FvH4_6g26850

Transcription factor VOZ1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0001263
Physical Location & Seq
Forward (+)
20533593 .. 20537894
4302 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g26850.t3

Sequence Viewer

Length: 1374 bp
ATGATCAAGGACTCCAAGGGTAGGTGTGAGTCTTCATCTCACAAGCTTGTGAAAGAAAAAACAAAGAATCGCTTGGACCAGCTTCAAGCATTAATTACCAAGAAGAATGAGAGCCAAACTAATGACACTGCAACCTTGGTGGAAGTGAATAAGATGCTTCAGGAGTGGAAAGCTGAGCTCAATGGGCCGTCTCCTGCATCTTCTCTACTAGCTGATAGTCTGGGATCATTTTCAGAGGAGTTAACACGTCTCTTGAGAACTGATGAGGAGGATGATGCAATAAGTCCATTAAAGGAATTTCTACCTGCGAAGCCAGAGAGTGATCTACAAAATCTTCATTTGGGTAATTTGATGCAATTTACAGAGGATTTTTATGTTTCTCCGGAGCCTCAAGAGCTTCAAGAAAGTTTTCAGGACTTTAATTACTGTAAAGATACTGCTTCAGGCTTTCAAGACTTCTATCAATGCAATGATACTGCTTCAGGCTTCCAGAATCTAATGGTCGACAACTCTGGTTTCGATAATCACTTTGATTTTCATCAATATGTCAATGAAGGCCCATTCATTGAGGGAAACGATGTCAAACAGCTCGAAGAGGATGCCGTGCCAAATGTTTTGCCAGTTATCTCTCCTACTGAACCCCCTTTTTTGGGGCCATCATGTGCTCTTTGGGACTGTTCCAGGCCTGCAGAATGTGGAAAGGACTATTGCTGTAACTTTCATGCTACCTCAGCATTAGAAGAGGGTCAGCCCGGAAAATCTCCAGTTTTTCGTCCTCGTGGCATTTCTGTGAAGGACAGTGCACTTTTTGACGCTCTTATTGCTTGGAATCAAGGAAAAGCTGTGGGCATACCCAATTGTGAAGGGGCTGCTATTCTAAAATCTCCATGGAATGACTCTAAGCTATTCAATCTTTCTTTCCTTGAGGGTGAAGCAGTTAGAGAGTGGCTCTTTTTTGATAAGCCTAGAAGGGCCTTTGGGTCAGGAAACAGAAGACAAAGGTCATTGCCAGATCATAGTGGACGTGGTTGGCATGAATCCAGAAAGCAGATCATGAAGGAATTTGATGGGCAGAAAAGGTCATATTATATGGATCCACAGCCTTCAAGTGATCAGGATTGGCATTTGTTTGAATATGAGGTCAACAACTCTGATGCCTGTGCTCTATATAGGTTGGAGTTAAAGTTTGGCAGTGTAAAGAGAAGTCCAAAAGGAAAAGTATCAAATGAGGTTGCTGATCTGCAGAAGAAGATGGGGAAGCTCACTGCTGAGGTTGCCACTGATGGTGCAACGAATGTCAAAGGAAAAGCCAAGAAAAAGGCTAATGCTGGGAATATTTTTTCTTCTCAAAGTCCAATGACTTCAACTCCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

458

Amino Acids

51.15

Weight (kDa)

5.28

Isoelectric Point (pI)

57.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 313
AccI GTMKAC 1 cut(s) 504
AccIII TCCGGA 1 cut(s) 382
AclWI GGATC 3 cut(s) 232, 1088, 1101
AcsI RAATTY 2 cut(s) 296, 1061
AcuI CTGAAG 3 cut(s) 143, 426, 465
AfiI CCNNNNNNNGG 3 cut(s) 21, 649, 650
AflIII ACRYGT 1 cut(s) 245
AgsI TTSAA 7 cut(s) 86, 401, 452, 910, 1107, 1133, 1365
AjiI CACGTC 2 cut(s) 248, 1025
AjnI CCWGG 1 cut(s) 680
Alw21I GWGCWC 4 cut(s) 180, 667, 805, 1165
Alw26I GTCTC 2 cut(s) 195, 254
Alw44I GTGCAC 1 cut(s) 801
AlwI GGATC 3 cut(s) 232, 1088, 1101
Aor13HI TCCGGA 1 cut(s) 382
AoxI GGCC 5 cut(s) 185, 556, 653, 683, 972
ApaLI GTGCAC 1 cut(s) 801
ApeKI GCWGC 1 cut(s) 869
ApoI RAATTY 2 cut(s) 296, 1061
AseI ATTAAT 1 cut(s) 92
Asp700I GAANNNNTTC 1 cut(s) 408
AspS9I GGNCC 5 cut(s) 76, 185, 557, 653, 972
AsuC2I CCSGG 1 cut(s) 753
AsuHPI GGTGA 1 cut(s) 941
AvaII GGWCC 1 cut(s) 76
BaeGI GKGCMC 1 cut(s) 805
BamHI GGATCC 1 cut(s) 1093
BanII GRGCYC 1 cut(s) 180
BauI CACGAG 1 cut(s) 777
BbsI GAAGAC 2 cut(s) 24, 1000
Bbv12I GWGCWC 4 cut(s) 180, 667, 805, 1165
BbvCI CCTCAGC 2 cut(s) 730, 1269
BbvI GCAGC 1 cut(s) 856
BccI CCATC 4 cut(s) 664, 1061, 1246, 1277
BceAI ACGGC 2 cut(s) 172, 587
BcgI CGANNNNNNTGC 2 cut(s) 581, 615
BciT130I CCWGG 1 cut(s) 682
BclI TGATCA 2 cut(s) 3, 1111
BcnI CCSGG 1 cut(s) 753
BcoDI GTCTC 2 cut(s) 195, 254
BfaI CTAG 2 cut(s) 209, 966
BfmI CTRYAG 2 cut(s) 687, 1241
BfuAI ACCTGC 1 cut(s) 313
BisI GCNGC 1 cut(s) 870
BlpI GCTNAGC 1 cut(s) 174
BlsI GCNGC 1 cut(s) 871
Bme1390I CCNGG 2 cut(s) 682, 753
Bme18I GGWCC 1 cut(s) 76
BmgBI CACGTC 2 cut(s) 248, 1025
BmgT120I GGNCC 5 cut(s) 76, 185, 557, 653, 972
BmiI GGNNCC 3 cut(s) 387, 654, 1095
BmrFI CCNGG 2 cut(s) 682, 753
BmsI GCATC 6 cut(s) 144, 206, 265, 342, 589, 1144
BoxI GACNNNNGTC 1 cut(s) 1000
BpiI GAAGAC 2 cut(s) 24, 1000
BplI GAGNNNNNCTC 2 cut(s) 933, 965
BpmI CTGGAG 1 cut(s) 747
Bpu10I CCTNAGC 2 cut(s) 730, 1269
Bpu1102I GCTNAGC 1 cut(s) 174
BpuEI CTTGAG 3 cut(s) 274, 375, 944
BpuMI CCSGG 1 cut(s) 753
BsaBI GATNNNNATC 1 cut(s) 537
BsaJI CCNNGG 3 cut(s) 15, 135, 887
BsaWI WCCGGW 1 cut(s) 382
BsaXI ACNNNNNCTCC 3 cut(s) 1169, 1199, 1351
Bsc4I CCNNNNNNNGG 3 cut(s) 21, 649, 650
Bse1I ACTGG 2 cut(s) 620, 764
Bse3DI GCAATG 2 cut(s) 475, 1004
Bse8I GATNNNNATC 1 cut(s) 537
BseAI TCCGGA 1 cut(s) 382
BseBI CCWGG 1 cut(s) 682
BseDI CCNNGG 3 cut(s) 15, 135, 887
BseGI GGATG 2 cut(s) 277, 604
BseJI GATNNNNATC 1 cut(s) 537
BseLI CCNNNNNNNGG 3 cut(s) 21, 649, 650
BseMI GCAATG 2 cut(s) 475, 1004
BseMII CTCAG 3 cut(s) 165, 744, 1260
BseNI ACTGG 2 cut(s) 620, 764
BseRI GAGGAG 2 cut(s) 251, 281
BseSI GKGCMC 1 cut(s) 805
BseXI GCAGC 1 cut(s) 856
BseYI CCCAGC 1 cut(s) 1328
BshFI GGCC 5 cut(s) 187, 558, 655, 685, 974
BsiHKAI GWGCWC 4 cut(s) 180, 667, 805, 1165
BsiSI CCGG 2 cut(s) 383, 753
BslFI GGGAC 1 cut(s) 686
BslI CCNNNNNNNGG 3 cut(s) 21, 649, 650
BsmAI GTCTC 2 cut(s) 195, 254
BsmBI CGTCTC 2 cut(s) 195, 254
BsmFI GGGAC 1 cut(s) 686
BsnI GGCC 5 cut(s) 187, 558, 655, 685, 974
Bsp1286I GDGCHC 4 cut(s) 180, 667, 805, 1165
Bsp13I TCCGGA 1 cut(s) 382
Bsp143I GATC 8 cut(s) 3, 224, 322, 1012, 1050, 1093, 1111, 1237
Bsp1720I GCTNAGC 1 cut(s) 174
Bsp19I CCATGG 1 cut(s) 887
BspANI GGCC 5 cut(s) 187, 558, 655, 685, 974
BspCNI CTCAG 3 cut(s) 166, 743, 1261
BspEI TCCGGA 1 cut(s) 382
BspHI TCATGA 1 cut(s) 1053
BspLI GGNNCC 3 cut(s) 387, 654, 1095
BspMAI CTGCAG 2 cut(s) 691, 1245
BspMI ACCTGC 1 cut(s) 313
BspPI GGATC 3 cut(s) 232, 1088, 1101
BsrDI GCAATG 2 cut(s) 475, 1004
BsrI ACTGG 2 cut(s) 620, 764
BssECI CCNNGG 3 cut(s) 15, 135, 887
BssMI GATC 8 cut(s) 3, 224, 322, 1012, 1050, 1093, 1111, 1237
BssSI CACGAG 1 cut(s) 777
BssT1I CCWWGG 3 cut(s) 15, 135, 887
Bst2BI CACGAG 1 cut(s) 777
Bst2UI CCWGG 1 cut(s) 682
Bst4CI ACNGT 3 cut(s) 428, 677, 800
Bst6I CTCTTC 2 cut(s) 588, 735
BstC8I GCNNGC 1 cut(s) 687
BstDEI CTNAG 4 cut(s) 174, 730, 900, 1269
BstDSI CCRYGG 1 cut(s) 887
BstF5I GGATG 2 cut(s) 277, 604
BstKTI GATC 8 cut(s) 6, 227, 325, 1015, 1053, 1096, 1114, 1240
BstMAI GTCTC 2 cut(s) 195, 254
BstMBI GATC 8 cut(s) 3, 224, 322, 1012, 1050, 1093, 1111, 1237
BstMWI GCNNNNNNNGC 5 cut(s) 184, 394, 731, 821, 1274
BstNI CCWGG 1 cut(s) 682
BstPAI GACNNNNGTC 1 cut(s) 1000
BstSCI CCNGG 2 cut(s) 680, 751
BstSFI CTRYAG 2 cut(s) 687, 1241
BstSLI GKGCMC 1 cut(s) 805
BstV1I GCAGC 1 cut(s) 856
BstV2I GAAGAC 2 cut(s) 24, 1000
BstX2I RGATCY 1 cut(s) 1093
BstYI RGATCY 1 cut(s) 1093
BsuRI GGCC 5 cut(s) 187, 558, 655, 685, 974
BtgI CCRYGG 1 cut(s) 887
BtrI CACGTC 2 cut(s) 248, 1025
BtsCI GGATG 2 cut(s) 277, 604
BtsI GCAGTG 3 cut(s) 126, 1198, 1263
BtsIMutI CAGTG 5 cut(s) 126, 805, 1198, 1263, 1278
BveI ACCTGC 1 cut(s) 313
Cac8I GCNNGC 1 cut(s) 687
CciI TCATGA 1 cut(s) 1053
Cfr13I GGNCC 5 cut(s) 76, 185, 557, 653, 972
CseI GACGC 1 cut(s) 821
CspCI CAANNNNNGTGG 2 cut(s) 120, 155
CviAII CATG 5 cut(s) 660, 722, 888, 1034, 1054
DdeI CTNAG 4 cut(s) 174, 730, 900, 1269
DpnI GATC 8 cut(s) 5, 226, 324, 1014, 1052, 1095, 1113, 1239
DpnII GATC 8 cut(s) 3, 224, 322, 1012, 1050, 1093, 1111, 1237
Eam1104I CTCTTC 2 cut(s) 588, 735
EarI CTCTTC 2 cut(s) 588, 735
Ecl136II GAGCTC 1 cut(s) 178
Eco130I CCWWGG 3 cut(s) 15, 135, 887
Eco147I AGGCCT 1 cut(s) 685
Eco24I GRGCYC 1 cut(s) 180
Eco47I GGWCC 1 cut(s) 76
Eco53kI GAGCTC 1 cut(s) 178
Eco57I CTGAAG 3 cut(s) 143, 426, 465
EcoICRI GAGCTC 1 cut(s) 178
EcoO109I RGGNCCY 1 cut(s) 972
EcoRII CCWGG 1 cut(s) 680
EcoT14I CCWWGG 3 cut(s) 15, 135, 887
EcoT38I GRGCYC 1 cut(s) 180
ErhI CCWWGG 3 cut(s) 15, 135, 887
Esp3I CGTCTC 2 cut(s) 195, 254
FaeI CATG 5 cut(s) 663, 725, 891, 1037, 1057
FalI AAGNNNNNCTT 2 cut(s) 56, 88
FaqI GGGAC 1 cut(s) 686
FatI CATG 5 cut(s) 659, 721, 887, 1033, 1053
FbaI TGATCA 2 cut(s) 3, 1111
FblI GTMKAC 1 cut(s) 504
Fnu4HI GCNGC 1 cut(s) 870
FokI GGATG 2 cut(s) 284, 611
FriOI GRGCYC 1 cut(s) 180
Fsp4HI GCNGC 1 cut(s) 870
FspBI CTAG 2 cut(s) 209, 966
GluI GCNGC 1 cut(s) 870
GsaI CCCAGC 1 cut(s) 1332
GsuI CTGGAG 1 cut(s) 747
HaeIII GGCC 5 cut(s) 187, 558, 655, 685, 974
HapII CCGG 2 cut(s) 383, 753
HgaI GACGC 1 cut(s) 821
Hin1II CATG 5 cut(s) 663, 725, 891, 1037, 1057
HincII GTYRAC 3 cut(s) 243, 505, 1144
HindII GTYRAC 3 cut(s) 243, 505, 1144
HindIII AAGCTT 1 cut(s) 44
HinfI GANTC 7 cut(s) 11, 29, 67, 493, 829, 896, 1037
HpaI GTTAAC 1 cut(s) 243
HpaII CCGG 2 cut(s) 383, 753
HphI GGTGA 1 cut(s) 941
Hpy166II GTNNAC 5 cut(s) 243, 505, 803, 1022, 1144
Hpy188I TCNGA 2 cut(s) 235, 1153
Hpy8I GTNNAC 5 cut(s) 243, 505, 803, 1022, 1144
HpyAV CCTTC 6 cut(s) 548, 787, 857, 963, 1051, 1113
HpyCH4III ACNGT 3 cut(s) 428, 677, 800
HpyCH4IV ACGT 2 cut(s) 247, 1024
HpyCH4V TGCA 9 cut(s) 131, 197, 278, 355, 468, 689, 803, 1243, 1289
HpyF10VI GCNNNNNNNGC 5 cut(s) 184, 394, 731, 821, 1274
HpyF3I CTNAG 4 cut(s) 174, 730, 900, 1269
HpySE526I ACGT 2 cut(s) 247, 1024
Hsp92II CATG 5 cut(s) 663, 725, 891, 1037, 1057
Kpn2I TCCGGA 1 cut(s) 382
Ksp22I TGATCA 2 cut(s) 3, 1111
KspAI GTTAAC 1 cut(s) 243
Kzo9I GATC 8 cut(s) 3, 224, 322, 1012, 1050, 1093, 1111, 1237
LmnI GCTCC 1 cut(s) 385
Lsp1109I GCAGC 1 cut(s) 856
LweI GCATC 6 cut(s) 144, 206, 265, 342, 589, 1144
MaeI CTAG 2 cut(s) 209, 966
MaeII ACGT 2 cut(s) 247, 1024
MaeIII GTNAC 1 cut(s) 713
MalI GATC 8 cut(s) 5, 226, 324, 1014, 1052, 1095, 1113, 1239
MboI GATC 8 cut(s) 3, 224, 322, 1012, 1050, 1093, 1111, 1237
MfeI CAATTG 1 cut(s) 856
MflI RGATCY 1 cut(s) 1093
MhlI GDGCHC 4 cut(s) 180, 667, 805, 1165
MluCI AATT 7 cut(s) 93, 296, 346, 356, 421, 856, 1061
MlyI GAGTC 3 cut(s) 5, 38, 890
MmeI TCCRAC 1 cut(s) 1155
MroI TCCGGA 1 cut(s) 382
MroXI GAANNNNTTC 1 cut(s) 408
MseI TTAA 5 cut(s) 92, 242, 290, 420, 1181
MslI CAYNNNNRTG 2 cut(s) 543, 788
MspI CCGG 2 cut(s) 383, 753
MspR9I CCNGG 2 cut(s) 682, 753
MunI CAATTG 1 cut(s) 856
MvaI CCWGG 1 cut(s) 682
MwoI GCNNNNNNNGC 5 cut(s) 184, 394, 731, 821, 1274
NciI CCSGG 1 cut(s) 753
NcoI CCATGG 1 cut(s) 887
NdeII GATC 8 cut(s) 3, 224, 322, 1012, 1050, 1093, 1111, 1237
NlaIII CATG 5 cut(s) 663, 725, 891, 1037, 1057
NlaIV GGNNCC 3 cut(s) 387, 654, 1095
PagI TCATGA 1 cut(s) 1053
PceI AGGCCT 1 cut(s) 685
PdmI GAANNNNTTC 1 cut(s) 408
PfeI GAWTC 4 cut(s) 67, 493, 829, 1037
PkrI GCNGC 1 cut(s) 871
PleI GAGTC 3 cut(s) 5, 37, 890
PpsI GAGTC 3 cut(s) 5, 37, 890
PshAI GACNNNNGTC 1 cut(s) 1000
PshBI ATTAAT 1 cut(s) 92
Psp124BI GAGCTC 1 cut(s) 180
Psp6I CCWGG 1 cut(s) 680
PspFI CCCAGC 1 cut(s) 1328
PspGI CCWGG 1 cut(s) 680
PspN4I GGNNCC 3 cut(s) 387, 654, 1095
PspPI GGNCC 5 cut(s) 76, 185, 557, 653, 972
PstI CTGCAG 2 cut(s) 691, 1245
PsuI RGATCY 1 cut(s) 1093
RseI CAYNNNNRTG 2 cut(s) 543, 788
SacI GAGCTC 1 cut(s) 180
SalI GTCGAC 1 cut(s) 503
SaqAI TTAA 5 cut(s) 92, 242, 290, 420, 1181
SatI GCNGC 1 cut(s) 870
Sau3AI GATC 8 cut(s) 3, 224, 322, 1012, 1050, 1093, 1111, 1237
Sau96I GGNCC 5 cut(s) 76, 185, 557, 653, 972
SchI GAGTC 3 cut(s) 5, 38, 890
ScrFI CCNGG 2 cut(s) 682, 753
SduI GDGCHC 4 cut(s) 180, 667, 805, 1165
SfaNI GCATC 6 cut(s) 144, 206, 265, 342, 589, 1144
SfcI CTRYAG 2 cut(s) 687, 1241
SinI GGWCC 1 cut(s) 76
SmiMI CAYNNNNRTG 2 cut(s) 543, 788
SmlI CTYRAG 3 cut(s) 253, 390, 923
SmoI CTYRAG 3 cut(s) 253, 390, 923
Sse9I AATT 7 cut(s) 93, 296, 346, 356, 421, 856, 1061
SseBI AGGCCT 1 cut(s) 685
SspI AATATT 1 cut(s) 1336
SspMI CTAG 2 cut(s) 209, 966
SstI GAGCTC 1 cut(s) 180
StuI AGGCCT 1 cut(s) 685
StyD4I CCNGG 2 cut(s) 680, 751
StyI CCWWGG 3 cut(s) 15, 135, 887
TaaI ACNGT 3 cut(s) 428, 677, 800
TaiI ACGT 2 cut(s) 250, 1027
TaqI TCGA 3 cut(s) 504, 519, 591
TasI AATT 7 cut(s) 93, 296, 346, 356, 421, 856, 1061
TfiI GAWTC 4 cut(s) 67, 493, 829, 1037
Tru1I TTAA 5 cut(s) 92, 242, 290, 420, 1181
Tru9I TTAA 5 cut(s) 92, 242, 290, 420, 1181
TscAI CASTG 5 cut(s) 133, 805, 1198, 1270, 1285
TseI GCWGC 1 cut(s) 869
TspDTI ATGAA 8 cut(s) 24, 326, 527, 553, 567, 710, 1050, 1070
TspRI CASTG 5 cut(s) 133, 805, 1198, 1270, 1285
VneI GTGCAC 1 cut(s) 801
VpaK11BI GGWCC 1 cut(s) 76
VspI ATTAAT 1 cut(s) 92
XapI RAATTY 2 cut(s) 296, 1061
XmiI GTMKAC 1 cut(s) 504
XmnI GAANNNNTTC 1 cut(s) 408
XspI CTAG 2 cut(s) 209, 966
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.