Rh2CG317900

Transcription factor VOZ1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0001263
Physical Location & Seq
Forward (+)
40715663 .. 40718592
2930 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG317900.1

Sequence Viewer

Length: 1410 bp
ATGATCAAGGACTCCAAGGGCAAGTGTGAGTCGTCGTCTCACAAGCTCTTGAAAGAAAAAGCAAAGACTCGCGTGGACTACCTTCAAGCTTTTCTGACCAATCTCAAGAGTGCGACGAAGGAGAACCGGACTGATGACAATGCAACCTTGGAGGAAGCGAATAAGATGCTTCAGGAGTGGAAAGCTGAGCTCAATGAGCCGTCTCCTGCGTCTTCTCTACTAGCTGATAGTCTGGGATCGTTTTCAGAGGAGTTAGCACGTCTCTTGAGAACTGATGAGGAGGATGATGCAACAAGTCCATTAAAGGAATTGCTACCTACTAAGCCAGAGAGCGATCTTCAAAACCTTCATTTGGGTAATTTGGTGCAATTTACAGAGGATTTTTATGTTTCTCCGGAGCCACAAGAAACTTTTCAAGAATTTTTTCAATGCGGAGATACTGCTTCAGGTTTCCAGAATCTAATGGTCGATAACTCTGGTTTTGATCATCACTTTGATTTTCATCAATATGTCAATGAAGGGCCATTCATTGGGGGGAATGATGTGAAACAGCCTGAAGAGGATGCTGCGCCAAGTGTTTTGCCAGTTATCTCTCCATTCATTGGGGGGAATGATGTGAAACAGCCTGAAGAGGATGCTGCGCCAAGTGTTTTGCCAGTTATCTCTCCTACAGAACCTTCTTTTTTGGGGCCAACATGTGCTCTTTGGGATTGTTCCAGGCCTGCAGAATGTGGAAAGGACTATTGCTGTAACTTTCATGCTACATCAGCATTAGAAGAGGGTCAACCTGGAAAATCTCCAGTTTTTCGTCCTCGTGGCATTTCTTTAAAGGATAATGCACTTTTTGATGCACTTATTGCTTGGAATCAGGGAAAAGCTGTGGGCATACCCAATTGTGAAGGGGCAGCTACTCTAAAATCTCCATGGAATGACTCTAAGCTATTCAATCTTTCTTTCCTTGAGGGTGAAACAGTTAGAGAGTGGCTCTTTTTTGATAAGCCTAGAAGGGCCTTTGGGACTGGAAACAGAAGGCAGAGGTCATTGCCAGATCACAGTGGACGTGGTTGGCATGAATCAAGAAAGCAGATCATGAAGGAATTTGATGGGCAGAAAAGGTCCTATTATATGGATCCACAGCCCTCAATTGATCAGGACTGGCATTTGTTTGAATATGAGGTCAACAATTCTGATGCCTGTGCTCTATATAGGTTGGAGTTAAAGTTTGGCAGTGTAAAGAAAAGTCCAAAAGGAAAAGTATCAAATGAGGTTGCTGATCTGCAAAAGAAGATGGGAAAGCTCACTGCTGAGGTTGCCACTGATGGTGCAAACAATGCCAAAGGGAAAACTAAGAAAAAGGCTGATGCTGGCAATATTTTTTCTTCTCAAAGTCCGATGAATTCAACTCCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

469

Amino Acids

52.13

Weight (kDa)

5.18

Isoelectric Point (pI)

56.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 530, 602
AccII CGCG 1 cut(s) 72
AccIII TCCGGA 1 cut(s) 394
AciI CCGC 1 cut(s) 432
AclWI GGATC 3 cut(s) 244, 1124, 1137
AcsI RAATTY 3 cut(s) 419, 1097, 1396
AcuI CTGAAG 4 cut(s) 155, 429, 576, 648
AfiI CCNNNNNNNGG 3 cut(s) 352, 530, 602
AflIII ACRYGT 1 cut(s) 695
AgsI TTSAA 8 cut(s) 52, 86, 341, 416, 428, 946, 1169, 1401
AjiI CACGTC 2 cut(s) 260, 1061
AjnI CCWGG 2 cut(s) 716, 787
AluBI AGCT 9 cut(s) 46, 89, 185, 190, 224, 878, 908, 940, 1297
AluI AGCT 9 cut(s) 46, 89, 185, 190, 224, 878, 908, 940, 1297
Alw21I GWGCWC 3 cut(s) 192, 703, 1201
Alw26I GTCTC 3 cut(s) 42, 207, 266
AlwI GGATC 3 cut(s) 244, 1124, 1137
Aor13HI TCCGGA 1 cut(s) 394
AoxI GGCC 4 cut(s) 521, 689, 719, 1008
ApeKI GCWGC 3 cut(s) 566, 638, 905
ApoI RAATTY 3 cut(s) 419, 1097, 1396
Asp700I GAANNNNTTC 2 cut(s) 411, 423
AspLEI GCGC 2 cut(s) 571, 643
AspS9I GGNCC 4 cut(s) 521, 689, 1008, 1116
AsuHPI GGTGA 1 cut(s) 977
AvaII GGWCC 1 cut(s) 1116
BamHI GGATCC 1 cut(s) 1129
BanII GRGCYC 1 cut(s) 192
BauI CACGAG 1 cut(s) 813
BbsI GAAGAC 1 cut(s) 204
Bbv12I GWGCWC 3 cut(s) 192, 703, 1201
BbvCI CCTCAGC 1 cut(s) 1305
BbvI GCAGC 3 cut(s) 553, 625, 917
BccI CCATC 3 cut(s) 1097, 1282, 1313
BceAI ACGGC 1 cut(s) 184
BcgI CGANNNNNNTGC 2 cut(s) 148, 182
BciT130I CCWGG 2 cut(s) 718, 789
BclI TGATCA 3 cut(s) 3, 484, 1147
BcoDI GTCTC 3 cut(s) 42, 207, 266
BfaI CTAG 2 cut(s) 221, 1002
BfmI CTRYAG 2 cut(s) 669, 723
BisI GCNGC 3 cut(s) 567, 639, 906
BlpI GCTNAGC 1 cut(s) 186
BlsI GCNGC 3 cut(s) 568, 640, 907
Bme1390I CCNGG 2 cut(s) 718, 789
Bme18I GGWCC 1 cut(s) 1116
BmgBI CACGTC 2 cut(s) 260, 1061
BmgT120I GGNCC 4 cut(s) 521, 689, 1008, 1116
BmiI GGNNCC 3 cut(s) 399, 690, 1131
BmrFI CCNGG 2 cut(s) 718, 789
BmsI GCATC 7 cut(s) 156, 277, 553, 625, 838, 1180, 1351
BpiI GAAGAC 1 cut(s) 204
BplI GAGNNNNNCTC 2 cut(s) 969, 1001
BpmI CTGGAG 1 cut(s) 783
Bpu10I CCTNAGC 1 cut(s) 1305
Bpu1102I GCTNAGC 1 cut(s) 186
BpuEI CTTGAG 3 cut(s) 89, 286, 980
BsaBI GATNNNNATC 1 cut(s) 501
BsaJI CCNNGG 3 cut(s) 15, 147, 923
BsaWI WCCGGW 2 cut(s) 126, 394
BsaXI ACNNNNNCTCC 2 cut(s) 1205, 1235
Bsc4I CCNNNNNNNGG 3 cut(s) 352, 530, 602
Bse1I ACTGG 5 cut(s) 584, 656, 800, 1024, 1160
Bse3DI GCAATG 1 cut(s) 1040
Bse8I GATNNNNATC 1 cut(s) 501
BseAI TCCGGA 1 cut(s) 394
BseBI CCWGG 2 cut(s) 718, 789
BseDI CCNNGG 3 cut(s) 15, 147, 923
BseGI GGATG 3 cut(s) 289, 568, 640
BseJI GATNNNNATC 1 cut(s) 501
BseLI CCNNNNNNNGG 3 cut(s) 352, 530, 602
BseMI GCAATG 1 cut(s) 1040
BseMII CTCAG 2 cut(s) 177, 1296
BseNI ACTGG 5 cut(s) 584, 656, 800, 1024, 1160
BseRI GAGGAG 2 cut(s) 263, 293
BseXI GCAGC 3 cut(s) 553, 625, 917
Bsh1236I CGCG 1 cut(s) 72
BshFI GGCC 4 cut(s) 523, 691, 721, 1010
BsiHKAI GWGCWC 3 cut(s) 192, 703, 1201
BsiSI CCGG 2 cut(s) 127, 395
BslFI GGGAC 1 cut(s) 1030
BslI CCNNNNNNNGG 3 cut(s) 352, 530, 602
BsmAI GTCTC 3 cut(s) 42, 207, 266
BsmBI CGTCTC 3 cut(s) 42, 207, 266
BsmFI GGGAC 1 cut(s) 1030
BsnI GGCC 4 cut(s) 523, 691, 721, 1010
Bsp1286I GDGCHC 3 cut(s) 192, 703, 1201
Bsp13I TCCGGA 1 cut(s) 394
Bsp143I GATC 9 cut(s) 3, 236, 334, 484, 1048, 1086, 1129, 1147, 1273
Bsp1720I GCTNAGC 1 cut(s) 186
Bsp19I CCATGG 1 cut(s) 923
BspACI CCGC 1 cut(s) 432
BspANI GGCC 4 cut(s) 523, 691, 721, 1010
BspCNI CTCAG 2 cut(s) 178, 1297
BspEI TCCGGA 1 cut(s) 394
BspFNI CGCG 1 cut(s) 72
BspHI TCATGA 1 cut(s) 1089
BspLI GGNNCC 3 cut(s) 399, 690, 1131
BspMAI CTGCAG 1 cut(s) 727
BspPI GGATC 3 cut(s) 244, 1124, 1137
BsrDI GCAATG 1 cut(s) 1040
BsrI ACTGG 5 cut(s) 584, 656, 800, 1024, 1160
BssECI CCNNGG 3 cut(s) 15, 147, 923
BssMI GATC 9 cut(s) 3, 236, 334, 484, 1048, 1086, 1129, 1147, 1273
BssSI CACGAG 1 cut(s) 813
BssT1I CCWWGG 3 cut(s) 15, 147, 923
Bst2BI CACGAG 1 cut(s) 813
Bst2UI CCWGG 2 cut(s) 718, 789
Bst4CI ACNGT 2 cut(s) 973, 1055
Bst6I CTCTTC 3 cut(s) 552, 624, 771
BstAPI GCANNNNNTGC 2 cut(s) 857, 1331
BstC8I GCNNGC 2 cut(s) 723, 1366
BstDEI CTNAG 5 cut(s) 186, 321, 936, 1305, 1347
BstDSI CCRYGG 1 cut(s) 923
BstF5I GGATG 3 cut(s) 289, 568, 640
BstFNI CGCG 1 cut(s) 72
BstHHI GCGC 2 cut(s) 571, 643
BstKTI GATC 9 cut(s) 6, 239, 337, 487, 1051, 1089, 1132, 1150, 1276
BstMAI GTCTC 3 cut(s) 42, 207, 266
BstMBI GATC 9 cut(s) 3, 236, 334, 484, 1048, 1086, 1129, 1147, 1273
BstMWI GCNNNNNNNGC 5 cut(s) 196, 767, 857, 1310, 1331
BstNI CCWGG 2 cut(s) 718, 789
BstNSI RCATGY 1 cut(s) 699
BstSCI CCNGG 2 cut(s) 716, 787
BstSFI CTRYAG 2 cut(s) 669, 723
BstUI CGCG 1 cut(s) 72
BstV1I GCAGC 3 cut(s) 553, 625, 917
BstV2I GAAGAC 1 cut(s) 204
BstX2I RGATCY 1 cut(s) 1129
BstYI RGATCY 1 cut(s) 1129
BsuRI GGCC 4 cut(s) 523, 691, 721, 1010
BtgI CCRYGG 1 cut(s) 923
BtrI CACGTC 2 cut(s) 260, 1061
BtsCI GGATG 3 cut(s) 289, 568, 640
BtsI GCAGTG 2 cut(s) 1234, 1299
BtsIMutI CAGTG 4 cut(s) 1060, 1234, 1299, 1314
Cac8I GCNNGC 2 cut(s) 723, 1366
CciI TCATGA 1 cut(s) 1089
CfoI GCGC 2 cut(s) 571, 643
Cfr13I GGNCC 4 cut(s) 521, 689, 1008, 1116
CseI GACGC 1 cut(s) 198
CviAII CATG 5 cut(s) 696, 758, 924, 1070, 1090
DdeI CTNAG 5 cut(s) 186, 321, 936, 1305, 1347
DpnI GATC 9 cut(s) 5, 238, 336, 486, 1050, 1088, 1131, 1149, 1275
DpnII GATC 9 cut(s) 3, 236, 334, 484, 1048, 1086, 1129, 1147, 1273
DraI TTTAAA 1 cut(s) 828
Eam1104I CTCTTC 3 cut(s) 552, 624, 771
EarI CTCTTC 3 cut(s) 552, 624, 771
Ecl136II GAGCTC 1 cut(s) 190
Eco130I CCWWGG 3 cut(s) 15, 147, 923
Eco147I AGGCCT 1 cut(s) 721
Eco24I GRGCYC 1 cut(s) 192
Eco47I GGWCC 1 cut(s) 1116
Eco53kI GAGCTC 1 cut(s) 190
Eco57I CTGAAG 4 cut(s) 155, 429, 576, 648
EcoICRI GAGCTC 1 cut(s) 190
EcoO109I RGGNCCY 2 cut(s) 1008, 1116
EcoRI GAATTC 1 cut(s) 1396
EcoRII CCWGG 2 cut(s) 716, 787
EcoT14I CCWWGG 3 cut(s) 15, 147, 923
EcoT38I GRGCYC 1 cut(s) 192
ErhI CCWWGG 3 cut(s) 15, 147, 923
Esp3I CGTCTC 3 cut(s) 42, 207, 266
FaeI CATG 5 cut(s) 699, 761, 927, 1073, 1093
FaqI GGGAC 1 cut(s) 1030
FatI CATG 5 cut(s) 695, 757, 923, 1069, 1089
FbaI TGATCA 3 cut(s) 3, 484, 1147
Fnu4HI GCNGC 3 cut(s) 567, 639, 906
FokI GGATG 3 cut(s) 296, 575, 647
FriOI GRGCYC 1 cut(s) 192
Fsp4HI GCNGC 3 cut(s) 567, 639, 906
FspBI CTAG 2 cut(s) 221, 1002
GlaI GCGC 2 cut(s) 570, 642
GluI GCNGC 3 cut(s) 567, 639, 906
GsuI CTGGAG 1 cut(s) 783
HaeIII GGCC 4 cut(s) 523, 691, 721, 1010
HapII CCGG 2 cut(s) 127, 395
HgaI GACGC 1 cut(s) 198
HhaI GCGC 2 cut(s) 571, 643
Hin1II CATG 5 cut(s) 699, 761, 927, 1073, 1093
Hin6I GCGC 2 cut(s) 569, 641
HinP1I GCGC 2 cut(s) 569, 641
HincII GTYRAC 2 cut(s) 785, 1180
HindII GTYRAC 2 cut(s) 785, 1180
HindIII AAGCTT 1 cut(s) 87
HinfI GANTC 7 cut(s) 11, 29, 67, 457, 865, 932, 1073
HpaII CCGG 2 cut(s) 127, 395
HphI GGTGA 1 cut(s) 977
Hpy166II GTNNAC 4 cut(s) 76, 785, 1058, 1180
Hpy188I TCNGA 4 cut(s) 96, 247, 1189, 1392
Hpy8I GTNNAC 4 cut(s) 76, 785, 1058, 1180
Hpy99I CGWCG 2 cut(s) 37, 118
HpyAV CCTTC 9 cut(s) 92, 112, 356, 512, 687, 893, 999, 1023, 1087
HpyCH4III ACNGT 2 cut(s) 973, 1055
HpyCH4IV ACGT 2 cut(s) 259, 1060
HpyCH4V TGCA 8 cut(s) 143, 290, 367, 725, 839, 851, 1279, 1325
HpyF10VI GCNNNNNNNGC 5 cut(s) 196, 767, 857, 1310, 1331
HpyF3I CTNAG 5 cut(s) 186, 321, 936, 1305, 1347
HpySE526I ACGT 2 cut(s) 259, 1060
Hsp92II CATG 5 cut(s) 699, 761, 927, 1073, 1093
HspAI GCGC 2 cut(s) 569, 641
Kpn2I TCCGGA 1 cut(s) 394
Ksp22I TGATCA 3 cut(s) 3, 484, 1147
Kzo9I GATC 9 cut(s) 3, 236, 334, 484, 1048, 1086, 1129, 1147, 1273
LmnI GCTCC 1 cut(s) 397
Lsp1109I GCAGC 3 cut(s) 553, 625, 917
LweI GCATC 7 cut(s) 156, 277, 553, 625, 838, 1180, 1351
MaeI CTAG 2 cut(s) 221, 1002
MaeII ACGT 2 cut(s) 259, 1060
MaeIII GTNAC 1 cut(s) 749
MalI GATC 9 cut(s) 5, 238, 336, 486, 1050, 1088, 1131, 1149, 1275
MboI GATC 9 cut(s) 3, 236, 334, 484, 1048, 1086, 1129, 1147, 1273
MboII GAAGA 7 cut(s) 204, 329, 569, 641, 788, 1297, 1371
MfeI CAATTG 2 cut(s) 892, 1143
MflI RGATCY 1 cut(s) 1129
MhlI GDGCHC 3 cut(s) 192, 703, 1201
MluCI AATT 9 cut(s) 308, 358, 368, 419, 892, 1097, 1143, 1183, 1396
MlyI GAGTC 4 cut(s) 5, 38, 61, 926
MmeI TCCRAC 1 cut(s) 1191
MroI TCCGGA 1 cut(s) 394
MroXI GAANNNNTTC 2 cut(s) 411, 423
MseI TTAA 3 cut(s) 302, 827, 1217
MslI CAYNNNNRTG 1 cut(s) 507
MspI CCGG 2 cut(s) 127, 395
MspR9I CCNGG 2 cut(s) 718, 789
MunI CAATTG 2 cut(s) 892, 1143
MvaI CCWGG 2 cut(s) 718, 789
MvnI CGCG 1 cut(s) 72
MwoI GCNNNNNNNGC 5 cut(s) 196, 767, 857, 1310, 1331
NcoI CCATGG 1 cut(s) 923
NdeII GATC 9 cut(s) 3, 236, 334, 484, 1048, 1086, 1129, 1147, 1273
NlaIII CATG 5 cut(s) 699, 761, 927, 1073, 1093
NlaIV GGNNCC 3 cut(s) 399, 690, 1131
NspI RCATGY 1 cut(s) 699
PagI TCATGA 1 cut(s) 1089
PceI AGGCCT 1 cut(s) 721
PciI ACATGT 1 cut(s) 695
PdmI GAANNNNTTC 2 cut(s) 411, 423
PfeI GAWTC 3 cut(s) 457, 865, 1073
PflMI CCANNNNNTGG 2 cut(s) 530, 602
PkrI GCNGC 3 cut(s) 568, 640, 907
PleI GAGTC 4 cut(s) 5, 37, 61, 926
PpsI GAGTC 4 cut(s) 5, 37, 61, 926
PpuMI RGGWCCY 1 cut(s) 1116
PscI ACATGT 1 cut(s) 695
Psp124BI GAGCTC 1 cut(s) 192
Psp5II RGGWCCY 1 cut(s) 1116
Psp6I CCWGG 2 cut(s) 716, 787
PspGI CCWGG 2 cut(s) 716, 787
PspN4I GGNNCC 3 cut(s) 399, 690, 1131
PspPI GGNCC 4 cut(s) 521, 689, 1008, 1116
PspPPI RGGWCCY 1 cut(s) 1116
PstI CTGCAG 1 cut(s) 727
PsuI RGATCY 1 cut(s) 1129
RseI CAYNNNNRTG 1 cut(s) 507
SacI GAGCTC 1 cut(s) 192
SaqAI TTAA 3 cut(s) 302, 827, 1217
SatI GCNGC 3 cut(s) 567, 639, 906
Sau3AI GATC 9 cut(s) 3, 236, 334, 484, 1048, 1086, 1129, 1147, 1273
Sau96I GGNCC 4 cut(s) 521, 689, 1008, 1116
SchI GAGTC 4 cut(s) 5, 38, 61, 926
ScrFI CCNGG 2 cut(s) 718, 789
SduI GDGCHC 3 cut(s) 192, 703, 1201
SfaNI GCATC 7 cut(s) 156, 277, 553, 625, 838, 1180, 1351
SfcI CTRYAG 2 cut(s) 669, 723
SinI GGWCC 1 cut(s) 1116
SmiMI CAYNNNNRTG 1 cut(s) 507
SmlI CTYRAG 3 cut(s) 104, 265, 959
SmoI CTYRAG 3 cut(s) 104, 265, 959
Sse9I AATT 9 cut(s) 308, 358, 368, 419, 892, 1097, 1143, 1183, 1396
SseBI AGGCCT 1 cut(s) 721
SsiI CCGC 1 cut(s) 432
SspI AATATT 1 cut(s) 1372
SspMI CTAG 2 cut(s) 221, 1002
SstI GAGCTC 1 cut(s) 192
StuI AGGCCT 1 cut(s) 721
StyD4I CCNGG 2 cut(s) 716, 787
StyI CCWWGG 3 cut(s) 15, 147, 923
TaaI ACNGT 2 cut(s) 973, 1055
TaiI ACGT 2 cut(s) 262, 1063
TaqI TCGA 1 cut(s) 468
TasI AATT 9 cut(s) 308, 358, 368, 419, 892, 1097, 1143, 1183, 1396
TfiI GAWTC 3 cut(s) 457, 865, 1073
Tru1I TTAA 3 cut(s) 302, 827, 1217
Tru9I TTAA 3 cut(s) 302, 827, 1217
TscAI CASTG 4 cut(s) 1060, 1234, 1306, 1321
TseI GCWGC 3 cut(s) 566, 638, 905
TspDTI ATGAA 9 cut(s) 338, 491, 517, 531, 589, 746, 1086, 1106, 1409
TspRI CASTG 4 cut(s) 1060, 1234, 1306, 1321
Van91I CCANNNNNTGG 2 cut(s) 530, 602
VpaK11BI GGWCC 1 cut(s) 1116
XapI RAATTY 3 cut(s) 419, 1097, 1396
XceI RCATGY 1 cut(s) 699
XmnI GAANNNNTTC 2 cut(s) 411, 423
XspI CTAG 2 cut(s) 221, 1002
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.