Prupe.4G054500_v2.0.a1

Transcription factor

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
Physical Location & Seq
Forward (+)
2626976 .. 2630127
3152 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G054500.2

Sequence Viewer

Length: 1455 bp
ATGAGGAAGGGTTCCAAGAGTAATTGCAAGTCTGCTTCTCATAAGCTTTTCAAGGACAAAGCAAAGAACCGTGTGGATGACTTGCAGGGAATGTTCATGGACCTCCTATTCGCCAGAAAGGAGAGCCGCTCCACTGATGCTGTCCTCCTCGAAGAACAAGTCCATCAGATGCTGCGCGAATGGAAAGCCGAGCTAAATGAGCCCTCACCAGCTTCTTCCCTGCAGCAAGGCGGCAGTCTTGGTTCGTTCTCTTCAGACATTTGCCGGCTGTTGCAGCTTTGTGAAGAGGAAGATGATGCCACTAGTCCATTAGCTGCACCGAAGCCTGAGCCTAATGATCAAAATTTGCAAGTTGGAGAAAGTTTTGTCTTTCGTGAGGGATTTACTGTGAATCAAGGGCAACATGAACTTGGCTTCCCGTTGGCTGATCAGTGCAAAAGCTCCCCTTCGGGAGTTCACAATGCTGCTGCTAACAATTTGGAAGGGAATAATCATTTGGACTATCATCAGTATGAATTGCATCAAGAGTTTGAGCACAACTTCTATACTTGTTTTAATAGCACAGCTTTGAGTGGGGAAGATGCGTTGCCTCATGTTTCTACTTATCTACCAAGTATTTGCCCTCCACCCTCTGCTTTCTTGGGCCCAAAATGTGCACTTTGGGATTGCCCAAGGCCTGCTCAAGGATTGGACTGGTGGCAATACTACTGCAGTAGCTTTCATGCTGCTTTAGCATTGAATGAAGGACCACCTGGCATGGGTCCGGTCCTTAGACCTGGGGGCATTGGCCTGAAGGATGGCCTACTTTTTGCTGCTCTTAGTGCGAAGGCACAAGGAAAAGATGTCGGTATTCCTGAGTGTGAGGGAGCTGCTACTGCAAAGTCTCCATGGAATGCACCTGAACTCTTTGATCTTTTGGTTCTTGAGGGCGAGATAATTAGGGAGTGGCTCTTTTTTGATAAGCCTCGAAGAGCTTTTGAGAGTGGTAACAGAAAGCAGAGGTCATTGCCAGATTACAATGGACGAGGTTGGCATGAGTCGAGGAAGCAAGTGATGAATGAATTTGGAGGGCTGAAGAGATCCTACTATATGGATCCTCAACCCCTGAACCATTTTGAGTGGCACCTTTACGAATATGAGATCAACAAGTGTGATGCTTGTGCCTTGTATAGATTGGAACTGAAACTTGTTGATGGGAAGAAGAATTCCAAGGGGAAGCTAACTAATGAGTCAGTAGCTGATCTGCAGAAGCAGATGGGAAGGCTTTCTGCCGAGTTCCCCTCGGATAACAAGCGCTGTGTCAAGGGCAGGGCCAAAGCTAATGAGAAGGTTGGTGTTGGAAATGTCTATTACACTCCAAATCGAGGGGGAACAACAAATGGGACATTTGACTATGGGATTGGTGCACCATACGACTATCTTGTCGAAAATGTCAACGGCTACTATCTAACTTAA

Protein Analysis

485

Amino Acids

54.03

Weight (kDa)

5.87

Isoelectric Point (pI)

43.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1421
AccB1I GGYRCC 1 cut(s) 1122
AccBSI CCGCTC 1 cut(s) 129
AccII CGCG 1 cut(s) 177
AciI CCGC 2 cut(s) 127, 231
AclWI GGATC 3 cut(s) 1074, 1088, 1101
AcsI RAATTY 3 cut(s) 343, 1061, 1204
AcuI CTGAAG 3 cut(s) 237, 812, 1094
AfeI AGCGCT 1 cut(s) 1295
AfiI CCNNNNNNNGG 3 cut(s) 683, 758, 1364
AgsI TTSAA 2 cut(s) 52, 739
AhlI ACTAGT 1 cut(s) 302
AjnI CCWGG 2 cut(s) 751, 775
AjuI GAANNNNNNNTTGG 2 cut(s) 479, 511
AloI GAACNNNNNNTCC 2 cut(s) 399, 431
Alw21I GWGCWC 3 cut(s) 537, 658, 1408
Alw26I GTCTC 1 cut(s) 888
Alw44I GTGCAC 2 cut(s) 654, 1404
AlwI GGATC 3 cut(s) 1074, 1088, 1101
AlwNI CAGNNNCTG 2 cut(s) 172, 1238
Aor51HI AGCGCT 1 cut(s) 1295
AoxI GGCC 5 cut(s) 643, 674, 787, 799, 1311
ApaI GGGCCC 1 cut(s) 647
ApaLI GTGCAC 2 cut(s) 654, 1404
ApeKI GCWGC 9 cut(s) 172, 223, 274, 314, 464, 467, 725, 812, 869
ApoI RAATTY 3 cut(s) 343, 1061, 1204
ArsI GACNNNNNNTTYG 4 cut(s) 92, 124, 144, 176
Asp700I GAANNNNTTC 1 cut(s) 1264
AspLEI GCGC 2 cut(s) 177, 1296
AspS9I GGNCC 7 cut(s) 100, 643, 644, 746, 761, 766, 1311
AsuHPI GGTGA 1 cut(s) 198
AvaII GGWCC 4 cut(s) 100, 746, 761, 766
BaeGI GKGCMC 3 cut(s) 647, 658, 1408
BamHI GGATCC 1 cut(s) 1093
BanI GGYRCC 1 cut(s) 1122
BanII GRGCYC 2 cut(s) 204, 647
BarI GAAGNNNNNNTAC 2 cut(s) 1067, 1099
Bbv12I GWGCWC 3 cut(s) 537, 658, 1408
BbvI GCAGC 9 cut(s) 159, 235, 286, 301, 451, 454, 712, 799, 856
BccI CCATC 4 cut(s) 171, 791, 1187, 1249
BceAI ACGGC 1 cut(s) 1453
BciT130I CCWGG 2 cut(s) 753, 777
BclI TGATCA 2 cut(s) 337, 427
BcoDI GTCTC 1 cut(s) 888
BcuI ACTAGT 1 cut(s) 302
BfaI CTAG 1 cut(s) 303
BfmI CTRYAG 3 cut(s) 221, 709, 1244
BfoI RGCGCY 1 cut(s) 1297
Bme1390I CCNGG 2 cut(s) 753, 777
Bme18I GGWCC 4 cut(s) 100, 746, 761, 766
BmgT120I GGNCC 7 cut(s) 100, 643, 644, 746, 761, 766, 1311
BmiI GGNNCC 5 cut(s) 13, 645, 762, 1095, 1124
BmrFI CCNGG 2 cut(s) 753, 777
BmsI GCATC 6 cut(s) 127, 159, 286, 529, 571, 1144
BplI GAGNNNNNCTC 4 cut(s) 113, 145, 1265, 1297
Bpu10I CCTNAGC 1 cut(s) 327
BpuEI CTTGAG 2 cut(s) 666, 944
BsaJI CCNNGG 5 cut(s) 671, 776, 887, 1209, 1281
BsaWI WCCGGW 1 cut(s) 763
Bsc4I CCNNNNNNNGG 3 cut(s) 683, 758, 1364
Bse118I RCCGGY 1 cut(s) 264
Bse1I ACTGG 1 cut(s) 698
Bse3DI GCAATG 1 cut(s) 1004
BseBI CCWGG 2 cut(s) 753, 777
BseDI CCNNGG 5 cut(s) 671, 776, 887, 1209, 1281
BseGI GGATG 2 cut(s) 82, 802
BseLI CCNNNNNNNGG 3 cut(s) 683, 758, 1364
BseMI GCAATG 1 cut(s) 1004
BseMII CTCAG 2 cut(s) 318, 846
BseNI ACTGG 1 cut(s) 698
BseRI GAGGAG 1 cut(s) 137
BseSI GKGCMC 3 cut(s) 647, 658, 1408
BseXI GCAGC 9 cut(s) 159, 235, 286, 301, 451, 454, 712, 799, 856
BsgI GTGCAG 1 cut(s) 300
Bsh1236I CGCG 1 cut(s) 177
BshFI GGCC 5 cut(s) 645, 676, 789, 801, 1313
BshNI GGYRCC 1 cut(s) 1122
BsiHKAI GWGCWC 3 cut(s) 537, 658, 1408
BsiSI CCGG 2 cut(s) 265, 764
BslFI GGGAC 1 cut(s) 1396
BslI CCNNNNNNNGG 3 cut(s) 683, 758, 1364
BsmAI GTCTC 1 cut(s) 888
BsmFI GGGAC 1 cut(s) 1396
BsmI GAATGC 1 cut(s) 898
BsnI GGCC 5 cut(s) 645, 676, 789, 801, 1313
Bsp120I GGGCCC 1 cut(s) 643
Bsp1286I GDGCHC 5 cut(s) 204, 537, 647, 658, 1408
Bsp143I GATC 7 cut(s) 337, 427, 910, 1079, 1093, 1140, 1240
Bsp19I CCATGG 1 cut(s) 887
BspACI CCGC 2 cut(s) 127, 231
BspANI GGCC 5 cut(s) 645, 676, 789, 801, 1313
BspCNI CTCAG 2 cut(s) 319, 847
BspFNI CGCG 1 cut(s) 177
BspLI GGNNCC 5 cut(s) 13, 645, 762, 1095, 1124
BspMAI CTGCAG 3 cut(s) 225, 713, 1248
BspPI GGATC 3 cut(s) 1074, 1088, 1101
BspQI GCTCTTC 1 cut(s) 964
BspT107I GGYRCC 1 cut(s) 1122
BsrBI CCGCTC 1 cut(s) 129
BsrDI GCAATG 1 cut(s) 1004
BsrFI RCCGGY 1 cut(s) 264
BsrI ACTGG 1 cut(s) 698
BssAI RCCGGY 1 cut(s) 264
BssECI CCNNGG 5 cut(s) 671, 776, 887, 1209, 1281
BssMI GATC 7 cut(s) 337, 427, 910, 1079, 1093, 1140, 1240
BssT1I CCWWGG 3 cut(s) 671, 887, 1209
Bst2UI CCWGG 2 cut(s) 753, 777
Bst4CI ACNGT 2 cut(s) 71, 388
Bst6I CTCTTC 4 cut(s) 256, 279, 964, 1070
BstC8I GCNNGC 2 cut(s) 266, 678
BstDEI CTNAG 4 cut(s) 327, 770, 818, 855
BstDSI CCRYGG 1 cut(s) 887
BstENI CCTNNNNNAGG 1 cut(s) 681
BstF5I GGATG 2 cut(s) 82, 802
BstFNI CGCG 1 cut(s) 177
BstH2I RGCGCY 1 cut(s) 1297
BstHHI GCGC 2 cut(s) 177, 1296
BstKTI GATC 7 cut(s) 340, 430, 913, 1082, 1096, 1143, 1243
BstMAI GTCTC 1 cut(s) 888
BstMBI GATC 7 cut(s) 337, 427, 910, 1079, 1093, 1140, 1240
BstMWI GCNNNNNNNGC 5 cut(s) 199, 274, 731, 821, 875
BstNI CCWGG 2 cut(s) 753, 777
BstSCI CCNGG 2 cut(s) 751, 775
BstSFI CTRYAG 3 cut(s) 221, 709, 1244
BstSLI GKGCMC 3 cut(s) 647, 658, 1408
BstUI CGCG 1 cut(s) 177
BstV1I GCAGC 9 cut(s) 159, 235, 286, 301, 451, 454, 712, 799, 856
BstX2I RGATCY 2 cut(s) 1079, 1093
BstYI RGATCY 2 cut(s) 1079, 1093
BsuRI GGCC 5 cut(s) 645, 676, 789, 801, 1313
BtgI CCRYGG 1 cut(s) 887
BtsCI GGATG 2 cut(s) 82, 802
BtsIMutI CAGTG 2 cut(s) 132, 437
Cac8I GCNNGC 2 cut(s) 266, 678
CaiI CAGNNNCTG 2 cut(s) 172, 1238
CfoI GCGC 2 cut(s) 177, 1296
Cfr10I RCCGGY 1 cut(s) 264
Cfr13I GGNCC 7 cut(s) 100, 643, 644, 746, 761, 766, 1311
CviAII CATG 7 cut(s) 97, 404, 593, 722, 757, 888, 1034
DdeI CTNAG 4 cut(s) 327, 770, 818, 855
DpnI GATC 7 cut(s) 339, 429, 912, 1081, 1095, 1142, 1242
DpnII GATC 7 cut(s) 337, 427, 910, 1079, 1093, 1140, 1240
DrdI GACNNNNNNGTC 1 cut(s) 1421
DseDI GACNNNNNNGTC 1 cut(s) 1421
Eam1104I CTCTTC 4 cut(s) 256, 279, 964, 1070
EarI CTCTTC 4 cut(s) 256, 279, 964, 1070
Eco130I CCWWGG 3 cut(s) 671, 887, 1209
Eco147I AGGCCT 1 cut(s) 676
Eco24I GRGCYC 2 cut(s) 204, 647
Eco47I GGWCC 4 cut(s) 100, 746, 761, 766
Eco47III AGCGCT 1 cut(s) 1295
Eco57I CTGAAG 3 cut(s) 237, 812, 1094
EcoNI CCTNNNNNAGG 1 cut(s) 681
EcoRI GAATTC 1 cut(s) 1204
EcoRII CCWGG 2 cut(s) 751, 775
EcoT14I CCWWGG 3 cut(s) 671, 887, 1209
EcoT38I GRGCYC 2 cut(s) 204, 647
ErhI CCWWGG 3 cut(s) 671, 887, 1209
FaeI CATG 7 cut(s) 100, 407, 596, 725, 760, 891, 1037
FalI AAGNNNNNCTT 2 cut(s) 430, 462
FaqI GGGAC 1 cut(s) 1396
FatI CATG 7 cut(s) 96, 403, 592, 721, 756, 887, 1033
FbaI TGATCA 2 cut(s) 337, 427
FokI GGATG 2 cut(s) 89, 809
FriOI GRGCYC 2 cut(s) 204, 647
FspBI CTAG 1 cut(s) 303
GlaI GCGC 2 cut(s) 176, 1295
HaeII RGCGCY 1 cut(s) 1297
HaeIII GGCC 5 cut(s) 645, 676, 789, 801, 1313
HapII CCGG 2 cut(s) 265, 764
HhaI GCGC 2 cut(s) 177, 1296
Hin1II CATG 7 cut(s) 100, 407, 596, 725, 760, 891, 1037
Hin6I GCGC 2 cut(s) 175, 1294
HinP1I GCGC 2 cut(s) 175, 1294
HincII GTYRAC 1 cut(s) 1435
HindII GTYRAC 1 cut(s) 1435
HindIII AAGCTT 1 cut(s) 44
HinfI GANTC 3 cut(s) 391, 1037, 1229
HpaII CCGG 2 cut(s) 265, 764
HphI GGTGA 1 cut(s) 198
Hpy166II GTNNAC 4 cut(s) 457, 656, 1406, 1435
Hpy188I TCNGA 3 cut(s) 168, 256, 1285
Hpy188III TCNNGA 5 cut(s) 374, 450, 524, 854, 923
Hpy8I GTNNAC 4 cut(s) 457, 656, 1406, 1435
HpyAV CCTTC 7 cut(s) 456, 476, 737, 787, 820, 1254, 1321
HpyCH4III ACNGT 2 cut(s) 71, 388
HpyF10VI GCNNNNNNNGC 5 cut(s) 199, 274, 731, 821, 875
HpyF3I CTNAG 4 cut(s) 327, 770, 818, 855
Hsp92II CATG 7 cut(s) 100, 407, 596, 725, 760, 891, 1037
HspAI GCGC 2 cut(s) 175, 1294
KroI GCCGGC 1 cut(s) 264
KroNI GCCGGC 1 cut(s) 266
Ksp22I TGATCA 2 cut(s) 337, 427
Kzo9I GATC 7 cut(s) 337, 427, 910, 1079, 1093, 1140, 1240
LguI GCTCTTC 1 cut(s) 964
LmnI GCTCC 3 cut(s) 134, 446, 866
Lsp1109I GCAGC 9 cut(s) 159, 235, 286, 301, 451, 454, 712, 799, 856
LweI GCATC 6 cut(s) 127, 159, 286, 529, 571, 1144
MaeI CTAG 1 cut(s) 303
MaeIII GTNAC 1 cut(s) 986
MalI GATC 7 cut(s) 339, 429, 912, 1081, 1095, 1142, 1242
MbiI CCGCTC 1 cut(s) 129
MboI GATC 7 cut(s) 337, 427, 910, 1079, 1093, 1140, 1240
MflI RGATCY 2 cut(s) 1079, 1093
MhlI GDGCHC 5 cut(s) 204, 537, 647, 658, 1408
MluCI AATT 7 cut(s) 22, 343, 475, 515, 936, 1061, 1204
MlyI GAGTC 2 cut(s) 1046, 1238
MmeI TCCRAC 2 cut(s) 334, 1318
MroNI GCCGGC 1 cut(s) 264
MroXI GAANNNNTTC 1 cut(s) 1264
MseI TTAA 2 cut(s) 555, 1453
MslI CAYNNNNRTG 1 cut(s) 510
MspI CCGG 2 cut(s) 265, 764
MspR9I CCNGG 2 cut(s) 753, 777
Mva1269I GAATGC 1 cut(s) 898
MvaI CCWGG 2 cut(s) 753, 777
MvnI CGCG 1 cut(s) 177
MwoI GCNNNNNNNGC 5 cut(s) 199, 274, 731, 821, 875
NaeI GCCGGC 1 cut(s) 266
NcoI CCATGG 1 cut(s) 887
NdeII GATC 7 cut(s) 337, 427, 910, 1079, 1093, 1140, 1240
NgoMIV GCCGGC 1 cut(s) 264
NlaIII CATG 7 cut(s) 100, 407, 596, 725, 760, 891, 1037
NlaIV GGNNCC 5 cut(s) 13, 645, 762, 1095, 1124
NmeAIII GCCGAG 2 cut(s) 214, 1297
PceI AGGCCT 1 cut(s) 676
PciSI GCTCTTC 1 cut(s) 964
PctI GAATGC 1 cut(s) 898
PdiI GCCGGC 1 cut(s) 266
PdmI GAANNNNTTC 1 cut(s) 1264
PfeI GAWTC 1 cut(s) 391
PleI GAGTC 2 cut(s) 1045, 1237
PpsI GAGTC 2 cut(s) 1045, 1237
Psp6I CCWGG 2 cut(s) 751, 775
PspGI CCWGG 2 cut(s) 751, 775
PspN4I GGNNCC 5 cut(s) 13, 645, 762, 1095, 1124
PspOMI GGGCCC 1 cut(s) 643
PspPI GGNCC 7 cut(s) 100, 643, 644, 746, 761, 766, 1311
PstI CTGCAG 3 cut(s) 225, 713, 1248
PstNI CAGNNNCTG 2 cut(s) 172, 1238
PsuI RGATCY 2 cut(s) 1079, 1093
RseI CAYNNNNRTG 1 cut(s) 510
SapI GCTCTTC 1 cut(s) 964
SaqAI TTAA 2 cut(s) 555, 1453
Sau3AI GATC 7 cut(s) 337, 427, 910, 1079, 1093, 1140, 1240
Sau96I GGNCC 7 cut(s) 100, 643, 644, 746, 761, 766, 1311
SchI GAGTC 2 cut(s) 1046, 1238
ScrFI CCNGG 2 cut(s) 753, 777
SduI GDGCHC 5 cut(s) 204, 537, 647, 658, 1408
SfaNI GCATC 6 cut(s) 127, 159, 286, 529, 571, 1144
SfcI CTRYAG 3 cut(s) 221, 709, 1244
SinI GGWCC 4 cut(s) 100, 746, 761, 766
SmiMI CAYNNNNRTG 1 cut(s) 510
SmlI CTYRAG 2 cut(s) 681, 923
SmoI CTYRAG 2 cut(s) 681, 923
SpeI ACTAGT 1 cut(s) 302
Sse9I AATT 7 cut(s) 22, 343, 475, 515, 936, 1061, 1204
SseBI AGGCCT 1 cut(s) 676
SsiI CCGC 2 cut(s) 127, 231
SspMI CTAG 1 cut(s) 303
StuI AGGCCT 1 cut(s) 676
StyD4I CCNGG 2 cut(s) 751, 775
StyI CCWWGG 3 cut(s) 671, 887, 1209
TaaI ACNGT 2 cut(s) 71, 388
TaqI TCGA 5 cut(s) 150, 967, 1040, 1363, 1425
TasI AATT 7 cut(s) 22, 343, 475, 515, 936, 1061, 1204
TauI GCSGC 2 cut(s) 129, 234
TfiI GAWTC 1 cut(s) 391
Tru1I TTAA 2 cut(s) 555, 1453
Tru9I TTAA 2 cut(s) 555, 1453
TscAI CASTG 2 cut(s) 139, 437
TseI GCWGC 9 cut(s) 172, 223, 274, 314, 464, 467, 725, 812, 869
TspDTI ATGAA 7 cut(s) 85, 420, 528, 710, 756, 1070, 1074
TspRI CASTG 2 cut(s) 139, 437
VneI GTGCAC 2 cut(s) 654, 1404
VpaK11BI GGWCC 4 cut(s) 100, 746, 761, 766
XagI CCTNNNNNAGG 1 cut(s) 681
XapI RAATTY 3 cut(s) 343, 1061, 1204
XmnI GAANNNNTTC 1 cut(s) 1264
XspI CTAG 1 cut(s) 303
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.