Rh2BG339600

Transcription factor VOZ1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0001263
Physical Location & Seq
Forward (+)
45273643 .. 45277301
3659 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG339600.1

Sequence Viewer

Length: 1338 bp
ATGATCAAGGACTCCAAGGGCAAGTGTGAGTCGTCGTCTCACAAGCTCTTGAAGGAAAAAGCAAAGACTCGCGTGGACTACCTTCAAGCATTTCTGACCAATCTCAAGAGTGCGACAAAGGAGAGCCGGACTGATGACAATGCAACCTTGGAGGAAGTGAATAAGATGCTTCAGGAGTGGAAAGCTGAGCTCAATGAGCCGTCTCCTGCGTCTTCTCTACTAGCTGATAGTCTGGGATCGTTTTCAGAGGAGTTAGCACGTCTCTTGAGAACTGATGAGGAGGATGATGCAACAAGTCCATTAAAGGAATTGCTACCTACTAAGCCAGAAAGCGATCTTCAAAACCTTCATTTGGGTAATTTGGTGCAATTTACAGAGGATTTTTATGTTTCTCCGGAGCCTCAAGAAACTTTTCAAGAATTTTATCAATGCGGAGATACTGCTTCAGGTTTCCAGAATCTAATGGTCGATAACTCTGGTTTTGATCATCACTTTGATTTTCATCAATATGTCAATGAAGGGCCATTCATTGGGGGGAACGATGTGAAACAGCCTGAAGAGGATGCTGCGCCAAGTGTTTTGCCAGTTATCTCTCCTACAGAACCTTCTTTTTTGGGGCCAACATGTGCTCTTTGGGATTGTTCCAGGCCTGCGGAATGTGGAAAGGACTATTGCTGTAACTTTCATGCTACATCAGCATTAGAAGAGGGTCAACCTGGAAAATCCCCAGTTTTTCGTCCTCGTGGCATTTCGTTAAAGGATAATGCACTTTTTGATGCACTTATTGCTTGGAATCAGGGAAAAGCTGTGGGCATACCCAATTGTGAAGGGGCAGCTACTCTAAAATCTCCATGGAATGACTCTAAGCTATTCAATCTTTCTTTCCTTGAGGGTGAAACAGTTAGAGAGTGGCTCTTTTTTGATAAGCCTAGAAGGGCCTTTGGGACTGGAAACAGAAGGCAGAGGTCATTGCCAGATCACAGTGGACGTGGTTGGCATGAATCAAGAAAGCAGATCATGAAGGAATTTGATGGGCAGAAAAGGTCCTATTATATGGATCCACAGCCCTCAATTGATCAGGACTGGCATTTGTTTGAATATGAGGTCAACAATTCTGATGCCTGTGCTCTATATAGGTTGGAGTTAAAGTTTGGCAGTGTAAAGAAAAGTCCAAAAGGAAAAGTATCAAATGAGGTTGCTGATCTGCAAAAGAAGATGGGAAAGCTCACTGCTGAGGTTGCCACTGATGGTGCAAACAATGCCAAAGGGAAAACTAAGAAAAAGGCTGATGCTGGCAATATTTTTTCTTCTCAAAGTCCGATGACTTCAACTCCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

445

Amino Acids

49.68

Weight (kDa)

5.34

Isoelectric Point (pI)

54.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 530
AccII CGCG 1 cut(s) 72
AccIII TCCGGA 1 cut(s) 394
AciI CCGC 2 cut(s) 432, 653
AclWI GGATC 3 cut(s) 244, 1052, 1065
AcsI RAATTY 2 cut(s) 419, 1025
AcuI CTGAAG 3 cut(s) 155, 429, 576
AfiI CCNNNNNNNGG 2 cut(s) 352, 530
AflIII ACRYGT 1 cut(s) 623
AgsI TTSAA 7 cut(s) 52, 86, 341, 416, 874, 1097, 1329
AjiI CACGTC 2 cut(s) 260, 989
AjnI CCWGG 2 cut(s) 644, 715
AluBI AGCT 8 cut(s) 46, 185, 190, 224, 806, 836, 868, 1225
AluI AGCT 8 cut(s) 46, 185, 190, 224, 806, 836, 868, 1225
Alw21I GWGCWC 3 cut(s) 192, 631, 1129
Alw26I GTCTC 3 cut(s) 42, 207, 266
AlwI GGATC 3 cut(s) 244, 1052, 1065
Aor13HI TCCGGA 1 cut(s) 394
AoxI GGCC 4 cut(s) 521, 617, 647, 936
ApeKI GCWGC 2 cut(s) 566, 833
ApoI RAATTY 2 cut(s) 419, 1025
Asp700I GAANNNNTTC 1 cut(s) 411
AspLEI GCGC 1 cut(s) 571
AspS9I GGNCC 4 cut(s) 521, 617, 936, 1044
AsuHPI GGTGA 1 cut(s) 905
AvaII GGWCC 1 cut(s) 1044
BamHI GGATCC 1 cut(s) 1057
BanII GRGCYC 1 cut(s) 192
BauI CACGAG 1 cut(s) 741
BbsI GAAGAC 1 cut(s) 204
Bbv12I GWGCWC 3 cut(s) 192, 631, 1129
BbvCI CCTCAGC 1 cut(s) 1233
BbvI GCAGC 2 cut(s) 553, 845
BccI CCATC 3 cut(s) 1025, 1210, 1241
BceAI ACGGC 1 cut(s) 184
BciT130I CCWGG 2 cut(s) 646, 717
BclI TGATCA 3 cut(s) 3, 484, 1075
BcoDI GTCTC 3 cut(s) 42, 207, 266
BfaI CTAG 2 cut(s) 221, 930
BfmI CTRYAG 1 cut(s) 597
BisI GCNGC 2 cut(s) 567, 834
BlpI GCTNAGC 1 cut(s) 186
BlsI GCNGC 2 cut(s) 568, 835
Bme1390I CCNGG 2 cut(s) 646, 717
Bme18I GGWCC 1 cut(s) 1044
BmgBI CACGTC 2 cut(s) 260, 989
BmgT120I GGNCC 4 cut(s) 521, 617, 936, 1044
BmiI GGNNCC 3 cut(s) 399, 618, 1059
BmrFI CCNGG 2 cut(s) 646, 717
BmrI ACTGGG 1 cut(s) 722
BmsI GCATC 6 cut(s) 156, 277, 553, 766, 1108, 1279
BmuI ACTGGG 1 cut(s) 722
BpiI GAAGAC 1 cut(s) 204
BplI GAGNNNNNCTC 2 cut(s) 897, 929
Bpu10I CCTNAGC 1 cut(s) 1233
Bpu1102I GCTNAGC 1 cut(s) 186
BpuEI CTTGAG 4 cut(s) 89, 286, 387, 908
BsaBI GATNNNNATC 1 cut(s) 501
BsaJI CCNNGG 3 cut(s) 15, 147, 851
BsaWI WCCGGW 1 cut(s) 394
BsaXI ACNNNNNCTCC 3 cut(s) 1133, 1163, 1315
Bsc4I CCNNNNNNNGG 2 cut(s) 352, 530
Bse1I ACTGG 4 cut(s) 584, 728, 952, 1088
Bse3DI GCAATG 1 cut(s) 968
Bse8I GATNNNNATC 1 cut(s) 501
BseAI TCCGGA 1 cut(s) 394
BseBI CCWGG 2 cut(s) 646, 717
BseDI CCNNGG 3 cut(s) 15, 147, 851
BseGI GGATG 2 cut(s) 289, 568
BseJI GATNNNNATC 1 cut(s) 501
BseLI CCNNNNNNNGG 2 cut(s) 352, 530
BseMI GCAATG 1 cut(s) 968
BseMII CTCAG 2 cut(s) 177, 1224
BseNI ACTGG 4 cut(s) 584, 728, 952, 1088
BseRI GAGGAG 2 cut(s) 263, 293
BseXI GCAGC 2 cut(s) 553, 845
Bsh1236I CGCG 1 cut(s) 72
BshFI GGCC 4 cut(s) 523, 619, 649, 938
BsiHKAI GWGCWC 3 cut(s) 192, 631, 1129
BsiSI CCGG 2 cut(s) 127, 395
BslFI GGGAC 1 cut(s) 958
BslI CCNNNNNNNGG 2 cut(s) 352, 530
BsmAI GTCTC 3 cut(s) 42, 207, 266
BsmBI CGTCTC 3 cut(s) 42, 207, 266
BsmFI GGGAC 1 cut(s) 958
BsnI GGCC 4 cut(s) 523, 619, 649, 938
Bsp1286I GDGCHC 3 cut(s) 192, 631, 1129
Bsp13I TCCGGA 1 cut(s) 394
Bsp143I GATC 9 cut(s) 3, 236, 334, 484, 976, 1014, 1057, 1075, 1201
Bsp1720I GCTNAGC 1 cut(s) 186
Bsp19I CCATGG 1 cut(s) 851
BspACI CCGC 2 cut(s) 432, 653
BspANI GGCC 4 cut(s) 523, 619, 649, 938
BspCNI CTCAG 2 cut(s) 178, 1225
BspEI TCCGGA 1 cut(s) 394
BspFNI CGCG 1 cut(s) 72
BspHI TCATGA 1 cut(s) 1017
BspLI GGNNCC 3 cut(s) 399, 618, 1059
BspPI GGATC 3 cut(s) 244, 1052, 1065
BsrDI GCAATG 1 cut(s) 968
BsrI ACTGG 4 cut(s) 584, 728, 952, 1088
BssECI CCNNGG 3 cut(s) 15, 147, 851
BssMI GATC 9 cut(s) 3, 236, 334, 484, 976, 1014, 1057, 1075, 1201
BssSI CACGAG 1 cut(s) 741
BssT1I CCWWGG 3 cut(s) 15, 147, 851
Bst2BI CACGAG 1 cut(s) 741
Bst2UI CCWGG 2 cut(s) 646, 717
Bst4CI ACNGT 2 cut(s) 901, 983
Bst6I CTCTTC 2 cut(s) 552, 699
BstAPI GCANNNNNTGC 2 cut(s) 785, 1259
BstC8I GCNNGC 2 cut(s) 651, 1294
BstDEI CTNAG 5 cut(s) 186, 321, 864, 1233, 1275
BstDSI CCRYGG 1 cut(s) 851
BstF5I GGATG 2 cut(s) 289, 568
BstFNI CGCG 1 cut(s) 72
BstHHI GCGC 1 cut(s) 571
BstKTI GATC 9 cut(s) 6, 239, 337, 487, 979, 1017, 1060, 1078, 1204
BstMAI GTCTC 3 cut(s) 42, 207, 266
BstMBI GATC 9 cut(s) 3, 236, 334, 484, 976, 1014, 1057, 1075, 1201
BstMWI GCNNNNNNNGC 5 cut(s) 196, 695, 785, 1238, 1259
BstNI CCWGG 2 cut(s) 646, 717
BstNSI RCATGY 1 cut(s) 627
BstSCI CCNGG 2 cut(s) 644, 715
BstSFI CTRYAG 1 cut(s) 597
BstUI CGCG 1 cut(s) 72
BstV1I GCAGC 2 cut(s) 553, 845
BstV2I GAAGAC 1 cut(s) 204
BstX2I RGATCY 1 cut(s) 1057
BstYI RGATCY 1 cut(s) 1057
BsuRI GGCC 4 cut(s) 523, 619, 649, 938
BtgI CCRYGG 1 cut(s) 851
BtrI CACGTC 2 cut(s) 260, 989
BtsCI GGATG 2 cut(s) 289, 568
BtsI GCAGTG 2 cut(s) 1162, 1227
BtsIMutI CAGTG 4 cut(s) 988, 1162, 1227, 1242
Cac8I GCNNGC 2 cut(s) 651, 1294
CciI TCATGA 1 cut(s) 1017
CfoI GCGC 1 cut(s) 571
Cfr13I GGNCC 4 cut(s) 521, 617, 936, 1044
CseI GACGC 1 cut(s) 198
CviAII CATG 5 cut(s) 624, 686, 852, 998, 1018
DdeI CTNAG 5 cut(s) 186, 321, 864, 1233, 1275
DpnI GATC 9 cut(s) 5, 238, 336, 486, 978, 1016, 1059, 1077, 1203
DpnII GATC 9 cut(s) 3, 236, 334, 484, 976, 1014, 1057, 1075, 1201
Eam1104I CTCTTC 2 cut(s) 552, 699
EarI CTCTTC 2 cut(s) 552, 699
Ecl136II GAGCTC 1 cut(s) 190
Eco130I CCWWGG 3 cut(s) 15, 147, 851
Eco147I AGGCCT 1 cut(s) 649
Eco24I GRGCYC 1 cut(s) 192
Eco47I GGWCC 1 cut(s) 1044
Eco53kI GAGCTC 1 cut(s) 190
Eco57I CTGAAG 3 cut(s) 155, 429, 576
EcoICRI GAGCTC 1 cut(s) 190
EcoO109I RGGNCCY 2 cut(s) 936, 1044
EcoRII CCWGG 2 cut(s) 644, 715
EcoT14I CCWWGG 3 cut(s) 15, 147, 851
EcoT38I GRGCYC 1 cut(s) 192
ErhI CCWWGG 3 cut(s) 15, 147, 851
Esp3I CGTCTC 3 cut(s) 42, 207, 266
FaeI CATG 5 cut(s) 627, 689, 855, 1001, 1021
FaqI GGGAC 1 cut(s) 958
FatI CATG 5 cut(s) 623, 685, 851, 997, 1017
FbaI TGATCA 3 cut(s) 3, 484, 1075
Fnu4HI GCNGC 2 cut(s) 567, 834
FokI GGATG 2 cut(s) 296, 575
FriOI GRGCYC 1 cut(s) 192
Fsp4HI GCNGC 2 cut(s) 567, 834
FspBI CTAG 2 cut(s) 221, 930
GlaI GCGC 1 cut(s) 570
GluI GCNGC 2 cut(s) 567, 834
HaeIII GGCC 4 cut(s) 523, 619, 649, 938
HapII CCGG 2 cut(s) 127, 395
HgaI GACGC 1 cut(s) 198
HhaI GCGC 1 cut(s) 571
Hin1II CATG 5 cut(s) 627, 689, 855, 1001, 1021
Hin6I GCGC 1 cut(s) 569
HinP1I GCGC 1 cut(s) 569
HincII GTYRAC 2 cut(s) 713, 1108
HindII GTYRAC 2 cut(s) 713, 1108
HinfI GANTC 7 cut(s) 11, 29, 67, 457, 793, 860, 1001
HpaII CCGG 2 cut(s) 127, 395
HphI GGTGA 1 cut(s) 905
Hpy166II GTNNAC 4 cut(s) 76, 713, 986, 1108
Hpy188I TCNGA 4 cut(s) 96, 247, 1117, 1320
Hpy8I GTNNAC 4 cut(s) 76, 713, 986, 1108
Hpy99I CGWCG 1 cut(s) 37
HpyAV CCTTC 9 cut(s) 46, 92, 356, 512, 615, 821, 927, 951, 1015
HpyCH4III ACNGT 2 cut(s) 901, 983
HpyCH4IV ACGT 2 cut(s) 259, 988
HpyCH4V TGCA 7 cut(s) 143, 290, 367, 767, 779, 1207, 1253
HpyF10VI GCNNNNNNNGC 5 cut(s) 196, 695, 785, 1238, 1259
HpyF3I CTNAG 5 cut(s) 186, 321, 864, 1233, 1275
HpySE526I ACGT 2 cut(s) 259, 988
Hsp92II CATG 5 cut(s) 627, 689, 855, 1001, 1021
HspAI GCGC 1 cut(s) 569
Kpn2I TCCGGA 1 cut(s) 394
Ksp22I TGATCA 3 cut(s) 3, 484, 1075
Kzo9I GATC 9 cut(s) 3, 236, 334, 484, 976, 1014, 1057, 1075, 1201
LmnI GCTCC 1 cut(s) 397
Lsp1109I GCAGC 2 cut(s) 553, 845
LweI GCATC 6 cut(s) 156, 277, 553, 766, 1108, 1279
MaeI CTAG 2 cut(s) 221, 930
MaeII ACGT 2 cut(s) 259, 988
MaeIII GTNAC 1 cut(s) 677
MalI GATC 9 cut(s) 5, 238, 336, 486, 978, 1016, 1059, 1077, 1203
MboI GATC 9 cut(s) 3, 236, 334, 484, 976, 1014, 1057, 1075, 1201
MboII GAAGA 6 cut(s) 204, 329, 569, 716, 1225, 1299
MfeI CAATTG 2 cut(s) 820, 1071
MflI RGATCY 1 cut(s) 1057
MhlI GDGCHC 3 cut(s) 192, 631, 1129
MluCI AATT 8 cut(s) 308, 358, 368, 419, 820, 1025, 1071, 1111
MlyI GAGTC 4 cut(s) 5, 38, 61, 854
MmeI TCCRAC 1 cut(s) 1119
MroI TCCGGA 1 cut(s) 394
MroXI GAANNNNTTC 1 cut(s) 411
MseI TTAA 3 cut(s) 302, 755, 1145
MslI CAYNNNNRTG 1 cut(s) 507
MspI CCGG 2 cut(s) 127, 395
MspR9I CCNGG 2 cut(s) 646, 717
MunI CAATTG 2 cut(s) 820, 1071
MvaI CCWGG 2 cut(s) 646, 717
MvnI CGCG 1 cut(s) 72
MwoI GCNNNNNNNGC 5 cut(s) 196, 695, 785, 1238, 1259
NcoI CCATGG 1 cut(s) 851
NdeII GATC 9 cut(s) 3, 236, 334, 484, 976, 1014, 1057, 1075, 1201
NlaIII CATG 5 cut(s) 627, 689, 855, 1001, 1021
NlaIV GGNNCC 3 cut(s) 399, 618, 1059
NspI RCATGY 1 cut(s) 627
PagI TCATGA 1 cut(s) 1017
PceI AGGCCT 1 cut(s) 649
PciI ACATGT 1 cut(s) 623
PdmI GAANNNNTTC 1 cut(s) 411
PfeI GAWTC 3 cut(s) 457, 793, 1001
PflMI CCANNNNNTGG 1 cut(s) 530
PkrI GCNGC 2 cut(s) 568, 835
PleI GAGTC 4 cut(s) 5, 37, 61, 854
PpsI GAGTC 4 cut(s) 5, 37, 61, 854
PpuMI RGGWCCY 1 cut(s) 1044
PscI ACATGT 1 cut(s) 623
Psp124BI GAGCTC 1 cut(s) 192
Psp5II RGGWCCY 1 cut(s) 1044
Psp6I CCWGG 2 cut(s) 644, 715
PspGI CCWGG 2 cut(s) 644, 715
PspN4I GGNNCC 3 cut(s) 399, 618, 1059
PspPI GGNCC 4 cut(s) 521, 617, 936, 1044
PspPPI RGGWCCY 1 cut(s) 1044
PsuI RGATCY 1 cut(s) 1057
RseI CAYNNNNRTG 1 cut(s) 507
SacI GAGCTC 1 cut(s) 192
SaqAI TTAA 3 cut(s) 302, 755, 1145
SatI GCNGC 2 cut(s) 567, 834
Sau3AI GATC 9 cut(s) 3, 236, 334, 484, 976, 1014, 1057, 1075, 1201
Sau96I GGNCC 4 cut(s) 521, 617, 936, 1044
SchI GAGTC 4 cut(s) 5, 38, 61, 854
ScrFI CCNGG 2 cut(s) 646, 717
SduI GDGCHC 3 cut(s) 192, 631, 1129
SfaNI GCATC 6 cut(s) 156, 277, 553, 766, 1108, 1279
SfcI CTRYAG 1 cut(s) 597
SinI GGWCC 1 cut(s) 1044
SmiMI CAYNNNNRTG 1 cut(s) 507
SmlI CTYRAG 4 cut(s) 104, 265, 402, 887
SmoI CTYRAG 4 cut(s) 104, 265, 402, 887
Sse9I AATT 8 cut(s) 308, 358, 368, 419, 820, 1025, 1071, 1111
SseBI AGGCCT 1 cut(s) 649
SsiI CCGC 2 cut(s) 432, 653
SspI AATATT 1 cut(s) 1300
SspMI CTAG 2 cut(s) 221, 930
SstI GAGCTC 1 cut(s) 192
StuI AGGCCT 1 cut(s) 649
StyD4I CCNGG 2 cut(s) 644, 715
StyI CCWWGG 3 cut(s) 15, 147, 851
TaaI ACNGT 2 cut(s) 901, 983
TaiI ACGT 2 cut(s) 262, 991
TaqI TCGA 1 cut(s) 468
TasI AATT 8 cut(s) 308, 358, 368, 419, 820, 1025, 1071, 1111
TfiI GAWTC 3 cut(s) 457, 793, 1001
Tru1I TTAA 3 cut(s) 302, 755, 1145
Tru9I TTAA 3 cut(s) 302, 755, 1145
TscAI CASTG 4 cut(s) 988, 1162, 1234, 1249
TseI GCWGC 2 cut(s) 566, 833
TspDTI ATGAA 7 cut(s) 338, 491, 517, 531, 674, 1014, 1034
TspRI CASTG 4 cut(s) 988, 1162, 1234, 1249
Van91I CCANNNNNTGG 1 cut(s) 530
VpaK11BI GGWCC 1 cut(s) 1044
XapI RAATTY 2 cut(s) 419, 1025
XceI RCATGY 1 cut(s) 627
XmnI GAANNNNTTC 1 cut(s) 411
XspI CTAG 2 cut(s) 221, 930
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.