BtsIMutI CAGTG 1 cut(s) 437
Cac8I GCNNGC 2 cut(s) 266, 675
CciI TCATGA 1 cut(s) 373
Cfr10I RCCGGY 1 cut(s) 760
Cfr13I GGNCC 5 cut(s) 97, 641, 743, 758, 763
ClaI ATCGAT 1 cut(s) 1138
Csp6I GTAC 2 cut(s) 1132, 1167
CviAII CATG 8 cut(s) 88, 374, 410, 554, 719, 754, 885, 1031
CviQI GTAC 2 cut(s) 1132, 1167
DdeI CTNAG 5 cut(s) 327, 588, 767, 815, 852
DpnI GATC 6 cut(s) 339, 429, 909, 1092, 1137, 1141
DpnII GATC 6 cut(s) 337, 427, 907, 1090, 1135, 1139
DriI GACNNNNNGTC 1 cut(s) 583
Eam1104I CTCTTC 3 cut(s) 279, 961, 1067
Eam1105I GACNNNNNGTC 1 cut(s) 583
EarI CTCTTC 3 cut(s) 279, 961, 1067
EciI GGCGGA 1 cut(s) 612
Eco130I CCWWGG 2 cut(s) 668, 884
Eco147I AGGCCT 1 cut(s) 673
Eco24I GRGCYC 1 cut(s) 201
Eco47I GGWCC 3 cut(s) 97, 743, 763
Eco57I CTGAAG 3 cut(s) 237, 809, 1091
Eco88I CYCGRG 1 cut(s) 607
EcoNI CCTNNNNNAGG 1 cut(s) 678
EcoRI GAATTC 1 cut(s) 899
EcoRII CCWGG 3 cut(s) 110, 748, 772
EcoT14I CCWWGG 2 cut(s) 668, 884
EcoT38I GRGCYC 1 cut(s) 201
ErhI CCWWGG 2 cut(s) 668, 884
FaeI CATG 8 cut(s) 91, 377, 413, 557, 722, 757, 888, 1034
FalI AAGNNNNNCTT 2 cut(s) 430, 462
FatI CATG 8 cut(s) 87, 373, 409, 553, 718, 753, 884, 1030
FbaI TGATCA 2 cut(s) 337, 427
Fnu4HI GCNGC 7 cut(s) 124, 138, 224, 275, 723, 810, 867
FokI GGATG 2 cut(s) 86, 806
FriOI GRGCYC 1 cut(s) 201
Fsp4HI GCNGC 7 cut(s) 124, 138, 224, 275, 723, 810, 867
FspBI CTAG 3 cut(s) 303, 669, 698
GluI GCNGC 7 cut(s) 124, 138, 224, 275, 723, 810, 867
GsuI CTGGAG 1 cut(s) 86
HaeIII GGCC 6 cut(s) 368, 643, 673, 760, 786, 798
HapII CCGG 3 cut(s) 450, 761, 937
Hin1II CATG 8 cut(s) 91, 377, 413, 557, 722, 757, 888, 1034
HincII GTYRAC 1 cut(s) 469
HindII GTYRAC 1 cut(s) 469
HindIII AAGCTT 1 cut(s) 41
HinfI GANTC 2 cut(s) 391, 1034
HpaI GTTAAC 1 cut(s) 469
HpaII CCGG 3 cut(s) 450, 761, 937
HphI GGTGA 1 cut(s) 938
Hpy166II GTNNAC 4 cut(s) 93, 457, 469, 653
Hpy188I TCNGA 2 cut(s) 165, 256
Hpy188III TCNNGA 6 cut(s) 374, 418, 450, 521, 607, 920
Hpy8I GTNNAC 4 cut(s) 93, 457, 469, 653
Hpy99I CGWCG 1 cut(s) 134
HpyAV CCTTC 6 cut(s) 109, 424, 456, 473, 734, 784
HpyCH4III ACNGT 1 cut(s) 68
HpyF10VI GCNNNNNNNGC 6 cut(s) 166, 196, 274, 728, 818, 872
HpyF3I CTNAG 5 cut(s) 327, 588, 767, 815, 852
Hsp92II CATG 8 cut(s) 91, 377, 413, 557, 722, 757, 888, 1034
Kpn2I TCCGGA 1 cut(s) 449
Ksp22I TGATCA 2 cut(s) 337, 427
KspAI GTTAAC 1 cut(s) 469
Kzo9I GATC 6 cut(s) 337, 427, 907, 1090, 1135, 1139
LguI GCTCTTC 1 cut(s) 961
LmnI GCTCC 4 cut(s) 131, 446, 863, 1176
Lsp1109I GCAGC 6 cut(s) 124, 235, 286, 709, 796, 853
LweI GCATC 7 cut(s) 124, 156, 169, 286, 526, 789, 1143
MaeI CTAG 3 cut(s) 303, 669, 698
MaeIII GTNAC 1 cut(s) 983
MalI GATC 6 cut(s) 339, 429, 909, 1092, 1137, 1141
MbiI CCGCTC 2 cut(s) 126, 981
MboI GATC 6 cut(s) 337, 427, 907, 1090, 1135, 1139
MboII GAAGA 7 cut(s) 161, 204, 243, 296, 302, 978, 1084
MfeI CAATTG 1 cut(s) 491
MflI RGATCY 1 cut(s) 1090
MhlI GDGCHC 3 cut(s) 20, 201, 655
MluCI AATT 4 cut(s) 472, 491, 512, 899
MlyI GAGTC 1 cut(s) 1043
MmeI TCCRAC 1 cut(s) 334
MroI TCCGGA 1 cut(s) 449
MseI TTAA 2 cut(s) 311, 468
MslI CAYNNNNRTG 1 cut(s) 1125
MspI CCGG 3 cut(s) 450, 761, 937
MspR9I CCNGG 4 cut(s) 112, 750, 774, 938
MunI CAATTG 1 cut(s) 491
Mva1269I GAATGC 1 cut(s) 895
MvaI CCWGG 3 cut(s) 112, 750, 774
MvnI CGCG 1 cut(s) 174
MwoI GCNNNNNNNGC 6 cut(s) 166, 196, 274, 728, 818, 872
NciI CCSGG 1 cut(s) 938
NcoI CCATGG 1 cut(s) 884
NdeII GATC 6 cut(s) 337, 427, 907, 1090, 1135, 1139
NlaIII CATG 8 cut(s) 91, 377, 413, 557, 722, 757, 888, 1034
NlaIV GGNNCC 4 cut(s) 642, 759, 1092, 1121
NmeAIII GCCGAG 2 cut(s) 185, 211
NspI RCATGY 2 cut(s) 91, 413
PagI TCATGA 1 cut(s) 373
PceI AGGCCT 1 cut(s) 673
PciSI GCTCTTC 1 cut(s) 961
PctI GAATGC 1 cut(s) 895
PfeI GAWTC 1 cut(s) 391
PfoI TCCNGGA 1 cut(s) 936
PkrI GCNGC 7 cut(s) 125, 139, 225, 276, 724, 811, 868
Ple19I CGATCG 1 cut(s) 1138
PleI GAGTC 1 cut(s) 1042
PpsI GAGTC 1 cut(s) 1042
Psp6I CCWGG 3 cut(s) 110, 748, 772
PspGI CCWGG 3 cut(s) 110, 748, 772
PspN4I GGNNCC 4 cut(s) 642, 759, 1092, 1121
PspPI GGNCC 5 cut(s) 97, 641, 743, 758, 763
PstI CTGCAG 1 cut(s) 710
PsuI RGATCY 1 cut(s) 1090
PvuI CGATCG 1 cut(s) 1138
RsaI GTAC 2 cut(s) 1133, 1168
RsaNI GTAC 2 cut(s) 1132, 1167
RseI CAYNNNNRTG 1 cut(s) 1125
SapI GCTCTTC 1 cut(s) 961
SaqAI TTAA 2 cut(s) 311, 468
SatI GCNGC 7 cut(s) 124, 138, 224, 275, 723, 810, 867
Sau3AI GATC 6 cut(s) 337, 427, 907, 1090, 1135, 1139
Sau96I GGNCC 5 cut(s) 97, 641, 743, 758, 763
SchI GAGTC 1 cut(s) 1043
ScrFI CCNGG 4 cut(s) 112, 750, 774, 938
SduI GDGCHC 3 cut(s) 20, 201, 655
SfaNI GCATC 7 cut(s) 124, 156, 169, 286, 526, 789, 1143
SfcI CTRYAG 1 cut(s) 706
SinI GGWCC 3 cut(s) 97, 743, 763
SmiMI CAYNNNNRTG 1 cut(s) 1125
SmlI CTYRAG 2 cut(s) 678, 920
SmoI CTYRAG 2 cut(s) 678, 920
SpeI ACTAGT 1 cut(s) 302
Sse9I AATT 4 cut(s) 472, 491, 512, 899
SseBI AGGCCT 1 cut(s) 673
SsiI CCGC 5 cut(s) 30, 124, 623, 981, 1100
SspMI CTAG 3 cut(s) 303, 669, 698
StuI AGGCCT 1 cut(s) 673
StyD4I CCNGG 4 cut(s) 110, 748, 772, 936
StyI CCWWGG 2 cut(s) 668, 884
TaaI ACNGT 1 cut(s) 68
TaqI TCGA 5 cut(s) 132, 147, 964, 1037, 1138
TasI AATT 4 cut(s) 472, 491, 512, 899
TatI WGTACW 1 cut(s) 1166
TauI GCSGC 1 cut(s) 126
TfiI GAWTC 1 cut(s) 391
Tru1I TTAA 2 cut(s) 311, 468
Tru9I TTAA 2 cut(s) 311, 468
TscAI CASTG 1 cut(s) 437
TseI GCWGC 6 cut(s) 137, 223, 274, 722, 809, 866
TspDTI ATGAA 6 cut(s) 17, 362, 542, 707, 753, 1067
TspGWI ACGGA 2 cut(s) 110, 118
TspRI CASTG 1 cut(s) 437
VneI GTGCAC 1 cut(s) 651
VpaK11BI GGWCC 3 cut(s) 97, 743, 763
XagI CCTNNNNNAGG 1 cut(s) 678
XapI RAATTY 1 cut(s) 899
XceI RCATGY 2 cut(s) 91, 413
XmaJI CCTAGG 1 cut(s) 668
XspI CTAG 3 cut(s) 303, 669, 698
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.