AT1G30760

Belongs to the oxygen-dependent FAD-linked oxidoreductase family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
10918267 .. 10920709
2443 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G30760.2

Sequence Viewer

Length: 1605 bp
ATGGCGTTTGTATTAATGAATAACACAAACGCGTTTCTTGTAACGCTACTATTACTATCCCTTTCTTACATTCCATTGTCTTTTTCCACAATCCAACAAGACTTCGTGATGTGTCTAGTCGACAACTCCGACGCTTCCTTTCCAATGGACTCATCGTTCTTCACTCACGACCTAAACGCCTCTTCCTTTAAACTCGCCTTAGAGACGTCAGCTCAAAATCTCCGTTACTTGATGCCTTCAAATCCTAAGCCAGAGTTCATTTTCGAGCCGCTTTACGAAACGCACGTTCAGGCCGCCGTTCTTTGCGCCAAGAAGCTGAAGCTTCACTTGCGGTTAAGAAGCGGTGGTCATGACTACGAAGGCCTCTCTTACGTCTCGGAGATGGAAACGGCGTTTGTGATCGTCGACTTGTCCAAGCTTAGACAGATCAGTGTTGATATAGAAAGTAACAGCGCGTGGGTTCACGCTGGTGCTTCTATTGGAGAGGTTTATTACAGGATCCAAGAGAAAAGCAAAATCCACGGTTTTCCGGCGGGTTTATGCACCAGCCTAGGCATCGGCGGTCACATAATCGGCGGAGCCTATGGTTCAATGATGCGTAAGTTTGGTCTCGGAGCTGATAACGTCCTCGATGCTAGGATCGTTGACGCTGACGGCAAAATCTTGAATCGCGCGGCGATGGGAGAAGACGTTTTCTGGGCGATTCGAGGAGGTGGAGGAGGAAGCTTCGGCGTAATACTTGCCTGGAAAATAAAGCTCGTTCCGGTGCCAGAGATTGTTACGGTGTTTACCGTCACGAGGACGCTTGAGCAAGACGGAACTAAGCTTTTGTACAAGTGGCAACAAGTCGCTGATAAGCTCGACGAAGATCTCTTTATCCGTGTGATTATTCAGCCGACGAGCAAAACTCCGAAGAGCAAAGAAAGAACTATCTCGACTTCGTACCAAGGCCAATTTCTCGGCGACGCTAATCGTTTGTTGCAGGTGATGCAAAGGAGTTTCCCACAGCTTGGACTAACGAAGAAAGATTGTTTAGAGACAAGCTGGATCAAATCGGTGATGTACATTGCAGGTTTTCCAAGCACTGCCCCATCAGAAGCTTTACTCGATGGGAAATCGTTGTTCAAGAATTACTTCAAAGCCAAGTCAGACTATGTGGAAGAGCCAATTCCAGTAGAGGGATTAGAAGGGTTGTGGGAGAAGCTTCTAGAAGAGGACTCACCATTGACTATATGGAATCCTTATGGAGGAATGATGGCAAAAATTCCCGAGACAGAGACACCTTTCCCACATAGGAGTGGGACATTGTTCAAGATACAATGGCTGACTTTGTGGCAAGATGGGAAAACAAGCGAGGCGAAGCATATGGGGTGGATGAGGGAAATGTATAGTTACATGGAGCAGTATGTATCGAAAAGCCCGAGATCCGCGTACGTGAACTATAGAGATCTTGATTTGGGGATGAATGGTAAAGGGAGTGATGCAAGAGAATGGGGGAATAGGTATTTCAAGGGTAATTTTGAAAGGTTGGTGGAGATTAAAGCTAAGTTTGATCCTGAGAATTTCTTTAGACATGAACAAAGTATTCCTACAGAACTTGAGTGA

Protein Analysis

534

Amino Acids

60.19

Weight (kDa)

6.01

Isoelectric Point (pI)

32.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAD_binding_4 PF01565 102 - 240 4.2e-24 FAD binding domain
BBE PF08031 495 - 548 6.4e-23 Berberine and berberine like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 973
AatII GACGTC 1 cut(s) 209
Acc36I ACCTGC 2 cut(s) 973, 1061
AccB1I GGYRCC 1 cut(s) 766
AccB7I CCANNNNNTGG 1 cut(s) 1010
AccI GTMKAC 2 cut(s) 120, 405
AccII CGCG 5 cut(s) 32, 455, 672, 674, 1430
AciI CCGC 9 cut(s) 269, 294, 331, 342, 533, 561, 576, 674, 1428
AclWI GGATC 6 cut(s) 493, 506, 647, 1055, 1419, 1547
AcsI RAATTY 2 cut(s) 1263, 1561
AcuI CTGAAG 1 cut(s) 338
AcyI GRCGYC 1 cut(s) 206
AfaI GTAC 4 cut(s) 833, 944, 1064, 1433
AfiI CCNNNNNNNGG 4 cut(s) 798, 1010, 1178, 1247
AflIII ACRYGT 1 cut(s) 30
AgsI TTSAA 8 cut(s) 240, 591, 667, 1126, 1138, 1312, 1510, 1523
AjnI CCWGG 1 cut(s) 743
AjuI GAANNNNNNNTTGG 2 cut(s) 939, 971
AleI CACNNNNGTG 1 cut(s) 468
AloI GAACNNNNNNTCC 2 cut(s) 140, 172
Alw26I GTCTC 6 cut(s) 197, 379, 614, 1031, 1265, 1271
AlwI GGATC 6 cut(s) 493, 506, 647, 1055, 1419, 1547
Ama87I CYCGRG 2 cut(s) 1268, 1420
AoxI GGCC 3 cut(s) 291, 361, 949
ApoI RAATTY 2 cut(s) 1263, 1561
AseI ATTAAT 1 cut(s) 14
Asp700I GAANNNNTTC 1 cut(s) 1133
AspA2I CCTAGG 1 cut(s) 550
AspLEI GCGC 3 cut(s) 308, 455, 674
AsuHPI GGTGA 3 cut(s) 997, 1069, 1212
AvaI CYCGRG 2 cut(s) 1268, 1420
AvrII CCTAGG 1 cut(s) 550
BamHI GGATCC 1 cut(s) 498
BanI GGYRCC 1 cut(s) 766
BauI CACGAG 1 cut(s) 796
BbsI GAAGAC 1 cut(s) 693
BccI CCATC 6 cut(s) 376, 673, 1099, 1103, 1249, 1334
BceAI ACGGC 3 cut(s) 281, 405, 670
BciT130I CCWGG 1 cut(s) 745
BcoDI GTCTC 6 cut(s) 197, 379, 614, 1031, 1265, 1271
BfaI CTAG 4 cut(s) 116, 551, 636, 1208
BfmI CTRYAG 2 cut(s) 1441, 1590
BfuAI ACCTGC 2 cut(s) 973, 1061
BglII AGATCT 2 cut(s) 868, 1447
BisI GCNGC 3 cut(s) 269, 294, 675
BlnI CCTAGG 1 cut(s) 550
BlsI GCNGC 3 cut(s) 270, 295, 676
Bme1390I CCNGG 1 cut(s) 745
BmeT110I CYCGRG 2 cut(s) 1268, 1420
BmiI GGNNCC 3 cut(s) 500, 580, 768
BmrFI CCNGG 1 cut(s) 745
BmsI GCATC 6 cut(s) 222, 564, 585, 622, 978, 1471
BpiI GAAGAC 1 cut(s) 693
BplI GAGNNNNNCTC 2 cut(s) 892, 924
Bpu10I CCTNAGC 1 cut(s) 246
BpuEI CTTGAG 1 cut(s) 827
BsaAI YACGTR 1 cut(s) 1435
BsaHI GRCGYC 1 cut(s) 206
BsaI GGTCTC 1 cut(s) 614
BsaJI CCNNGG 3 cut(s) 520, 550, 946
BsaWI WCCGGW 1 cut(s) 763
BsaXI ACNNNNNCTCC 2 cut(s) 675, 705
Bsc4I CCNNNNNNNGG 4 cut(s) 798, 1010, 1178, 1247
Bse1I ACTGG 1 cut(s) 1172
Bse3DI GCAATG 1 cut(s) 1065
BseBI CCWGG 1 cut(s) 745
BseDI CCNNGG 3 cut(s) 520, 550, 946
BseGI GGATG 2 cut(s) 1380, 1467
BseLI CCNNNNNNNGG 4 cut(s) 798, 1010, 1178, 1247
BseMI GCAATG 1 cut(s) 1065
BseMII CTCAG 1 cut(s) 1548
BseNI ACTGG 1 cut(s) 1172
BseRI GAGGAG 2 cut(s) 723, 732
Bsh1236I CGCG 5 cut(s) 32, 455, 672, 674, 1430
BshFI GGCC 3 cut(s) 293, 363, 951
BshNI GGYRCC 1 cut(s) 766
BsiHKCI CYCGRG 2 cut(s) 1268, 1420
BsiSI CCGG 2 cut(s) 530, 764
BsiWI CGTACG 1 cut(s) 1431
BslFI GGGAC 1 cut(s) 1315
BslI CCNNNNNNNGG 4 cut(s) 798, 1010, 1178, 1247
BsmAI GTCTC 6 cut(s) 197, 379, 614, 1031, 1265, 1271
BsmBI CGTCTC 2 cut(s) 197, 379
BsmFI GGGAC 1 cut(s) 1315
BsnI GGCC 3 cut(s) 293, 363, 951
Bso31I GGTCTC 1 cut(s) 614
BsoBI CYCGRG 2 cut(s) 1268, 1420
Bsp1407I TGTACA 2 cut(s) 831, 1062
Bsp143I GATC 9 cut(s) 399, 426, 498, 639, 868, 1047, 1424, 1447, 1552
BspACI CCGC 9 cut(s) 269, 294, 331, 342, 533, 561, 576, 674, 1428
BspANI GGCC 3 cut(s) 293, 363, 951
BspCNI CTCAG 1 cut(s) 1549
BspFNI CGCG 5 cut(s) 32, 455, 672, 674, 1430
BspHI TCATGA 1 cut(s) 349
BspLI GGNNCC 3 cut(s) 500, 580, 768
BspMI ACCTGC 2 cut(s) 973, 1061
BspPI GGATC 6 cut(s) 493, 506, 647, 1055, 1419, 1547
BspQI GCTCTTC 2 cut(s) 908, 1155
BspT107I GGYRCC 1 cut(s) 766
BspTNI GGTCTC 1 cut(s) 614
BsrDI GCAATG 1 cut(s) 1065
BsrGI TGTACA 2 cut(s) 831, 1062
BsrI ACTGG 1 cut(s) 1172
BssECI CCNNGG 3 cut(s) 520, 550, 946
BssMI GATC 9 cut(s) 399, 426, 498, 639, 868, 1047, 1424, 1447, 1552
BssNI GRCGYC 1 cut(s) 206
BssSI CACGAG 1 cut(s) 796
BssT1I CCWWGG 2 cut(s) 550, 946
Bst2BI CACGAG 1 cut(s) 796
Bst2UI CCWGG 1 cut(s) 745
Bst4CI ACNGT 3 cut(s) 524, 784, 793
Bst6I CTCTTC 4 cut(s) 187, 908, 1155, 1206
BstACI GRCGYC 1 cut(s) 206
BstAPI GCANNNNNTGC 1 cut(s) 988
BstAUI TGTACA 2 cut(s) 831, 1062
BstBAI YACGTR 1 cut(s) 1435
BstDEI CTNAG 6 cut(s) 199, 246, 419, 822, 1545, 1557
BstDSI CCRYGG 1 cut(s) 520
BstENI CCTNNNNNAGG 1 cut(s) 1245
BstF5I GGATG 2 cut(s) 1380, 1467
BstFNI CGCG 5 cut(s) 32, 455, 672, 674, 1430
BstHHI GCGC 3 cut(s) 308, 455, 674
BstKTI GATC 9 cut(s) 402, 429, 501, 642, 871, 1050, 1427, 1450, 1555
BstMAI GTCTC 6 cut(s) 197, 379, 614, 1031, 1265, 1271
BstMBI GATC 9 cut(s) 399, 426, 498, 639, 868, 1047, 1424, 1447, 1552
BstMWI GCNNNNNNNGC 2 cut(s) 328, 988
BstNI CCWGG 1 cut(s) 745
BstSCI CCNGG 1 cut(s) 743
BstSFI CTRYAG 2 cut(s) 1441, 1590
BstUI CGCG 5 cut(s) 32, 455, 672, 674, 1430
BstV2I GAAGAC 1 cut(s) 693
BstX2I RGATCY 4 cut(s) 498, 868, 1424, 1447
BstYI RGATCY 4 cut(s) 498, 868, 1424, 1447
BsuRI GGCC 3 cut(s) 293, 363, 951
BtgI CCRYGG 1 cut(s) 520
BtgZI GCGATG 1 cut(s) 692
BtsCI GGATG 2 cut(s) 1380, 1467
BtsI GCAGTG 1 cut(s) 1083
BtsIMutI CAGTG 2 cut(s) 436, 1083
BveI ACCTGC 2 cut(s) 973, 1061
CciI TCATGA 1 cut(s) 349
CfoI GCGC 3 cut(s) 308, 455, 674
CseI GACGC 4 cut(s) 140, 656, 811, 974
Csp6I GTAC 4 cut(s) 832, 943, 1063, 1432
CviAII CATG 3 cut(s) 350, 1396, 1574
CviQI GTAC 4 cut(s) 832, 943, 1063, 1432
DdeI CTNAG 6 cut(s) 199, 246, 419, 822, 1545, 1557
DpnI GATC 9 cut(s) 401, 428, 500, 641, 870, 1049, 1426, 1449, 1554
DpnII GATC 9 cut(s) 399, 426, 498, 639, 868, 1047, 1424, 1447, 1552
DraI TTTAAA 1 cut(s) 190
Eam1104I CTCTTC 4 cut(s) 187, 908, 1155, 1206
EarI CTCTTC 4 cut(s) 187, 908, 1155, 1206
EciI GGCGGA 1 cut(s) 591
Eco130I CCWWGG 2 cut(s) 550, 946
Eco147I AGGCCT 1 cut(s) 363
Eco31I GGTCTC 1 cut(s) 614
Eco57I CTGAAG 1 cut(s) 338
Eco88I CYCGRG 2 cut(s) 1268, 1420
EcoNI CCTNNNNNAGG 1 cut(s) 1245
EcoRII CCWGG 1 cut(s) 743
EcoT14I CCWWGG 2 cut(s) 550, 946
ErhI CCWWGG 2 cut(s) 550, 946
Esp3I CGTCTC 2 cut(s) 197, 379
FaeI CATG 3 cut(s) 353, 1399, 1577
FalI AAGNNNNNCTT 4 cut(s) 311, 343, 1118, 1150
FaqI GGGAC 1 cut(s) 1315
FatI CATG 3 cut(s) 349, 1395, 1573
FauI CCCGC 1 cut(s) 526
FauNDI CATATG 1 cut(s) 1365
FblI GTMKAC 2 cut(s) 120, 405
Fnu4HI GCNGC 3 cut(s) 269, 294, 675
FokI GGATG 2 cut(s) 1387, 1474
Fsp4HI GCNGC 3 cut(s) 269, 294, 675
FspBI CTAG 4 cut(s) 116, 551, 636, 1208
GlaI GCGC 3 cut(s) 307, 454, 673
GluI GCNGC 3 cut(s) 269, 294, 675
HaeIII GGCC 3 cut(s) 293, 363, 951
HapII CCGG 2 cut(s) 530, 764
HgaI GACGC 4 cut(s) 140, 656, 811, 974
HhaI GCGC 3 cut(s) 308, 455, 674
Hin1I GRCGYC 1 cut(s) 206
Hin1II CATG 3 cut(s) 353, 1399, 1577
Hin6I GCGC 3 cut(s) 306, 453, 672
HinP1I GCGC 3 cut(s) 306, 453, 672
HincII GTYRAC 3 cut(s) 121, 406, 646
HindII GTYRAC 3 cut(s) 121, 406, 646
HindIII AAGCTT 6 cut(s) 320, 416, 724, 824, 1098, 1202
HinfI GANTC 5 cut(s) 149, 667, 703, 1217, 1237
HpaII CCGG 2 cut(s) 530, 764
HphI GGTGA 3 cut(s) 997, 1069, 1212
Hpy166II GTNNAC 6 cut(s) 121, 406, 463, 646, 789, 1438
Hpy188I TCNGA 6 cut(s) 130, 379, 614, 912, 1096, 1150
Hpy8I GTNNAC 6 cut(s) 121, 406, 463, 646, 789, 1438
Hpy99I CGWCG 5 cut(s) 134, 407, 866, 901, 968
HpyAV CCTTC 3 cut(s) 246, 353, 1181
HpyCH4III ACNGT 3 cut(s) 524, 784, 793
HpyCH4IV ACGT 6 cut(s) 206, 285, 372, 624, 690, 1434
HpyCH4V TGCA 5 cut(s) 543, 982, 991, 1070, 1484
HpyF10VI GCNNNNNNNGC 2 cut(s) 328, 988
HpyF3I CTNAG 6 cut(s) 199, 246, 419, 822, 1545, 1557
HpySE526I ACGT 6 cut(s) 206, 285, 372, 624, 690, 1434
Hsp92I GRCGYC 1 cut(s) 206
Hsp92II CATG 3 cut(s) 353, 1399, 1577
HspAI GCGC 3 cut(s) 306, 453, 672
Kzo9I GATC 9 cut(s) 399, 426, 498, 639, 868, 1047, 1424, 1447, 1552
LguI GCTCTTC 2 cut(s) 908, 1155
LmnI GCTCC 3 cut(s) 578, 614, 1399
LweI GCATC 6 cut(s) 222, 564, 585, 622, 978, 1471
MaeI CTAG 4 cut(s) 116, 551, 636, 1208
MaeII ACGT 6 cut(s) 206, 285, 372, 624, 690, 1434
MaeIII GTNAC 7 cut(s) 40, 224, 446, 563, 778, 793, 1391
MalI GATC 9 cut(s) 401, 428, 500, 641, 870, 1049, 1426, 1449, 1554
MboI GATC 9 cut(s) 399, 426, 498, 639, 868, 1047, 1424, 1447, 1552
MboII GAAGA 8 cut(s) 151, 174, 698, 878, 925, 1033, 1172, 1223
MflI RGATCY 4 cut(s) 498, 868, 1424, 1447
MluCI AATT 6 cut(s) 953, 1129, 1167, 1263, 1516, 1561
MluI ACGCGT 1 cut(s) 30
MlyI GAGTC 2 cut(s) 143, 1211
MmeI TCCRAC 2 cut(s) 118, 153
MroXI GAANNNNTTC 1 cut(s) 1133
MseI TTAA 4 cut(s) 14, 189, 335, 1539
MslI CAYNNNNRTG 2 cut(s) 468, 1296
MspI CCGG 2 cut(s) 530, 764
MspR9I CCNGG 1 cut(s) 745
MvaI CCWGG 1 cut(s) 745
MvnI CGCG 5 cut(s) 32, 455, 672, 674, 1430
MwoI GCNNNNNNNGC 2 cut(s) 328, 988
NdeI CATATG 1 cut(s) 1365
NdeII GATC 9 cut(s) 399, 426, 498, 639, 868, 1047, 1424, 1447, 1552
NlaIII CATG 3 cut(s) 353, 1399, 1577
NlaIV GGNNCC 3 cut(s) 500, 580, 768
NmeAIII GCCGAG 1 cut(s) 939
NmuCI GTSAC 2 cut(s) 563, 793
OliI CACNNNNGTG 1 cut(s) 468
PagI TCATGA 1 cut(s) 349
PaqCI CACCTGC 1 cut(s) 973
PceI AGGCCT 1 cut(s) 363
PciSI GCTCTTC 2 cut(s) 908, 1155
PcsI WCGNNNNNNNCGW 3 cut(s) 126, 282, 1418
PdmI GAANNNNTTC 1 cut(s) 1133
PfeI GAWTC 3 cut(s) 667, 703, 1237
Pfl23II CGTACG 1 cut(s) 1431
PflMI CCANNNNNTGG 1 cut(s) 1010
PkrI GCNGC 3 cut(s) 270, 295, 676
PleI GAGTC 2 cut(s) 143, 1211
PpsI GAGTC 2 cut(s) 143, 1211
Ppu21I YACGTR 1 cut(s) 1435
PshBI ATTAAT 1 cut(s) 14
Psp6I CCWGG 1 cut(s) 743
PspGI CCWGG 1 cut(s) 743
PspLI CGTACG 1 cut(s) 1431
PspN4I GGNNCC 3 cut(s) 500, 580, 768
PsuI RGATCY 4 cut(s) 498, 868, 1424, 1447
RsaI GTAC 4 cut(s) 833, 944, 1064, 1433
RsaNI GTAC 4 cut(s) 832, 943, 1063, 1432
RseI CAYNNNNRTG 2 cut(s) 468, 1296
SalI GTCGAC 2 cut(s) 119, 404
SapI GCTCTTC 2 cut(s) 908, 1155
SaqAI TTAA 4 cut(s) 14, 189, 335, 1539
SatI GCNGC 3 cut(s) 269, 294, 675
Sau3AI GATC 9 cut(s) 399, 426, 498, 639, 868, 1047, 1424, 1447, 1552
SchI GAGTC 2 cut(s) 143, 1211
ScrFI CCNGG 1 cut(s) 745
SfaNI GCATC 6 cut(s) 222, 564, 585, 622, 978, 1471
SfcI CTRYAG 2 cut(s) 1441, 1590
SmiMI CAYNNNNRTG 2 cut(s) 468, 1296
SmlI CTYRAG 2 cut(s) 806, 1598
SmoI CTYRAG 2 cut(s) 806, 1598
Sse9I AATT 6 cut(s) 953, 1129, 1167, 1263, 1516, 1561
SseBI AGGCCT 1 cut(s) 363
SsiI CCGC 9 cut(s) 269, 294, 331, 342, 533, 561, 576, 674, 1428
SspMI CTAG 4 cut(s) 116, 551, 636, 1208
StuI AGGCCT 1 cut(s) 363
StyD4I CCNGG 1 cut(s) 743
StyI CCWWGG 2 cut(s) 550, 946
TaaI ACNGT 3 cut(s) 524, 784, 793
TaiI ACGT 6 cut(s) 209, 288, 375, 627, 693, 1437
TaqI TCGA 9 cut(s) 120, 264, 405, 630, 706, 861, 935, 1107, 1412
TasI AATT 6 cut(s) 953, 1129, 1167, 1263, 1516, 1561
TatI WGTACW 2 cut(s) 831, 1062
TauI GCSGC 3 cut(s) 271, 296, 677
TfiI GAWTC 3 cut(s) 667, 703, 1237
Tru1I TTAA 4 cut(s) 14, 189, 335, 1539
Tru9I TTAA 4 cut(s) 14, 189, 335, 1539
TscAI CASTG 2 cut(s) 436, 1090
TseFI GTSAC 2 cut(s) 563, 793
Tsp45I GTSAC 2 cut(s) 563, 793
TspDTI ATGAA 4 cut(s) 32, 247, 1478, 1590
TspGWI ACGGA 3 cut(s) 212, 831, 869
TspRI CASTG 2 cut(s) 436, 1090
Van91I CCANNNNNTGG 1 cut(s) 1010
VspI ATTAAT 1 cut(s) 14
XagI CCTNNNNNAGG 1 cut(s) 1245
XapI RAATTY 2 cut(s) 1263, 1561
XbaI TCTAGA 1 cut(s) 1207
XcmI CCANNNNNNNNNTGG 1 cut(s) 1230
XmaJI CCTAGG 1 cut(s) 550
XmiI GTMKAC 2 cut(s) 120, 405
XmnI GAANNNNTTC 1 cut(s) 1133
XspI CTAG 4 cut(s) 116, 551, 636, 1208
ZraI GACGTC 1 cut(s) 207
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.