Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0001263

Physical Location & Seq

Genomic Coordinates Reverse (-)

11877499 .. 11882001

Gene Structure 4503 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G127200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1368 bp

ATGCTCAAGGGCTCCAAGGGCAAGTGTGAGTCTCCATCTCACAAGCTCTTGAAGGAAAAAACAAAGACTCGATTGGAAGACCTTCAAGGGATGCTCACCAATGTTCAGGCTGCCAAGAAAGAGAGTGGAACTGATGACATTGTAATCTTGATGGAACAAGCGAATCAGATGGTTCGGGAGTGGAGGGCCGAACTCAATGAGCCGTCCCCAGCATCTTCTCTACTGGGAGGTAGCCTTGGATCATTTTGCGAGGAGGAGTTAGCTCGGGTCTTGAAACACTTAGATGAGGAAGATGATGCAACAAGTCAGTTAAAGCAATTGCCACCATCTATGCCAGAATCCGATCTTCTAAACCTTCATTCGAGTAATATGTTGGCATTTAAAGAGGAATTTTTTGTTTCTAAGGAACCTGAAGAAGATATATTTCAAGGATTTGACCAATGCTACACTGCTTCCAATTTGCAGAATACAATGGTTGATAACTCAGATTTAACTACTCAATTAAAATATCATCACTTTGATTTTCATGAAGACTTAGATGAAGGGCTTTTCATTGAGGGCAACAATATCACGCAGTCTGAAGAGGATGTTGTGCCAAATGTTCTGCCAGATATATGTCCTCCAGTATCTGCTTTCTTGGGGCCAAAATGTGCTTTTTGGGAGTGTTCCAGGCCTGCATCAAATAGGTGCCAGAACTTTTGCAGTAGTGGTCATGCTCTTTTGGCACTAAATGAAGGTCTTCTTGGAAGGCCTCCAATTTTGCGACCTGGAGGCATTGCTTTGAAGGATAGTTCACTTTTTGCCGCACTTAATGCTAAGACACAGGGGAAGGATGTGGGAATCCCCAATTGTGAAGGGGCTGCTACTCTAAAATGTCCATGGAATGCTCCTGAGCTATTTGATCTTTCCTTTCTTGATGGTGAAACGATTAGGGAGTGGCTTTTTTTTGGCAAGCCTAGAAGGGCCTTTGAGAGTGGAAATAGAAAGCAGAGGTCATTGCCAGACTATAATGGGCGTGGTTGGCATGAATCAAGAAAACAGGTTATGAAGGAATTTGGGGGGCACAAAAGGTCCTATTATATGGACCCACAGCCTTCAAGCGATAGAGAGTGGCATTTGTTTGAATATGAGGTCAACAACTCAGATGCCTGTGCACTATATAGGTTGGAGCTCAAGTTTGGCAGTGCAAAGAAAAGTTCCAAAGGAAAAGTATCAAGTGATCCGCTTGCTGATCTGCAGAAGAAGATGGGAAGGCTCACTGCAGAGGTTCCTACAGATGATGCAAGCAATGTTAAGGGGAAAGCTAGCACAAAGGCTGATGCTGGAAATATTTTTTCTTCTCATAATCAGACAACATCAACTACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

456

Amino Acids

50.63

Weight (kDa)

5.38

Isoelectric Point (pI)

48.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001263)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28520 AT1G28520 AT1G28520 AT1G28520 AT1G28520
fragaria_vesca	FvH4_3g08390 FvH4_3g08390 FvH4_3g08390 FvH4_3g08390 FvH4_3g08390 FvH4_3g08390 FvH4_6g26850 FvH4_6g26850 FvH4_6g26850 FvH4_6g26850 FvH4_6g26850 FvH4_6g26850 FvH4_6g26850
malus_domestica	MD05G1308300.v1.1 MD10G1287300.v1.1 MD17G1234200.v1.1
prunus_persica	Prupe.3G127200_v2.0.a1 Prupe.3G127200_v2.0.a1 Prupe.3G127200_v2.0.a1 Prupe.4G054500_v2.0.a1 Prupe.4G054500_v2.0.a1
pyrus_communis	pycom05g28500 pycom10g24030 pycom17g23750
rosa_chinensis	RchiOBHm_Chr2g0128221 RchiOBHm_Chr5g0009511
rosa_laevigata	RLG00000018998 RLG00000031668
rosa_multiflora	Rmu_sc0000837.1_g000011 Rmu_sc0002711.1_g000012 Rmu_sc0003465.1_g000003
rosa_roxburghii	Rroxscaffold_1G00066620 Rroxscaffold_1G00067320 Rroxscaffold_2G00115480 Rroxscaffold_2G00115940
rosa_rugosa	Rorug02G0278700 Rorug04G0443800 Rorug04G0443800 Rorug04G0443900 Rorug04G0444000
rosa_samantha	Rh2AG331400 Rh2BG339600 Rh2CG317900 Rh2DG356500 Rh5AG074800 Rh5BG070600 Rh5CG083000 Rh5DG070800
rosa_wichuraiana	Rw2G026810 Rw5G006930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	687
AciI	CCGC	2 cut(s)	804, 1223
AclWI	GGATC	2 cut(s)	247, 1214
AcsI	RAATTY	2 cut(s)	389, 1052
AcuI	CTGAAG	2 cut(s)	432, 600
AgsI	TTSAA	7 cut(s)	52, 86, 274, 428, 784, 1098, 1124
AjnI	CCWGG	2 cut(s)	668, 766
AjuI	GAANNNNNNNTTGG	2 cut(s)	726, 758
AluBI	AGCT	5 cut(s)	46, 263, 895, 1171, 1304
AluI	AGCT	5 cut(s)	46, 263, 895, 1171, 1304
Alw21I	GWGCWC	2 cut(s)	1156, 1173
Alw26I	GTCTC	1 cut(s)	36
Alw44I	GTGCAC	1 cut(s)	1152
AlwI	GGATC	2 cut(s)	247, 1214
AlwNI	CAGNNNCTG	1 cut(s)	629
Ama87I	CYCGRG	1 cut(s)	264
AoxI	GGCC	5 cut(s)	186, 641, 671, 749, 963
ApaLI	GTGCAC	1 cut(s)	1152
ApeKI	GCWGC	2 cut(s)	110, 860
ApoI	RAATTY	2 cut(s)	389, 1052
Asp700I	GAANNNNTTC	2 cut(s)	81, 738
AspS9I	GGNCC	5 cut(s)	186, 641, 963, 1071, 1084
AsuHPI	GGTGA	2 cut(s)	88, 932
AsuNHI	GCTAGC	1 cut(s)	1304
AvaI	CYCGRG	1 cut(s)	264
AvaII	GGWCC	2 cut(s)	1071, 1084
BaeGI	GKGCMC	2 cut(s)	1065, 1156
BanI	GGYRCC	1 cut(s)	687
BanII	GRGCYC	2 cut(s)	14, 1173
BbsI	GAAGAC	3 cut(s)	84, 537, 731
Bbv12I	GWGCWC	2 cut(s)	1156, 1173
BbvI	GCAGC	2 cut(s)	97, 847
BccI	CCATC	6 cut(s)	43, 145, 163, 334, 911, 1240
BceAI	ACGGC	1 cut(s)	187
BciT130I	CCWGG	2 cut(s)	670, 768
BcoDI	GTCTC	1 cut(s)	36
BfaI	CTAG	2 cut(s)	957, 1305
BfmI	CTRYAG	3 cut(s)	1235, 1260, 1272
BisI	GCNGC	3 cut(s)	111, 804, 861
BlsI	GCNGC	3 cut(s)	112, 805, 862
Bme1390I	CCNGG	2 cut(s)	670, 768
Bme18I	GGWCC	2 cut(s)	1071, 1084
BmeT110I	CYCGRG	1 cut(s)	264
BmgT120I	GGNCC	5 cut(s)	186, 641, 963, 1071, 1084
BmiI	GGNNCC	6 cut(s)	13, 408, 642, 689, 1086, 1269
BmrFI	CCNGG	2 cut(s)	670, 768
BmrI	ACTGGG	1 cut(s)	233
BmsI	GCATC	7 cut(s)	81, 221, 286, 686, 1135, 1270, 1309
BmtI	GCTAGC	1 cut(s)	1308
BmuI	ACTGGG	1 cut(s)	233
BpiI	GAAGAC	3 cut(s)	84, 537, 731
BpmI	CTGGAG	2 cut(s)	606, 789
Bpu10I	CCTNAGC	1 cut(s)	891
BpuEI	CTTGAG	1 cut(s)	1157
BsaJI	CCNNGG	3 cut(s)	15, 235, 878
BsaXI	ACNNNNNCTCC	2 cut(s)	1160, 1190
Bse1I	ACTGG	2 cut(s)	228, 623
Bse3DI	GCAATG	3 cut(s)	774, 995, 1294
BseBI	CCWGG	2 cut(s)	670, 768
BseDI	CCNNGG	3 cut(s)	15, 235, 878
BseGI	GGATG	3 cut(s)	96, 592, 838
BseMI	GCAATG	3 cut(s)	774, 995, 1294
BseMII	CTCAG	3 cut(s)	498, 882, 1155
BseNI	ACTGG	2 cut(s)	228, 623
BseRI	GAGGAG	2 cut(s)	266, 269
BseSI	GKGCMC	2 cut(s)	1065, 1156
BseXI	GCAGC	2 cut(s)	97, 847
BseYI	CCCAGC	1 cut(s)	208
BshFI	GGCC	5 cut(s)	188, 643, 673, 751, 965
BshNI	GGYRCC	1 cut(s)	687
BsiHKAI	GWGCWC	2 cut(s)	1156, 1173
BsiHKCI	CYCGRG	1 cut(s)	264
BslFI	GGGAC	1 cut(s)	190
BsmAI	GTCTC	1 cut(s)	36
BsmFI	GGGAC	1 cut(s)	190
BsmI	GAATGC	1 cut(s)	889
BsnI	GGCC	5 cut(s)	188, 643, 673, 751, 965
BsoBI	CYCGRG	1 cut(s)	264
Bsp1286I	GDGCHC	4 cut(s)	14, 1065, 1156, 1173
Bsp143I	GATC	5 cut(s)	239, 343, 901, 1219, 1231
Bsp19I	CCATGG	1 cut(s)	878
BspACI	CCGC	2 cut(s)	804, 1223
BspANI	GGCC	5 cut(s)	188, 643, 673, 751, 965
BspCNI	CTCAG	3 cut(s)	497, 883, 1154
BspHI	TCATGA	1 cut(s)	526
BspLI	GGNNCC	6 cut(s)	13, 408, 642, 689, 1086, 1269
BspMAI	CTGCAG	2 cut(s)	1239, 1264
BspOI	GCTAGC	1 cut(s)	1308
BspPI	GGATC	2 cut(s)	247, 1214
BspT107I	GGYRCC	1 cut(s)	687
BsrDI	GCAATG	3 cut(s)	774, 995, 1294
BsrI	ACTGG	2 cut(s)	228, 623
BssECI	CCNNGG	3 cut(s)	15, 235, 878
BssMI	GATC	5 cut(s)	239, 343, 901, 1219, 1231
BssT1I	CCWWGG	3 cut(s)	15, 235, 878
Bst2UI	CCWGG	2 cut(s)	670, 768
Bst6I	CTCTTC	1 cut(s)	576
BstAPI	GCANNNNNTGC	1 cut(s)	812
BstC8I	GCNNGC	5 cut(s)	675, 953, 1227, 1285, 1306
BstDEI	CTNAG	7 cut(s)	280, 402, 484, 535, 816, 891, 1141
BstDSI	CCRYGG	1 cut(s)	878
BstF5I	GGATG	3 cut(s)	96, 592, 838
BstKTI	GATC	5 cut(s)	242, 346, 904, 1222, 1234
BstMAI	GTCTC	1 cut(s)	36
BstMBI	GATC	5 cut(s)	239, 343, 901, 1219, 1231
BstMWI	GCNNNNNNNGC	4 cut(s)	18, 722, 812, 1021
BstNI	CCWGG	2 cut(s)	670, 768
BstSCI	CCNGG	2 cut(s)	668, 766
BstSFI	CTRYAG	3 cut(s)	1235, 1260, 1272
BstSLI	GKGCMC	2 cut(s)	1065, 1156
BstV1I	GCAGC	2 cut(s)	97, 847
BstV2I	GAAGAC	3 cut(s)	84, 537, 731
BsuRI	GGCC	5 cut(s)	188, 643, 673, 751, 965
BtgI	CCRYGG	1 cut(s)	878
BtsCI	GGATG	3 cut(s)	96, 592, 838
BtsI	GCAGTG	3 cut(s)	447, 1189, 1257
BtsIMutI	CAGTG	3 cut(s)	447, 1189, 1257
Cac8I	GCNNGC	5 cut(s)	675, 953, 1227, 1285, 1306
CaiI	CAGNNNCTG	1 cut(s)	629
CciI	TCATGA	1 cut(s)	526
Cfr13I	GGNCC	5 cut(s)	186, 641, 963, 1071, 1084
CviAII	CATG	4 cut(s)	527, 713, 879, 1025
DdeI	CTNAG	7 cut(s)	280, 402, 484, 535, 816, 891, 1141
DpnI	GATC	5 cut(s)	241, 345, 903, 1221, 1233
DpnII	GATC	5 cut(s)	239, 343, 901, 1219, 1231
DraI	TTTAAA	1 cut(s)	382
Eam1104I	CTCTTC	1 cut(s)	576
EarI	CTCTTC	1 cut(s)	576
Ecl136II	GAGCTC	1 cut(s)	1171
Eco130I	CCWWGG	3 cut(s)	15, 235, 878
Eco147I	AGGCCT	2 cut(s)	673, 751
Eco24I	GRGCYC	2 cut(s)	14, 1173
Eco47I	GGWCC	2 cut(s)	1071, 1084
Eco53kI	GAGCTC	1 cut(s)	1171
Eco57I	CTGAAG	2 cut(s)	432, 600
Eco88I	CYCGRG	1 cut(s)	264
EcoICRI	GAGCTC	1 cut(s)	1171
EcoO109I	RGGNCCY	2 cut(s)	963, 1071
EcoRII	CCWGG	2 cut(s)	668, 766
EcoT14I	CCWWGG	3 cut(s)	15, 235, 878
EcoT38I	GRGCYC	2 cut(s)	14, 1173
ErhI	CCWWGG	3 cut(s)	15, 235, 878
FaeI	CATG	4 cut(s)	530, 716, 882, 1028
FalI	AAGNNNNNCTT	2 cut(s)	726, 758
FaqI	GGGAC	1 cut(s)	190
FatI	CATG	4 cut(s)	526, 712, 878, 1024
Fnu4HI	GCNGC	3 cut(s)	111, 804, 861
FokI	GGATG	3 cut(s)	103, 599, 845
FriOI	GRGCYC	2 cut(s)	14, 1173
Fsp4HI	GCNGC	3 cut(s)	111, 804, 861
FspBI	CTAG	2 cut(s)	957, 1305
GluI	GCNGC	3 cut(s)	111, 804, 861
GsaI	CCCAGC	1 cut(s)	212
GsuI	CTGGAG	2 cut(s)	606, 789
HaeIII	GGCC	5 cut(s)	188, 643, 673, 751, 965
Hin1II	CATG	4 cut(s)	530, 716, 882, 1028
HincII	GTYRAC	1 cut(s)	1135
HindII	GTYRAC	1 cut(s)	1135
HinfI	GANTC	6 cut(s)	29, 67, 163, 338, 840, 1028
HphI	GGTGA	2 cut(s)	88, 932
Hpy166II	GTNNAC	3 cut(s)	794, 1135, 1154
Hpy188I	TCNGA	6 cut(s)	168, 343, 487, 580, 1144, 1350
Hpy188III	TCNNGA	8 cut(s)	49, 148, 176, 271, 527, 890, 914, 1032
Hpy8I	GTNNAC	3 cut(s)	794, 1135, 1154
HpyCH4V	TGCA	9 cut(s)	299, 463, 677, 702, 1154, 1187, 1237, 1262, 1283
HpyF10VI	GCNNNNNNNGC	4 cut(s)	18, 722, 812, 1021
HpyF3I	CTNAG	7 cut(s)	280, 402, 484, 535, 816, 891, 1141
Hsp92II	CATG	4 cut(s)	530, 716, 882, 1028
Kzo9I	GATC	5 cut(s)	239, 343, 901, 1219, 1231
LmnI	GCTCC	3 cut(s)	17, 892, 1168
Lsp1109I	GCAGC	2 cut(s)	97, 847
LweI	GCATC	7 cut(s)	81, 221, 286, 686, 1135, 1270, 1309
MaeI	CTAG	2 cut(s)	957, 1305
MalI	GATC	5 cut(s)	241, 345, 903, 1221, 1233
MboI	GATC	5 cut(s)	239, 343, 901, 1219, 1231
MfeI	CAATTG	2 cut(s)	317, 847
MhlI	GDGCHC	4 cut(s)	14, 1065, 1156, 1173
MluCI	AATT	7 cut(s)	317, 389, 457, 500, 756, 847, 1052
MlyI	GAGTC	2 cut(s)	38, 61
MmeI	TCCRAC	1 cut(s)	1146
MroXI	GAANNNNTTC	2 cut(s)	81, 738
MseI	TTAA	6 cut(s)	311, 381, 491, 503, 810, 1293
MslI	CAYNNNNRTG	1 cut(s)	282
MspR9I	CCNGG	2 cut(s)	670, 768
MunI	CAATTG	2 cut(s)	317, 847
Mva1269I	GAATGC	1 cut(s)	889
MvaI	CCWGG	2 cut(s)	670, 768
MwoI	GCNNNNNNNGC	4 cut(s)	18, 722, 812, 1021
NcoI	CCATGG	1 cut(s)	878
NdeII	GATC	5 cut(s)	239, 343, 901, 1219, 1231
NheI	GCTAGC	1 cut(s)	1304
NlaIII	CATG	4 cut(s)	530, 716, 882, 1028
NlaIV	GGNNCC	6 cut(s)	13, 408, 642, 689, 1086, 1269
PagI	TCATGA	1 cut(s)	526
PceI	AGGCCT	2 cut(s)	673, 751
PctI	GAATGC	1 cut(s)	889
PdmI	GAANNNNTTC	2 cut(s)	81, 738
PfeI	GAWTC	4 cut(s)	163, 338, 840, 1028
PkrI	GCNGC	3 cut(s)	112, 805, 862
PleI	GAGTC	2 cut(s)	37, 61
PpsI	GAGTC	2 cut(s)	37, 61
PpuMI	RGGWCCY	1 cut(s)	1071
Psp124BI	GAGCTC	1 cut(s)	1173
Psp5II	RGGWCCY	1 cut(s)	1071
Psp6I	CCWGG	2 cut(s)	668, 766
PspFI	CCCAGC	1 cut(s)	208
PspGI	CCWGG	2 cut(s)	668, 766
PspN4I	GGNNCC	6 cut(s)	13, 408, 642, 689, 1086, 1269
PspPI	GGNCC	5 cut(s)	186, 641, 963, 1071, 1084
PspPPI	RGGWCCY	1 cut(s)	1071
PstI	CTGCAG	2 cut(s)	1239, 1264
PstNI	CAGNNNCTG	1 cut(s)	629
RseI	CAYNNNNRTG	1 cut(s)	282
SacI	GAGCTC	1 cut(s)	1173
SaqAI	TTAA	6 cut(s)	311, 381, 491, 503, 810, 1293
SatI	GCNGC	3 cut(s)	111, 804, 861
Sau3AI	GATC	5 cut(s)	239, 343, 901, 1219, 1231
Sau96I	GGNCC	5 cut(s)	186, 641, 963, 1071, 1084
SchI	GAGTC	2 cut(s)	38, 61
ScrFI	CCNGG	2 cut(s)	670, 768
SduI	GDGCHC	4 cut(s)	14, 1065, 1156, 1173
SfaNI	GCATC	7 cut(s)	81, 221, 286, 686, 1135, 1270, 1309
SfcI	CTRYAG	3 cut(s)	1235, 1260, 1272
SinI	GGWCC	2 cut(s)	1071, 1084
SmiMI	CAYNNNNRTG	1 cut(s)	282
SmlI	CTYRAG	2 cut(s)	5, 1172
SmoI	CTYRAG	2 cut(s)	5, 1172
Sse9I	AATT	7 cut(s)	317, 389, 457, 500, 756, 847, 1052
SseBI	AGGCCT	2 cut(s)	673, 751
SsiI	CCGC	2 cut(s)	804, 1223
SspI	AATATT	1 cut(s)	1330
SspMI	CTAG	2 cut(s)	957, 1305
SstI	GAGCTC	1 cut(s)	1173
StuI	AGGCCT	2 cut(s)	673, 751
StyD4I	CCNGG	2 cut(s)	668, 766
StyI	CCWWGG	3 cut(s)	15, 235, 878
TaqI	TCGA	2 cut(s)	70, 362
TasI	AATT	7 cut(s)	317, 389, 457, 500, 756, 847, 1052
TauI	GCSGC	1 cut(s)	806
TfiI	GAWTC	4 cut(s)	163, 338, 840, 1028
Tru1I	TTAA	6 cut(s)	311, 381, 491, 503, 810, 1293
Tru9I	TTAA	6 cut(s)	311, 381, 491, 503, 810, 1293
TscAI	CASTG	3 cut(s)	454, 1189, 1264
TseI	GCWGC	2 cut(s)	110, 860
TspDTI	ATGAA	8 cut(s)	347, 515, 541, 543, 555, 747, 1041, 1061
TspRI	CASTG	3 cut(s)	454, 1189, 1264
VneI	GTGCAC	1 cut(s)	1152
VpaK11BI	GGWCC	2 cut(s)	1071, 1084
XapI	RAATTY	2 cut(s)	389, 1052
XmnI	GAANNNNTTC	2 cut(s)	81, 738
XspI	CTAG	2 cut(s)	957, 1305

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.