Transcription factor
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 1421 |
| AccB1I | GGYRCC | 1 cut(s) | 1122 |
| AccBSI | CCGCTC | 1 cut(s) | 129 |
| AccII | CGCG | 1 cut(s) | 177 |
| AciI | CCGC | 2 cut(s) | 127, 231 |
| AclWI | GGATC | 3 cut(s) | 1074, 1088, 1101 |
| AcsI | RAATTY | 3 cut(s) | 343, 1061, 1204 |
| AcuI | CTGAAG | 3 cut(s) | 237, 812, 1094 |
| AfeI | AGCGCT | 1 cut(s) | 1295 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 683, 758, 1364 |
| AgsI | TTSAA | 2 cut(s) | 52, 739 |
| AhlI | ACTAGT | 1 cut(s) | 302 |
| AjnI | CCWGG | 2 cut(s) | 751, 775 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 479, 511 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 399, 431 |
| Alw21I | GWGCWC | 3 cut(s) | 537, 658, 1408 |
| Alw26I | GTCTC | 1 cut(s) | 888 |
| Alw44I | GTGCAC | 2 cut(s) | 654, 1404 |
| AlwI | GGATC | 3 cut(s) | 1074, 1088, 1101 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 172, 1238 |
| Aor51HI | AGCGCT | 1 cut(s) | 1295 |
| AoxI | GGCC | 5 cut(s) | 643, 674, 787, 799, 1311 |
| ApaI | GGGCCC | 1 cut(s) | 647 |
| ApaLI | GTGCAC | 2 cut(s) | 654, 1404 |
| ApeKI | GCWGC | 9 cut(s) | 172, 223, 274, 314, 464, 467, 725, 812, 869 |
| ApoI | RAATTY | 3 cut(s) | 343, 1061, 1204 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 92, 124, 144, 176 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1264 |
| AspLEI | GCGC | 2 cut(s) | 177, 1296 |
| AspS9I | GGNCC | 7 cut(s) | 100, 643, 644, 746, 761, 766, 1311 |
| AsuHPI | GGTGA | 1 cut(s) | 198 |
| AvaII | GGWCC | 4 cut(s) | 100, 746, 761, 766 |
| BaeGI | GKGCMC | 3 cut(s) | 647, 658, 1408 |
| BamHI | GGATCC | 1 cut(s) | 1093 |
| BanI | GGYRCC | 1 cut(s) | 1122 |
| BanII | GRGCYC | 2 cut(s) | 204, 647 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1067, 1099 |
| Bbv12I | GWGCWC | 3 cut(s) | 537, 658, 1408 |
| BbvI | GCAGC | 9 cut(s) | 159, 235, 286, 301, 451, 454, 712, 799, 856 |
| BccI | CCATC | 4 cut(s) | 171, 791, 1187, 1249 |
| BceAI | ACGGC | 1 cut(s) | 1453 |
| BciT130I | CCWGG | 2 cut(s) | 753, 777 |
| BclI | TGATCA | 2 cut(s) | 337, 427 |
| BcoDI | GTCTC | 1 cut(s) | 888 |
| BcuI | ACTAGT | 1 cut(s) | 302 |
| BfaI | CTAG | 1 cut(s) | 303 |
| BfmI | CTRYAG | 3 cut(s) | 221, 709, 1244 |
| BfoI | RGCGCY | 1 cut(s) | 1297 |
| Bme1390I | CCNGG | 2 cut(s) | 753, 777 |
| Bme18I | GGWCC | 4 cut(s) | 100, 746, 761, 766 |
| BmgT120I | GGNCC | 7 cut(s) | 100, 643, 644, 746, 761, 766, 1311 |
| BmiI | GGNNCC | 5 cut(s) | 13, 645, 762, 1095, 1124 |
| BmrFI | CCNGG | 2 cut(s) | 753, 777 |
| BmsI | GCATC | 6 cut(s) | 127, 159, 286, 529, 571, 1144 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 113, 145, 1265, 1297 |
| Bpu10I | CCTNAGC | 1 cut(s) | 327 |
| BpuEI | CTTGAG | 2 cut(s) | 666, 944 |
| BsaJI | CCNNGG | 5 cut(s) | 671, 776, 887, 1209, 1281 |
| BsaWI | WCCGGW | 1 cut(s) | 763 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 683, 758, 1364 |
| Bse118I | RCCGGY | 1 cut(s) | 264 |
| Bse1I | ACTGG | 1 cut(s) | 698 |
| Bse3DI | GCAATG | 1 cut(s) | 1004 |
| BseBI | CCWGG | 2 cut(s) | 753, 777 |
| BseDI | CCNNGG | 5 cut(s) | 671, 776, 887, 1209, 1281 |
| BseGI | GGATG | 2 cut(s) | 82, 802 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 683, 758, 1364 |
| BseMI | GCAATG | 1 cut(s) | 1004 |
| BseMII | CTCAG | 2 cut(s) | 318, 846 |
| BseNI | ACTGG | 1 cut(s) | 698 |
| BseRI | GAGGAG | 1 cut(s) | 137 |
| BseSI | GKGCMC | 3 cut(s) | 647, 658, 1408 |
| BseXI | GCAGC | 9 cut(s) | 159, 235, 286, 301, 451, 454, 712, 799, 856 |
| BsgI | GTGCAG | 1 cut(s) | 300 |
| Bsh1236I | CGCG | 1 cut(s) | 177 |
| BshFI | GGCC | 5 cut(s) | 645, 676, 789, 801, 1313 |
| BshNI | GGYRCC | 1 cut(s) | 1122 |
| BsiHKAI | GWGCWC | 3 cut(s) | 537, 658, 1408 |
| BsiSI | CCGG | 2 cut(s) | 265, 764 |
| BslFI | GGGAC | 1 cut(s) | 1396 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 683, 758, 1364 |
| BsmAI | GTCTC | 1 cut(s) | 888 |
| BsmFI | GGGAC | 1 cut(s) | 1396 |
| BsmI | GAATGC | 1 cut(s) | 898 |
| BsnI | GGCC | 5 cut(s) | 645, 676, 789, 801, 1313 |
| Bsp120I | GGGCCC | 1 cut(s) | 643 |
| Bsp1286I | GDGCHC | 5 cut(s) | 204, 537, 647, 658, 1408 |
| Bsp143I | GATC | 7 cut(s) | 337, 427, 910, 1079, 1093, 1140, 1240 |
| Bsp19I | CCATGG | 1 cut(s) | 887 |
| BspACI | CCGC | 2 cut(s) | 127, 231 |
| BspANI | GGCC | 5 cut(s) | 645, 676, 789, 801, 1313 |
| BspCNI | CTCAG | 2 cut(s) | 319, 847 |
| BspFNI | CGCG | 1 cut(s) | 177 |
| BspLI | GGNNCC | 5 cut(s) | 13, 645, 762, 1095, 1124 |
| BspMAI | CTGCAG | 3 cut(s) | 225, 713, 1248 |
| BspPI | GGATC | 3 cut(s) | 1074, 1088, 1101 |
| BspQI | GCTCTTC | 1 cut(s) | 964 |
| BspT107I | GGYRCC | 1 cut(s) | 1122 |
| BsrBI | CCGCTC | 1 cut(s) | 129 |
| BsrDI | GCAATG | 1 cut(s) | 1004 |
| BsrFI | RCCGGY | 1 cut(s) | 264 |
| BsrI | ACTGG | 1 cut(s) | 698 |
| BssAI | RCCGGY | 1 cut(s) | 264 |
| BssECI | CCNNGG | 5 cut(s) | 671, 776, 887, 1209, 1281 |
| BssMI | GATC | 7 cut(s) | 337, 427, 910, 1079, 1093, 1140, 1240 |
| BssT1I | CCWWGG | 3 cut(s) | 671, 887, 1209 |
| Bst2UI | CCWGG | 2 cut(s) | 753, 777 |
| Bst4CI | ACNGT | 2 cut(s) | 71, 388 |
| Bst6I | CTCTTC | 4 cut(s) | 256, 279, 964, 1070 |
| BstC8I | GCNNGC | 2 cut(s) | 266, 678 |
| BstDEI | CTNAG | 4 cut(s) | 327, 770, 818, 855 |
| BstDSI | CCRYGG | 1 cut(s) | 887 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 681 |
| BstF5I | GGATG | 2 cut(s) | 82, 802 |
| BstFNI | CGCG | 1 cut(s) | 177 |
| BstH2I | RGCGCY | 1 cut(s) | 1297 |
| BstHHI | GCGC | 2 cut(s) | 177, 1296 |
| BstKTI | GATC | 7 cut(s) | 340, 430, 913, 1082, 1096, 1143, 1243 |
| BstMAI | GTCTC | 1 cut(s) | 888 |
| BstMBI | GATC | 7 cut(s) | 337, 427, 910, 1079, 1093, 1140, 1240 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 199, 274, 731, 821, 875 |
| BstNI | CCWGG | 2 cut(s) | 753, 777 |
| BstSCI | CCNGG | 2 cut(s) | 751, 775 |
| BstSFI | CTRYAG | 3 cut(s) | 221, 709, 1244 |
| BstSLI | GKGCMC | 3 cut(s) | 647, 658, 1408 |
| BstUI | CGCG | 1 cut(s) | 177 |
| BstV1I | GCAGC | 9 cut(s) | 159, 235, 286, 301, 451, 454, 712, 799, 856 |
| BstX2I | RGATCY | 2 cut(s) | 1079, 1093 |
| BstYI | RGATCY | 2 cut(s) | 1079, 1093 |
| BsuRI | GGCC | 5 cut(s) | 645, 676, 789, 801, 1313 |
| BtgI | CCRYGG | 1 cut(s) | 887 |
| BtsCI | GGATG | 2 cut(s) | 82, 802 |
| BtsIMutI | CAGTG | 2 cut(s) | 132, 437 |
| Cac8I | GCNNGC | 2 cut(s) | 266, 678 |
| CaiI | CAGNNNCTG | 2 cut(s) | 172, 1238 |
| CfoI | GCGC | 2 cut(s) | 177, 1296 |
| Cfr10I | RCCGGY | 1 cut(s) | 264 |
| Cfr13I | GGNCC | 7 cut(s) | 100, 643, 644, 746, 761, 766, 1311 |
| CviAII | CATG | 7 cut(s) | 97, 404, 593, 722, 757, 888, 1034 |
| DdeI | CTNAG | 4 cut(s) | 327, 770, 818, 855 |
| DpnI | GATC | 7 cut(s) | 339, 429, 912, 1081, 1095, 1142, 1242 |
| DpnII | GATC | 7 cut(s) | 337, 427, 910, 1079, 1093, 1140, 1240 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1421 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1421 |
| Eam1104I | CTCTTC | 4 cut(s) | 256, 279, 964, 1070 |
| EarI | CTCTTC | 4 cut(s) | 256, 279, 964, 1070 |
| Eco130I | CCWWGG | 3 cut(s) | 671, 887, 1209 |
| Eco147I | AGGCCT | 1 cut(s) | 676 |
| Eco24I | GRGCYC | 2 cut(s) | 204, 647 |
| Eco47I | GGWCC | 4 cut(s) | 100, 746, 761, 766 |
| Eco47III | AGCGCT | 1 cut(s) | 1295 |
| Eco57I | CTGAAG | 3 cut(s) | 237, 812, 1094 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 681 |
| EcoRI | GAATTC | 1 cut(s) | 1204 |
| EcoRII | CCWGG | 2 cut(s) | 751, 775 |
| EcoT14I | CCWWGG | 3 cut(s) | 671, 887, 1209 |
| EcoT38I | GRGCYC | 2 cut(s) | 204, 647 |
| ErhI | CCWWGG | 3 cut(s) | 671, 887, 1209 |
| FaeI | CATG | 7 cut(s) | 100, 407, 596, 725, 760, 891, 1037 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 430, 462 |
| FaqI | GGGAC | 1 cut(s) | 1396 |
| FatI | CATG | 7 cut(s) | 96, 403, 592, 721, 756, 887, 1033 |
| FbaI | TGATCA | 2 cut(s) | 337, 427 |
| FokI | GGATG | 2 cut(s) | 89, 809 |
| FriOI | GRGCYC | 2 cut(s) | 204, 647 |
| FspBI | CTAG | 1 cut(s) | 303 |
| GlaI | GCGC | 2 cut(s) | 176, 1295 |
| HaeII | RGCGCY | 1 cut(s) | 1297 |
| HaeIII | GGCC | 5 cut(s) | 645, 676, 789, 801, 1313 |
| HapII | CCGG | 2 cut(s) | 265, 764 |
| HhaI | GCGC | 2 cut(s) | 177, 1296 |
| Hin1II | CATG | 7 cut(s) | 100, 407, 596, 725, 760, 891, 1037 |
| Hin6I | GCGC | 2 cut(s) | 175, 1294 |
| HinP1I | GCGC | 2 cut(s) | 175, 1294 |
| HincII | GTYRAC | 1 cut(s) | 1435 |
| HindII | GTYRAC | 1 cut(s) | 1435 |
| HindIII | AAGCTT | 1 cut(s) | 44 |
| HinfI | GANTC | 3 cut(s) | 391, 1037, 1229 |
| HpaII | CCGG | 2 cut(s) | 265, 764 |
| HphI | GGTGA | 1 cut(s) | 198 |
| Hpy166II | GTNNAC | 4 cut(s) | 457, 656, 1406, 1435 |
| Hpy188I | TCNGA | 3 cut(s) | 168, 256, 1285 |
| Hpy188III | TCNNGA | 5 cut(s) | 374, 450, 524, 854, 923 |
| Hpy8I | GTNNAC | 4 cut(s) | 457, 656, 1406, 1435 |
| HpyAV | CCTTC | 7 cut(s) | 456, 476, 737, 787, 820, 1254, 1321 |
| HpyCH4III | ACNGT | 2 cut(s) | 71, 388 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 199, 274, 731, 821, 875 |
| HpyF3I | CTNAG | 4 cut(s) | 327, 770, 818, 855 |
| Hsp92II | CATG | 7 cut(s) | 100, 407, 596, 725, 760, 891, 1037 |
| HspAI | GCGC | 2 cut(s) | 175, 1294 |
| KroI | GCCGGC | 1 cut(s) | 264 |
| KroNI | GCCGGC | 1 cut(s) | 266 |
| Ksp22I | TGATCA | 2 cut(s) | 337, 427 |
| Kzo9I | GATC | 7 cut(s) | 337, 427, 910, 1079, 1093, 1140, 1240 |
| LguI | GCTCTTC | 1 cut(s) | 964 |
| LmnI | GCTCC | 3 cut(s) | 134, 446, 866 |
| Lsp1109I | GCAGC | 9 cut(s) | 159, 235, 286, 301, 451, 454, 712, 799, 856 |
| LweI | GCATC | 6 cut(s) | 127, 159, 286, 529, 571, 1144 |
| MaeI | CTAG | 1 cut(s) | 303 |
| MaeIII | GTNAC | 1 cut(s) | 986 |
| MalI | GATC | 7 cut(s) | 339, 429, 912, 1081, 1095, 1142, 1242 |
| MbiI | CCGCTC | 1 cut(s) | 129 |
| MboI | GATC | 7 cut(s) | 337, 427, 910, 1079, 1093, 1140, 1240 |
| MflI | RGATCY | 2 cut(s) | 1079, 1093 |
| MhlI | GDGCHC | 5 cut(s) | 204, 537, 647, 658, 1408 |
| MluCI | AATT | 7 cut(s) | 22, 343, 475, 515, 936, 1061, 1204 |
| MlyI | GAGTC | 2 cut(s) | 1046, 1238 |
| MmeI | TCCRAC | 2 cut(s) | 334, 1318 |
| MroNI | GCCGGC | 1 cut(s) | 264 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1264 |
| MseI | TTAA | 2 cut(s) | 555, 1453 |
| MslI | CAYNNNNRTG | 1 cut(s) | 510 |
| MspI | CCGG | 2 cut(s) | 265, 764 |
| MspR9I | CCNGG | 2 cut(s) | 753, 777 |
| Mva1269I | GAATGC | 1 cut(s) | 898 |
| MvaI | CCWGG | 2 cut(s) | 753, 777 |
| MvnI | CGCG | 1 cut(s) | 177 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 199, 274, 731, 821, 875 |
| NaeI | GCCGGC | 1 cut(s) | 266 |
| NcoI | CCATGG | 1 cut(s) | 887 |
| NdeII | GATC | 7 cut(s) | 337, 427, 910, 1079, 1093, 1140, 1240 |
| NgoMIV | GCCGGC | 1 cut(s) | 264 |
| NlaIII | CATG | 7 cut(s) | 100, 407, 596, 725, 760, 891, 1037 |
| NlaIV | GGNNCC | 5 cut(s) | 13, 645, 762, 1095, 1124 |
| NmeAIII | GCCGAG | 2 cut(s) | 214, 1297 |
| PceI | AGGCCT | 1 cut(s) | 676 |
| PciSI | GCTCTTC | 1 cut(s) | 964 |
| PctI | GAATGC | 1 cut(s) | 898 |
| PdiI | GCCGGC | 1 cut(s) | 266 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1264 |
| PfeI | GAWTC | 1 cut(s) | 391 |
| PleI | GAGTC | 2 cut(s) | 1045, 1237 |
| PpsI | GAGTC | 2 cut(s) | 1045, 1237 |
| Psp6I | CCWGG | 2 cut(s) | 751, 775 |
| PspGI | CCWGG | 2 cut(s) | 751, 775 |
| PspN4I | GGNNCC | 5 cut(s) | 13, 645, 762, 1095, 1124 |
| PspOMI | GGGCCC | 1 cut(s) | 643 |
| PspPI | GGNCC | 7 cut(s) | 100, 643, 644, 746, 761, 766, 1311 |
| PstI | CTGCAG | 3 cut(s) | 225, 713, 1248 |
| PstNI | CAGNNNCTG | 2 cut(s) | 172, 1238 |
| PsuI | RGATCY | 2 cut(s) | 1079, 1093 |
| RseI | CAYNNNNRTG | 1 cut(s) | 510 |
| SapI | GCTCTTC | 1 cut(s) | 964 |
| SaqAI | TTAA | 2 cut(s) | 555, 1453 |
| Sau3AI | GATC | 7 cut(s) | 337, 427, 910, 1079, 1093, 1140, 1240 |
| Sau96I | GGNCC | 7 cut(s) | 100, 643, 644, 746, 761, 766, 1311 |
| SchI | GAGTC | 2 cut(s) | 1046, 1238 |
| ScrFI | CCNGG | 2 cut(s) | 753, 777 |
| SduI | GDGCHC | 5 cut(s) | 204, 537, 647, 658, 1408 |
| SfaNI | GCATC | 6 cut(s) | 127, 159, 286, 529, 571, 1144 |
| SfcI | CTRYAG | 3 cut(s) | 221, 709, 1244 |
| SinI | GGWCC | 4 cut(s) | 100, 746, 761, 766 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 510 |
| SmlI | CTYRAG | 2 cut(s) | 681, 923 |
| SmoI | CTYRAG | 2 cut(s) | 681, 923 |
| SpeI | ACTAGT | 1 cut(s) | 302 |
| Sse9I | AATT | 7 cut(s) | 22, 343, 475, 515, 936, 1061, 1204 |
| SseBI | AGGCCT | 1 cut(s) | 676 |
| SsiI | CCGC | 2 cut(s) | 127, 231 |
| SspMI | CTAG | 1 cut(s) | 303 |
| StuI | AGGCCT | 1 cut(s) | 676 |
| StyD4I | CCNGG | 2 cut(s) | 751, 775 |
| StyI | CCWWGG | 3 cut(s) | 671, 887, 1209 |
| TaaI | ACNGT | 2 cut(s) | 71, 388 |
| TaqI | TCGA | 5 cut(s) | 150, 967, 1040, 1363, 1425 |
| TasI | AATT | 7 cut(s) | 22, 343, 475, 515, 936, 1061, 1204 |
| TauI | GCSGC | 2 cut(s) | 129, 234 |
| TfiI | GAWTC | 1 cut(s) | 391 |
| Tru1I | TTAA | 2 cut(s) | 555, 1453 |
| Tru9I | TTAA | 2 cut(s) | 555, 1453 |
| TscAI | CASTG | 2 cut(s) | 139, 437 |
| TseI | GCWGC | 9 cut(s) | 172, 223, 274, 314, 464, 467, 725, 812, 869 |
| TspDTI | ATGAA | 7 cut(s) | 85, 420, 528, 710, 756, 1070, 1074 |
| TspRI | CASTG | 2 cut(s) | 139, 437 |
| VneI | GTGCAC | 2 cut(s) | 654, 1404 |
| VpaK11BI | GGWCC | 4 cut(s) | 100, 746, 761, 766 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 681 |
| XapI | RAATTY | 3 cut(s) | 343, 1061, 1204 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1264 |
| XspI | CTAG | 1 cut(s) | 303 |