Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0001263

Physical Location & Seq

Genomic Coordinates Reverse (-)

59991809 .. 59994588

Gene Structure 2780 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0443900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGGATGATGATTCATTGAACATGCCCAATTGGGGATACTATGAGGCCTCTTTTAAAGGCCATCTTGGCCTGCAGCTTATGACAAGCATGGGTGAGCGTGACACGAAACCTTTTATACCTGGGCGTGATCCTCCGGTCATGGTTAGCGCCAATGGATATCATCCTCGGGATTGTGTTGTACAGGATGCTCCTGTTCCAATGAGCAACTATATGAGGGAGAGTTGGATTAACCAGAGGGATAAGTTTCTCACTATGATGCCGGCCAATCCTAATTATGGTGTTCTTCCGGAAACTTCAGTCGCTCAGCACTCCATGCAGATCTTACAGCCACCTCCTGATGCATCAAGGGATGAGAGGGTGAATAGAATGGAAGAGCCAGTTGTCCATAAGGAAGGTGGCCCTTCAAAGAAAAGGCAGAATGGTGGTGCCCCGAAAGCCCCAAAGGTGAAGAAGCCGAGGAAGCCAAAGGACAATAGCAACCCTGCGGTTCCACGTGTGAAGCCCGCAAAAAAGAGTTTGGATGTTGTCATAAACGGGATTACCATGGACATTTCAGGCATTCCAATTCCAGTTTGCTCATGTACTGGAGCTCCCCAACAGTGTTATCGATGGGGGTGTGGTGGTTGGCAATCCGCTTGTTGCACTACAAATGTGTCTATGTATCCTTTGCCAATGAGCACTAAACGGCGGGGTGCTAGGATAGCTGGAAGAAAAATGAGTCAGGGGGCTTTTAAAAAGGTATTGGAGAAGCTTGCAGCTGAAGGTTATAACTTTGCTAATCCAATTGATTTGAGGACTCACTGGGCAAGACATGGTACAAATAAGTTCGTCACAATCAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0002376 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0006355 GO:0006950 GO:0006952 GO:0006955 GO:0007275 GO:0008150 GO:0009266 GO:0009314 GO:0009408 GO:0009409 GO:0009414 GO:0009415 GO:0009416 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009631 GO:0009648 GO:0009791 GO:0009814 GO:0009816 GO:0009889 GO:0009891 GO:0009893 GO:0010035 GO:0010228 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0042221 GO:0042742 GO:0043207 GO:0043565 GO:0045087 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048571 GO:0048573 GO:0048574 GO:0048578 GO:0048580 GO:0048582 GO:0048583 GO:0048584 GO:0048586 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051173 GO:0051239 GO:0051240 GO:0051252 GO:0051254 GO:0051704 GO:0051707 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0097159 GO:0098542 GO:1901363 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000026 GO:2000028 GO:2000112 GO:2000241 GO:2000243 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

280

Amino Acids

31.14

Weight (kDa)

9.66

Isoelectric Point (pI)

47.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GAGA_bind	PF06217	2 - 280	1.4e-97	GAGA binding protein-like family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001263)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28520 AT1G28520 AT1G28520 AT1G28520 AT1G28520
fragaria_vesca	FvH4_3g08390 FvH4_3g08390 FvH4_3g08390 FvH4_3g08390 FvH4_3g08390 FvH4_3g08390 FvH4_6g26850 FvH4_6g26850 FvH4_6g26850 FvH4_6g26850 FvH4_6g26850 FvH4_6g26850 FvH4_6g26850
malus_domestica	MD05G1308300.v1.1 MD10G1287300.v1.1 MD17G1234200.v1.1
prunus_persica	Prupe.3G127200_v2.0.a1 Prupe.3G127200_v2.0.a1 Prupe.3G127200_v2.0.a1 Prupe.4G054500_v2.0.a1 Prupe.4G054500_v2.0.a1
pyrus_communis	pycom05g28500 pycom10g24030 pycom17g23750
rosa_chinensis	RchiOBHm_Chr2g0128221 RchiOBHm_Chr5g0009511
rosa_laevigata	RLG00000018998 RLG00000031668
rosa_multiflora	Rmu_sc0000837.1_g000011 Rmu_sc0002711.1_g000012 Rmu_sc0003465.1_g000003
rosa_roxburghii	Rroxscaffold_1G00066620 Rroxscaffold_1G00067320 Rroxscaffold_2G00115480 Rroxscaffold_2G00115940
rosa_rugosa	Rorug02G0278700 Rorug04G0443800 Rorug04G0443800 Rorug04G0443900 Rorug04G0444000
rosa_samantha	Rh2AG331400 Rh2BG339600 Rh2CG317900 Rh2DG356500 Rh5AG074800 Rh5BG070600 Rh5CG083000 Rh5DG070800
rosa_wichuraiana	Rw2G026810 Rw5G006930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	768
AccB1I	GGYRCC	1 cut(s)	425
AccIII	TCCGGA	1 cut(s)	286
AciI	CCGC	4 cut(s)	485, 504, 633, 688
AclWI	GGATC	1 cut(s)	122
AcoI	YGGCCR	1 cut(s)	261
AcuI	CTGAAG	2 cut(s)	279, 780
AcvI	CACGTG	1 cut(s)	494
AfaI	GTAC	3 cut(s)	180, 583, 817
AfiI	CCNNNNNNNGG	2 cut(s)	32, 275
AflIII	ACRYGT	1 cut(s)	493
AgsI	TTSAA	2 cut(s)	19, 405
AjnI	CCWGG	1 cut(s)	118
AluBI	AGCT	5 cut(s)	76, 590, 704, 751, 758
AluI	AGCT	5 cut(s)	76, 590, 704, 751, 758
Alw21I	GWGCWC	2 cut(s)	592, 680
AlwI	GGATC	1 cut(s)	122
Ama87I	CYCGRG	1 cut(s)	165
Aor13HI	TCCGGA	1 cut(s)	286
AoxI	GGCC	5 cut(s)	45, 58, 67, 261, 397
ApeKI	GCWGC	2 cut(s)	73, 755
AspLEI	GCGC	1 cut(s)	149
AspS9I	GGNCC	1 cut(s)	398
AsuHPI	GGTGA	3 cut(s)	104, 370, 457
AvaI	CYCGRG	1 cut(s)	165
BaeGI	GKGCMC	1 cut(s)	430
BanI	GGYRCC	1 cut(s)	425
BanII	GRGCYC	1 cut(s)	592
BbrPI	CACGTG	1 cut(s)	494
Bbv12I	GWGCWC	2 cut(s)	592, 680
BbvI	GCAGC	2 cut(s)	85, 767
BccI	CCATC	2 cut(s)	69, 603
BceAI	ACGGC	1 cut(s)	701
BciT130I	CCWGG	1 cut(s)	120
BciVI	GTATCC	2 cut(s)	29, 672
BfaI	CTAG	1 cut(s)	696
BfmI	CTRYAG	1 cut(s)	71
BfoI	RGCGCY	1 cut(s)	150
BfuI	GTATCC	2 cut(s)	29, 672
BglI	GCCNNNNNGGC	1 cut(s)	66
BglII	AGATCT	1 cut(s)	318
BisI	GCNGC	2 cut(s)	74, 756
BlpI	GCTNAGC	1 cut(s)	303
BlsI	GCNGC	2 cut(s)	75, 757
Bme1390I	CCNGG	1 cut(s)	120
BmeT110I	CYCGRG	1 cut(s)	165
BmgT120I	GGNCC	1 cut(s)	398
BmiI	GGNNCC	2 cut(s)	427, 489
BmrFI	CCNGG	1 cut(s)	120
BmrI	ACTGGG	1 cut(s)	811
BmsI	GCATC	4 cut(s)	175, 246, 328, 350
BmuI	ACTGGG	1 cut(s)	811
BpmI	CTGGAG	1 cut(s)	606
Bpu1102I	GCTNAGC	1 cut(s)	303
Bsa29I	ATCGAT	1 cut(s)	607
BsaAI	YACGTR	1 cut(s)	494
BsaJI	CCNNGG	4 cut(s)	119, 164, 455, 543
BsaWI	WCCGGW	2 cut(s)	133, 286
BsaXI	ACNNNNNCTCC	2 cut(s)	574, 604
Bsc4I	CCNNNNNNNGG	2 cut(s)	32, 275
Bse118I	RCCGGY	1 cut(s)	259
Bse1I	ACTGG	4 cut(s)	377, 569, 589, 806
BseAI	TCCGGA	1 cut(s)	286
BseBI	CCWGG	1 cut(s)	120
BseCI	ATCGAT	1 cut(s)	607
BseDI	CCNNGG	4 cut(s)	119, 164, 455, 543
BseGI	GGATG	5 cut(s)	10, 160, 190, 355, 526
BseLI	CCNNNNNNNGG	2 cut(s)	32, 275
BseMII	CTCAG	1 cut(s)	317
BseNI	ACTGG	4 cut(s)	377, 569, 589, 806
BseSI	GKGCMC	1 cut(s)	430
BseXI	GCAGC	2 cut(s)	85, 767
BshFI	GGCC	5 cut(s)	47, 60, 69, 263, 399
BshNI	GGYRCC	1 cut(s)	425
BshVI	ATCGAT	1 cut(s)	607
BsiHKAI	GWGCWC	2 cut(s)	592, 680
BsiHKCI	CYCGRG	1 cut(s)	165
BsiSI	CCGG	3 cut(s)	134, 260, 287
BslI	CCNNNNNNNGG	2 cut(s)	32, 275
BsmI	GAATGC	1 cut(s)	558
BsnI	GGCC	5 cut(s)	47, 60, 69, 263, 399
BsoBI	CYCGRG	1 cut(s)	165
Bsp1286I	GDGCHC	3 cut(s)	430, 592, 680
Bsp13I	TCCGGA	1 cut(s)	286
Bsp1407I	TGTACA	1 cut(s)	178
Bsp143I	GATC	2 cut(s)	127, 318
Bsp1720I	GCTNAGC	1 cut(s)	303
Bsp19I	CCATGG	1 cut(s)	543
BspACI	CCGC	4 cut(s)	485, 504, 633, 688
BspANI	GGCC	5 cut(s)	47, 60, 69, 263, 399
BspCNI	CTCAG	1 cut(s)	316
BspDI	ATCGAT	1 cut(s)	607
BspEI	TCCGGA	1 cut(s)	286
BspLI	GGNNCC	2 cut(s)	427, 489
BspMAI	CTGCAG	1 cut(s)	75
BspPI	GGATC	1 cut(s)	122
BspQI	GCTCTTC	1 cut(s)	366
BspT107I	GGYRCC	1 cut(s)	425
BsrFI	RCCGGY	1 cut(s)	259
BsrGI	TGTACA	1 cut(s)	178
BsrI	ACTGG	4 cut(s)	377, 569, 589, 806
BssAI	RCCGGY	1 cut(s)	259
BssECI	CCNNGG	4 cut(s)	119, 164, 455, 543
BssMI	GATC	2 cut(s)	127, 318
BssT1I	CCWWGG	1 cut(s)	543
Bst2UI	CCWGG	1 cut(s)	120
Bst4CI	ACNGT	1 cut(s)	600
Bst6I	CTCTTC	1 cut(s)	366
BstAPI	GCANNNNNTGC	1 cut(s)	313
BstAUI	TGTACA	1 cut(s)	178
BstBAI	YACGTR	1 cut(s)	494
BstC8I	GCNNGC	4 cut(s)	71, 261, 504, 753
BstDEI	CTNAG	1 cut(s)	303
BstDSI	CCRYGG	1 cut(s)	543
BstF5I	GGATG	5 cut(s)	10, 160, 190, 355, 526
BstH2I	RGCGCY	1 cut(s)	150
BstHHI	GCGC	1 cut(s)	149
BstKTI	GATC	2 cut(s)	130, 321
BstMBI	GATC	2 cut(s)	127, 318
BstMWI	GCNNNNNNNGC	5 cut(s)	66, 313, 434, 460, 701
BstNI	CCWGG	1 cut(s)	120
BstNSI	RCATGY	1 cut(s)	25
BstSCI	CCNGG	1 cut(s)	118
BstSFI	CTRYAG	1 cut(s)	71
BstSLI	GKGCMC	1 cut(s)	430
BstV1I	GCAGC	2 cut(s)	85, 767
BstX2I	RGATCY	1 cut(s)	318
BstYI	RGATCY	1 cut(s)	318
Bsu15I	ATCGAT	1 cut(s)	607
BsuI	GTATCC	2 cut(s)	29, 672
BsuRI	GGCC	5 cut(s)	47, 60, 69, 263, 399
BsuTUI	ATCGAT	1 cut(s)	607
BtgI	CCRYGG	1 cut(s)	543
BtsCI	GGATG	5 cut(s)	10, 160, 190, 355, 526
BtsIMutI	CAGTG	2 cut(s)	605, 799
Cac8I	GCNNGC	4 cut(s)	71, 261, 504, 753
CfoI	GCGC	1 cut(s)	149
Cfr10I	RCCGGY	1 cut(s)	259
Cfr13I	GGNCC	1 cut(s)	398
ClaI	ATCGAT	1 cut(s)	607
Csp6I	GTAC	3 cut(s)	179, 582, 816
CviAII	CATG	7 cut(s)	22, 88, 139, 313, 544, 579, 812
CviQI	GTAC	3 cut(s)	179, 582, 816
DdeI	CTNAG	1 cut(s)	303
DpnI	GATC	2 cut(s)	129, 320
DpnII	GATC	2 cut(s)	127, 318
DraI	TTTAAA	2 cut(s)	55, 733
EaeI	YGGCCR	1 cut(s)	261
Eam1104I	CTCTTC	1 cut(s)	366
EarI	CTCTTC	1 cut(s)	366
Ecl136II	GAGCTC	1 cut(s)	590
Eco130I	CCWWGG	1 cut(s)	543
Eco147I	AGGCCT	1 cut(s)	47
Eco24I	GRGCYC	1 cut(s)	592
Eco32I	GATATC	1 cut(s)	158
Eco53kI	GAGCTC	1 cut(s)	590
Eco57I	CTGAAG	2 cut(s)	279, 780
Eco72I	CACGTG	1 cut(s)	494
Eco88I	CYCGRG	1 cut(s)	165
EcoICRI	GAGCTC	1 cut(s)	590
EcoRII	CCWGG	1 cut(s)	118
EcoRV	GATATC	1 cut(s)	158
EcoT14I	CCWWGG	1 cut(s)	543
EcoT22I	ATGCAT	1 cut(s)	343
EcoT38I	GRGCYC	1 cut(s)	592
ErhI	CCWWGG	1 cut(s)	543
FaeI	CATG	7 cut(s)	25, 91, 142, 316, 547, 582, 815
FalI	AAGNNNNNCTT	2 cut(s)	48, 80
FatI	CATG	7 cut(s)	21, 87, 138, 312, 543, 578, 811
FauI	CCCGC	2 cut(s)	511, 681
Fnu4HI	GCNGC	2 cut(s)	74, 756
FokI	GGATG	5 cut(s)	17, 147, 197, 362, 533
FriOI	GRGCYC	1 cut(s)	592
Fsp4HI	GCNGC	2 cut(s)	74, 756
FspBI	CTAG	1 cut(s)	696
GlaI	GCGC	1 cut(s)	148
GluI	GCNGC	2 cut(s)	74, 756
GsuI	CTGGAG	1 cut(s)	606
HaeII	RGCGCY	1 cut(s)	150
HaeIII	GGCC	5 cut(s)	47, 60, 69, 263, 399
HapII	CCGG	3 cut(s)	134, 260, 287
HhaI	GCGC	1 cut(s)	149
Hin1II	CATG	7 cut(s)	25, 91, 142, 316, 547, 582, 815
Hin6I	GCGC	1 cut(s)	147
HinP1I	GCGC	1 cut(s)	147
HindIII	AAGCTT	1 cut(s)	749
HinfI	GANTC	3 cut(s)	11, 718, 796
HpaII	CCGG	3 cut(s)	134, 260, 287
HphI	GGTGA	3 cut(s)	104, 370, 457
Hpy188III	TCNNGA	3 cut(s)	167, 287, 335
HpyAV	CCTTC	3 cut(s)	386, 411, 755
HpyCH4III	ACNGT	1 cut(s)	600
HpyCH4IV	ACGT	1 cut(s)	493
HpyCH4V	TGCA	5 cut(s)	73, 316, 341, 642, 755
HpyF10VI	GCNNNNNNNGC	5 cut(s)	66, 313, 434, 460, 701
HpyF3I	CTNAG	1 cut(s)	303
HpySE526I	ACGT	1 cut(s)	493
Hsp92II	CATG	7 cut(s)	25, 91, 142, 316, 547, 582, 815
HspAI	GCGC	1 cut(s)	147
Kpn2I	TCCGGA	1 cut(s)	286
KroI	GCCGGC	1 cut(s)	259
KroNI	GCCGGC	1 cut(s)	261
Kzo9I	GATC	2 cut(s)	127, 318
LguI	GCTCTTC	1 cut(s)	366
LmnI	GCTCC	3 cut(s)	193, 587, 595
Lsp1109I	GCAGC	2 cut(s)	85, 767
LweI	GCATC	4 cut(s)	175, 246, 328, 350
MaeI	CTAG	1 cut(s)	696
MaeII	ACGT	1 cut(s)	493
MaeIII	GTNAC	2 cut(s)	98, 829
MalI	GATC	2 cut(s)	129, 320
MboI	GATC	2 cut(s)	127, 318
MboII	GAAGA	4 cut(s)	275, 383, 460, 720
MfeI	CAATTG	2 cut(s)	28, 783
MflI	RGATCY	1 cut(s)	318
MhlI	GDGCHC	3 cut(s)	430, 592, 680
MluCI	AATT	4 cut(s)	28, 271, 564, 783
MlyI	GAGTC	2 cut(s)	727, 790
MmeI	TCCRAC	1 cut(s)	203
Mph1103I	ATGCAT	1 cut(s)	343
MroI	TCCGGA	1 cut(s)	286
MroNI	GCCGGC	1 cut(s)	259
MseI	TTAA	3 cut(s)	54, 228, 732
MslI	CAYNNNNRTG	1 cut(s)	254
MspA1I	CMGCKG	1 cut(s)	758
MspI	CCGG	3 cut(s)	134, 260, 287
MspR9I	CCNGG	1 cut(s)	120
MunI	CAATTG	2 cut(s)	28, 783
Mva1269I	GAATGC	1 cut(s)	558
MvaI	CCWGG	1 cut(s)	120
MwoI	GCNNNNNNNGC	5 cut(s)	66, 313, 434, 460, 701
NaeI	GCCGGC	1 cut(s)	261
NcoI	CCATGG	1 cut(s)	543
NdeII	GATC	2 cut(s)	127, 318
NgoMIV	GCCGGC	1 cut(s)	259
NlaIII	CATG	7 cut(s)	25, 91, 142, 316, 547, 582, 815
NlaIV	GGNNCC	2 cut(s)	427, 489
NmeAIII	GCCGAG	1 cut(s)	480
NmuCI	GTSAC	2 cut(s)	98, 829
NsiI	ATGCAT	1 cut(s)	343
NspI	RCATGY	1 cut(s)	25
PceI	AGGCCT	1 cut(s)	47
PciSI	GCTCTTC	1 cut(s)	366
PctI	GAATGC	1 cut(s)	558
PdiI	GCCGGC	1 cut(s)	261
PfeI	GAWTC	1 cut(s)	11
PkrI	GCNGC	2 cut(s)	75, 757
PleI	GAGTC	2 cut(s)	726, 790
PmaCI	CACGTG	1 cut(s)	494
PmlI	CACGTG	1 cut(s)	494
PpsI	GAGTC	2 cut(s)	726, 790
Ppu21I	YACGTR	1 cut(s)	494
PsiI	TTATAA	1 cut(s)	768
Psp124BI	GAGCTC	1 cut(s)	592
Psp6I	CCWGG	1 cut(s)	118
PspCI	CACGTG	1 cut(s)	494
PspGI	CCWGG	1 cut(s)	118
PspN4I	GGNNCC	2 cut(s)	427, 489
PspPI	GGNCC	1 cut(s)	398
PstI	CTGCAG	1 cut(s)	75
PsuI	RGATCY	1 cut(s)	318
PvuII	CAGCTG	1 cut(s)	758
RsaI	GTAC	3 cut(s)	180, 583, 817
RsaNI	GTAC	3 cut(s)	179, 582, 816
RseI	CAYNNNNRTG	1 cut(s)	254
SacI	GAGCTC	1 cut(s)	592
SapI	GCTCTTC	1 cut(s)	366
SaqAI	TTAA	3 cut(s)	54, 228, 732
SatI	GCNGC	2 cut(s)	74, 756
Sau3AI	GATC	2 cut(s)	127, 318
Sau96I	GGNCC	1 cut(s)	398
SchI	GAGTC	2 cut(s)	727, 790
ScrFI	CCNGG	1 cut(s)	120
SduI	GDGCHC	3 cut(s)	430, 592, 680
SfaNI	GCATC	4 cut(s)	175, 246, 328, 350
SfcI	CTRYAG	1 cut(s)	71
SfiI	GGCCNNNNNGGCC	1 cut(s)	66
SmiMI	CAYNNNNRTG	1 cut(s)	254
Sse9I	AATT	4 cut(s)	28, 271, 564, 783
SseBI	AGGCCT	1 cut(s)	47
SsiI	CCGC	4 cut(s)	485, 504, 633, 688
SspMI	CTAG	1 cut(s)	696
SstI	GAGCTC	1 cut(s)	592
StuI	AGGCCT	1 cut(s)	47
StyD4I	CCNGG	1 cut(s)	118
StyI	CCWWGG	1 cut(s)	543
TaaI	ACNGT	1 cut(s)	600
TaiI	ACGT	1 cut(s)	496
TaqI	TCGA	1 cut(s)	607
TasI	AATT	4 cut(s)	28, 271, 564, 783
TatI	WGTACW	2 cut(s)	178, 581
TfiI	GAWTC	1 cut(s)	11
Tru1I	TTAA	3 cut(s)	54, 228, 732
Tru9I	TTAA	3 cut(s)	54, 228, 732
TscAI	CASTG	2 cut(s)	605, 806
TseFI	GTSAC	2 cut(s)	98, 829
TseI	GCWGC	2 cut(s)	73, 755
Tsp45I	GTSAC	2 cut(s)	98, 829
TspRI	CASTG	2 cut(s)	605, 806
XceI	RCATGY	1 cut(s)	25
XcmI	CCANNNNNNNNNTGG	1 cut(s)	392
XspI	CTAG	1 cut(s)	696
Zsp2I	ATGCAT	1 cut(s)	343

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.