Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003564

Physical Location & Seq

Genomic Coordinates Reverse (-)

12191368 .. 12192367

Gene Structure 1000 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ29789

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGCAGCTTTCAAACTCTTCAGTTTTTTTCATGTTTCTTTTTGTATTGTTATCATCTTCATCGGCAAAACCACCGTCTTCAAAACAAAACAGTTTTCTCCAATGCCTCTCATATCATTTTAAGGATTCTATTCCATTCTCTAGTACCTTTTTCACCCCAAACAGTTCTGCTTTCACTACCGTCCTAAATTCAACTGCACAAAACCTCAGGTACTTGGTCCCTTCAAAGCCAAAGCCAGAGTTCATTTTCACACGAACGCATGATTCCCAAATTCAAGCTGGAGCCACTATTGGTGAAGTTTACTACAGAATTGCAGAGAAAAGCAGAACCCATGGCTTTCCAGCTGGTCTTTACAGAAGTTTAGGTGTTGGAGGCCATATAACTGGAGGTGCATATGGTACCATGATGAGGAAATATGGCCTCGCAGCTGTTAACGTCCTGGATGCCCGAATAGTTGATGTCAAAGGCAGAATTCTTGACCGAAAGACCATGGGAGCAGACCTGTTTTGGGCAATCAGAGGTGGTGGAGGAGCAAGCTTTGGAGTCATCCTGTGGTGGAAGATAAAGTTGGTTCCTGTTCCATCAACTATGACAGTTTTTACAGTTTCCAAGACCTTGGAACAAGGGGCCACAAAGCTCCTCCATAGATGGCAACAAGTAGCTACTACTAAGCTTGATAAAGATCTCAATATAAGAGTTCTGATACAACCAACAGTAGTTGACAGTATAAGTGGCAAGAGAACTGTCACAACTCTTTACCAAGGTCAATTCCTTGGAGGTGTTAAAAGGCGCTCCTCAATGTTATGCAAACAGGGTTCCCCGAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000741 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005623 GO:0005911 GO:0006950 GO:0006979 GO:0006996 GO:0006997 GO:0007275 GO:0008150 GO:0008152 GO:0009506 GO:0009553 GO:0009559 GO:0009561 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010197 GO:0016043 GO:0016491 GO:0016614 GO:0016616 GO:0022414 GO:0030054 GO:0030154 GO:0030312 GO:0032501 GO:0032502 GO:0044464 GO:0045551 GO:0048229 GO:0048284 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050268 GO:0050896 GO:0055044 GO:0055114 GO:0061458 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

BBE FAD_binding_4

Protein Analysis

275

Amino Acids

30.29

Weight (kDa)

10.26

Isoelectric Point (pI)

39.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAD_binding_4	PF01565	90 - 159	2.4e-10	FAD binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003564)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30760 AT1G30760 AT2G34790 AT5G44390 AT5G44400
fragaria_vesca	FvH4_3g10920
malus_domestica	MD05G1268400.v1.1 MD05G1268500.v1.1 MD10G1244500.v1.1
prunus_persica	Prupe.4G096300_v2.0.a1 Prupe.4G096400_v2.0.a1
pyrus_communis	pycom05g25130 pycom05g25140 pycom10g20500
rosa_chinensis	RchiOBHm_Chr5g0017561 RchiOBHm_Chr5g0017591 RchiOBHm_Chr5g0017601 RchiOBHm_Chr5g0017621 RchiOBHm_Chr5g0017641
rosa_laevigata	RLG00000032298 RLG00000032301 RLG00000032302
rosa_multiflora	Rmu_sc0000346.1_g000021 Rmu_sc0000346.1_g000022 Rmu_sc0002565.1_g000007 Rmu_sc0003415.1_g000020
rosa_roxburghii	Rroxscaffold_1G00059870 Rroxscaffold_1G00059880 Rroxscaffold_1G00059890
rosa_rugosa	Rorug05G0036900 Rorug05G0037000 Rorug05G0037100
rosa_wichuraiana	Rw5G011310 Rw5G011320 Rw5G011330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	398
AccB1I	GGYRCC	1 cut(s)	398
AcsI	RAATTY	3 cut(s)	187, 270, 471
AfaI	GTAC	3 cut(s)	145, 212, 400
AfiI	CCNNNNNNNGG	2 cut(s)	408, 508
AgsI	TTSAA	5 cut(s)	12, 81, 192, 225, 275
AjnI	CCWGG	1 cut(s)	438
AjuI	GAANNNNNNNTTGG	2 cut(s)	551, 583
AluBI	AGCT	8 cut(s)	7, 278, 344, 428, 537, 637, 662, 673
AluI	AGCT	8 cut(s)	7, 278, 344, 428, 537, 637, 662, 673
AoxI	GGCC	3 cut(s)	373, 418, 627
ApeKI	GCWGC	2 cut(s)	4, 425
ApoI	RAATTY	3 cut(s)	187, 270, 471
ArsI	GACNNNNNNTTYG	2 cut(s)	59, 91
Asp718I	GGTACC	1 cut(s)	398
AspLEI	GCGC	1 cut(s)	792
AspS9I	GGNCC	2 cut(s)	217, 627
AsuHPI	GGTGA	2 cut(s)	145, 305
AvaII	GGWCC	1 cut(s)	217
AxyI	CCTNAGG	1 cut(s)	206
BanI	GGYRCC	1 cut(s)	398
BbsI	GAAGAC	1 cut(s)	69
BbvI	GCAGC	2 cut(s)	16, 437
BccI	CCATC	2 cut(s)	589, 642
BciT130I	CCWGG	1 cut(s)	440
BfaI	CTAG	1 cut(s)	141
BfmI	CTRYAG	1 cut(s)	304
BfoI	RGCGCY	1 cut(s)	793
BglII	AGATCT	1 cut(s)	682
BisI	GCNGC	2 cut(s)	5, 426
BlsI	GCNGC	2 cut(s)	6, 427
Bme1390I	CCNGG	1 cut(s)	440
Bme18I	GGWCC	1 cut(s)	217
BmgT120I	GGNCC	2 cut(s)	217, 627
BmiI	GGNNCC	6 cut(s)	219, 283, 400, 573, 628, 817
BmrFI	CCNGG	1 cut(s)	440
BmsI	GCATC	1 cut(s)	433
BpiI	GAAGAC	1 cut(s)	69
BpmI	CTGGAG	2 cut(s)	300, 405
BsaBI	GATNNNNATC	1 cut(s)	681
BsaJI	CCNNGG	5 cut(s)	331, 489, 615, 760, 772
Bsc4I	CCNNNNNNNGG	2 cut(s)	408, 508
Bse1I	ACTGG	1 cut(s)	388
Bse21I	CCTNAGG	1 cut(s)	206
Bse8I	GATNNNNATC	1 cut(s)	681
BseBI	CCWGG	1 cut(s)	440
BseDI	CCNNGG	5 cut(s)	331, 489, 615, 760, 772
BseGI	GGATG	2 cut(s)	448, 546
BseJI	GATNNNNATC	1 cut(s)	681
BseLI	CCNNNNNNNGG	2 cut(s)	408, 508
BseMII	CTCAG	1 cut(s)	220
BseNI	ACTGG	1 cut(s)	388
BseRI	GAGGAG	3 cut(s)	543, 629, 784
BseXI	GCAGC	2 cut(s)	16, 437
BsgI	GTGCAG	1 cut(s)	180
BshFI	GGCC	3 cut(s)	375, 420, 629
BshNI	GGYRCC	1 cut(s)	398
BslFI	GGGAC	1 cut(s)	203
BslI	CCNNNNNNNGG	2 cut(s)	408, 508
BsmFI	GGGAC	1 cut(s)	203
BsnI	GGCC	3 cut(s)	375, 420, 629
Bsp143I	GATC	1 cut(s)	682
Bsp19I	CCATGG	2 cut(s)	331, 489
BspANI	GGCC	3 cut(s)	375, 420, 629
BspCNI	CTCAG	1 cut(s)	219
BspLI	GGNNCC	6 cut(s)	219, 283, 400, 573, 628, 817
BspT107I	GGYRCC	1 cut(s)	398
BsrI	ACTGG	1 cut(s)	388
BssECI	CCNNGG	5 cut(s)	331, 489, 615, 760, 772
BssMI	GATC	1 cut(s)	682
BssT1I	CCWWGG	5 cut(s)	331, 489, 615, 760, 772
Bst2UI	CCWGG	1 cut(s)	440
Bst4CI	ACNGT	9 cut(s)	75, 92, 164, 181, 595, 604, 715, 725, 745
Bst6I	CTCTTC	1 cut(s)	22
BstC8I	GCNNGC	1 cut(s)	535
BstDEI	CTNAG	2 cut(s)	206, 669
BstDSI	CCRYGG	2 cut(s)	331, 489
BstF5I	GGATG	2 cut(s)	448, 546
BstH2I	RGCGCY	1 cut(s)	793
BstHHI	GCGC	1 cut(s)	792
BstKTI	GATC	1 cut(s)	685
BstMBI	GATC	1 cut(s)	682
BstNI	CCWGG	1 cut(s)	440
BstSCI	CCNGG	1 cut(s)	438
BstSFI	CTRYAG	1 cut(s)	304
BstV1I	GCAGC	2 cut(s)	16, 437
BstV2I	GAAGAC	1 cut(s)	69
BstX2I	RGATCY	1 cut(s)	682
BstXI	CCANNNNNNTGG	2 cut(s)	383, 616
BstYI	RGATCY	1 cut(s)	682
Bsu36I	CCTNAGG	1 cut(s)	206
BsuRI	GGCC	3 cut(s)	375, 420, 629
BtgI	CCRYGG	2 cut(s)	331, 489
BtsCI	GGATG	2 cut(s)	448, 546
Cac8I	GCNNGC	1 cut(s)	535
CfoI	GCGC	1 cut(s)	792
Cfr13I	GGNCC	2 cut(s)	217, 627
Csp6I	GTAC	3 cut(s)	144, 211, 399
CviAII	CATG	5 cut(s)	31, 260, 332, 403, 490
CviQI	GTAC	3 cut(s)	144, 211, 399
DdeI	CTNAG	2 cut(s)	206, 669
DpnI	GATC	1 cut(s)	684
DpnII	GATC	1 cut(s)	682
Eam1104I	CTCTTC	1 cut(s)	22
EarI	CTCTTC	1 cut(s)	22
Eco130I	CCWWGG	5 cut(s)	331, 489, 615, 760, 772
Eco47I	GGWCC	1 cut(s)	217
Eco81I	CCTNAGG	1 cut(s)	206
EcoRI	GAATTC	1 cut(s)	471
EcoRII	CCWGG	1 cut(s)	438
EcoT14I	CCWWGG	5 cut(s)	331, 489, 615, 760, 772
ErhI	CCWWGG	5 cut(s)	331, 489, 615, 760, 772
FaeI	CATG	5 cut(s)	34, 263, 335, 406, 493
FaqI	GGGAC	1 cut(s)	203
FatI	CATG	5 cut(s)	30, 259, 331, 402, 489
FauNDI	CATATG	1 cut(s)	394
Fnu4HI	GCNGC	2 cut(s)	5, 426
FokI	GGATG	2 cut(s)	455, 533
Fsp4HI	GCNGC	2 cut(s)	5, 426
FspBI	CTAG	1 cut(s)	141
GlaI	GCGC	1 cut(s)	791
GluI	GCNGC	2 cut(s)	5, 426
GsuI	CTGGAG	2 cut(s)	300, 405
HaeII	RGCGCY	1 cut(s)	793
HaeIII	GGCC	3 cut(s)	375, 420, 629
HhaI	GCGC	1 cut(s)	792
Hin1II	CATG	5 cut(s)	34, 263, 335, 406, 493
Hin6I	GCGC	1 cut(s)	790
HinP1I	GCGC	1 cut(s)	790
HincII	GTYRAC	2 cut(s)	433, 721
HindII	GTYRAC	2 cut(s)	433, 721
HindIII	AAGCTT	2 cut(s)	535, 671
HinfI	GANTC	3 cut(s)	125, 263, 543
HpaI	GTTAAC	1 cut(s)	433
HphI	GGTGA	2 cut(s)	145, 305
Hpy166II	GTNNAC	3 cut(s)	301, 433, 721
Hpy188I	TCNGA	2 cut(s)	518, 702
Hpy188III	TCNNGA	1 cut(s)	476
Hpy8I	GTNNAC	3 cut(s)	301, 433, 721
HpyAV	CCTTC	1 cut(s)	231
HpyCH4III	ACNGT	9 cut(s)	75, 92, 164, 181, 595, 604, 715, 725, 745
HpyCH4IV	ACGT	1 cut(s)	435
HpyCH4V	TGCA	5 cut(s)	4, 197, 314, 392, 807
HpyF3I	CTNAG	2 cut(s)	206, 669
HpySE526I	ACGT	1 cut(s)	435
Hsp92II	CATG	5 cut(s)	34, 263, 335, 406, 493
HspAI	GCGC	1 cut(s)	790
KpnI	GGTACC	1 cut(s)	402
KspAI	GTTAAC	1 cut(s)	433
Kzo9I	GATC	1 cut(s)	682
LmnI	GCTCC	5 cut(s)	281, 494, 530, 642, 797
Lsp1109I	GCAGC	2 cut(s)	16, 437
LweI	GCATC	1 cut(s)	433
MaeI	CTAG	1 cut(s)	141
MaeII	ACGT	1 cut(s)	435
MaeIII	GTNAC	1 cut(s)	745
MalI	GATC	1 cut(s)	684
MboI	GATC	1 cut(s)	682
MboII	GAAGA	4 cut(s)	9, 48, 69, 571
MflI	RGATCY	1 cut(s)	682
MluCI	AATT	5 cut(s)	187, 270, 309, 471, 767
MlyI	GAGTC	1 cut(s)	552
MmeI	TCCRAC	1 cut(s)	349
MseI	TTAA	3 cut(s)	120, 432, 783
MspA1I	CMGCKG	2 cut(s)	344, 428
MspR9I	CCNGG	1 cut(s)	440
MvaI	CCWGG	1 cut(s)	440
NcoI	CCATGG	2 cut(s)	331, 489
NdeI	CATATG	1 cut(s)	394
NdeII	GATC	1 cut(s)	682
NlaIII	CATG	5 cut(s)	34, 263, 335, 406, 493
NlaIV	GGNNCC	6 cut(s)	219, 283, 400, 573, 628, 817
NmuCI	GTSAC	1 cut(s)	745
PfeI	GAWTC	2 cut(s)	125, 263
PfoI	TCCNGGA	1 cut(s)	438
PkrI	GCNGC	2 cut(s)	6, 427
PleI	GAGTC	1 cut(s)	551
PpsI	GAGTC	1 cut(s)	551
Psp6I	CCWGG	1 cut(s)	438
PspGI	CCWGG	1 cut(s)	438
PspN4I	GGNNCC	6 cut(s)	219, 283, 400, 573, 628, 817
PspPI	GGNCC	2 cut(s)	217, 627
PsuI	RGATCY	1 cut(s)	682
PvuII	CAGCTG	2 cut(s)	344, 428
RsaI	GTAC	3 cut(s)	145, 212, 400
RsaNI	GTAC	3 cut(s)	144, 211, 399
SaqAI	TTAA	3 cut(s)	120, 432, 783
SatI	GCNGC	2 cut(s)	5, 426
Sau3AI	GATC	1 cut(s)	682
Sau96I	GGNCC	2 cut(s)	217, 627
SchI	GAGTC	1 cut(s)	552
ScrFI	CCNGG	1 cut(s)	440
SfaNI	GCATC	1 cut(s)	433
SfcI	CTRYAG	1 cut(s)	304
SinI	GGWCC	1 cut(s)	217
Sse9I	AATT	5 cut(s)	187, 270, 309, 471, 767
SspMI	CTAG	1 cut(s)	141
StyD4I	CCNGG	1 cut(s)	438
StyI	CCWWGG	5 cut(s)	331, 489, 615, 760, 772
TaaI	ACNGT	9 cut(s)	75, 92, 164, 181, 595, 604, 715, 725, 745
TaiI	ACGT	1 cut(s)	438
TaqII	GACCGA	1 cut(s)	495
TasI	AATT	5 cut(s)	187, 270, 309, 471, 767
TfiI	GAWTC	2 cut(s)	125, 263
Tru1I	TTAA	3 cut(s)	120, 432, 783
Tru9I	TTAA	3 cut(s)	120, 432, 783
TseFI	GTSAC	1 cut(s)	745
TseI	GCWGC	2 cut(s)	4, 425
Tsp45I	GTSAC	1 cut(s)	745
TspDTI	ATGAA	3 cut(s)	19, 48, 232
VpaK11BI	GGWCC	1 cut(s)	217
XapI	RAATTY	3 cut(s)	187, 270, 471
XcmI	CCANNNNNNNNNTGG	1 cut(s)	275
XspI	CTAG	1 cut(s)	141

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.