AT5G44390

Belongs to the oxygen-dependent FAD-linked oxidoreductase family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Reverse (-)
17882079 .. 17885012
2934 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G44390.1

Sequence Viewer

Length: 1629 bp
ATGGGAAATTCAAAACCACTCCCTACAATTTCTTGTATTTCAGTTTTTGCTCTATATTTTTCATTCTACACAATAACACTAACTTCTTCAACCTCCCTACAAGATGATTTCATCAAATGTCTTTACCGAAACACAAATGTCCGTTTTACACTCGACAAAACGTTCTTCACTCCTGAAAGAAACGCTTCCATCTTCACAGAAGTTCTTGAATCGACGGCTCAGAATCAAAGATACTTGACCAAGACAATGCCTAAACCGGGTTTCATATTTAAACCGGTTCACGAATCTCACGTCCAAGCTTCCGTCATCTGTTCCAAGAAACTTGAGATACATTTTCGTGTCAGAAGCGGCGGTCATGATTACGAGGGCGTGTCTTATGTTTCACAGATCGAAAAACCTTTTGTATTGATCGATTTGTCGAAATTGAGACAGATCAATGTTGATATTAAGGACACCAGTGCTTGGGTTGAAGCTGGTGCTACCGTTGGTGAGCTTTACTACAGAATTGCAGAGAAGAGCAAGTTTCATGGATTCCCTGCAGGTGTTTACCCGAGCTTAGGCATCGGTGGGCATATAACAGGCGGTGCATACGGTTCCTTGATGAGGAAGTATGGTCTTGCTGCAGATAATGTTCTAGACGCAAAGATCGTTGATGCTAACGGTAAATTACTCGATAGAGCCTCGATGGGCGAGGATCTGTTTTGGGCAATTAGAGGAGGCAGTGGAGGGAGTTTTGGGATAATTTTGTCATGGAAAATCAAGCTTGTTCCTGTTCCTGAAACCCTAACCGTCTTCACGGTCACCAAAACATTCGAGCAAGATAGAAGTTTCAAGATTCTTTCAAAGTGGCAAGAAATTGCGGACAATCTTGTTGATGAGCTCTTCTTACGAGTGTTCTTCACTGTATCTGGAAACAAAGCAAACAAGACAGTGACGATGGCCTACATAGGTCAGTTTCTTGGCGAGAAAGGCACCTTGATGGAGGTAATGAAGAAGGATTTTCCAGAACTTGGGCTAACTCAGAAGGATTGTATAGAAATGAGTTGGATCGATTCCATTATTTACAACTCTGGATTCCCAACAAACCCTCCTCCTCCTATTGAGATTCTGCTTCAAGCAAAGTCTCCAATCGGAAAAGTTTACTTCAAAGGGAAATCGGATTTCGCTAAAAAACCTATTCCTGTTTTAGGGCTCGAAGGGATGTTCAAGAAGTTGCTTGAAGAAGACGCAGCGTTAGTAATTTGGACTCCTTACGGTGGAAAGATGGATAAAATCCCTGAATCTGAGATCCCATTTCCGCATAGAAACGGAACCAACTTCATGATTCAATATTACAGGAGCTGGTCAGATAGTGAGAAAAGACCAAACAGACGCACCAAATGGATCAGAGAGTTGTACGGATACATGACGCCTTACGTCTCAAGCAATCCAAGACAAGCATATGTGAACTACAGAGATCTAGACCTGGGACAGAACAAGGACAACTCAAAGTCTAACTTCATAGAAGCTAAAATATGGGGAGCTAATTATTTCAAAGACAATTTCAACAGATTGGTGAGGATTAAATCAAAGGTTGATCCAGATAACTTCTTCAGACACGAGCAGAGTATCCCAACTCTGCCCGTATGA

Protein Analysis

542

Amino Acids

61.48

Weight (kDa)

9.16

Isoelectric Point (pI)

31.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAD_binding_4 PF01565 88 - 224 3.2e-25 FAD binding domain
BBE PF08031 480 - 538 7.8e-21 Berberine and berberine like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 530
Acc36I ACCTGC 1 cut(s) 530
AccB1I GGYRCC 1 cut(s) 971
AccB7I CCANNNNNTGG 2 cut(s) 462, 1010
AciI CCGC 5 cut(s) 348, 351, 582, 860, 1298
AclI AACGTT 1 cut(s) 161
AclWI GGATC 5 cut(s) 702, 1055, 1282, 1391, 1571
AcsI RAATTY 1 cut(s) 7
AcuI CTGAAG 1 cut(s) 1576
AcyI GRCGYC 1 cut(s) 1409
AfaI GTAC 1 cut(s) 1397
AfiI CCNNNNNNNGG 7 cut(s) 257, 462, 557, 603, 1010, 1187, 1256
AgeI ACCGGT 1 cut(s) 274
AjiI CACGTC 1 cut(s) 292
AjnI CCWGG 1 cut(s) 1464
AluBI AGCT 9 cut(s) 299, 473, 493, 555, 763, 880, 1341, 1508, 1523
AluI AGCT 9 cut(s) 299, 473, 493, 555, 763, 880, 1341, 1508, 1523
Alw21I GWGCWC 1 cut(s) 882
Alw26I GTCTC 3 cut(s) 421, 1128, 1423
AlwI GGATC 5 cut(s) 702, 1055, 1282, 1391, 1571
AlwNI CAGNNNCTG 1 cut(s) 1341
Ama87I CYCGRG 1 cut(s) 550
AoxI GGCC 1 cut(s) 939
ApeKI GCWGC 2 cut(s) 620, 1229
ApoI RAATTY 1 cut(s) 7
ArsI GACNNNNNNTTYG 2 cut(s) 276, 308
AsiGI ACCGGT 1 cut(s) 274
Asp700I GAANNNNTTC 1 cut(s) 184
AsuC2I CCSGG 1 cut(s) 258
AsuHPI GGTGA 3 cut(s) 500, 793, 1567
AvaI CYCGRG 1 cut(s) 550
BanI GGYRCC 1 cut(s) 971
BanII GRGCYC 2 cut(s) 882, 1194
BauI CACGAG 1 cut(s) 1598
BbsI GAAGAC 2 cut(s) 784, 1230
Bbv12I GWGCWC 1 cut(s) 882
BbvI GCAGC 2 cut(s) 607, 1241
BccI CCATC 5 cut(s) 197, 679, 931, 973, 1258
BceAI ACGGC 1 cut(s) 231
BciT130I CCWGG 1 cut(s) 1466
BciVI GTATCC 2 cut(s) 1394, 1619
BcnI CCSGG 1 cut(s) 258
BcoDI GTCTC 3 cut(s) 421, 1128, 1423
BfaI CTAG 2 cut(s) 635, 1460
BfmI CTRYAG 4 cut(s) 499, 537, 621, 1450
BfuAI ACCTGC 1 cut(s) 530
BfuI GTATCC 2 cut(s) 1394, 1619
BglII AGATCT 1 cut(s) 1456
BisI GCNGC 3 cut(s) 349, 621, 1230
BlsI GCNGC 3 cut(s) 350, 622, 1231
Bme1390I CCNGG 2 cut(s) 258, 1466
BmeT110I CYCGRG 1 cut(s) 550
BmgBI CACGTC 1 cut(s) 292
BmiI GGNNCC 3 cut(s) 595, 973, 1312
BmrFI CCNGG 2 cut(s) 258, 1466
BmsI GCATC 2 cut(s) 570, 643
BpiI GAAGAC 2 cut(s) 784, 1230
Bpu10I CCTNAGC 1 cut(s) 556
BpuEI CTTGAG 2 cut(s) 344, 1405
BpuMI CCSGG 1 cut(s) 258
Bsa29I ATCGAT 2 cut(s) 411, 1050
BsaHI GRCGYC 1 cut(s) 1409
BsaJI CCNNGG 1 cut(s) 1465
BsaWI WCCGGW 1 cut(s) 274
BsaXI ACNNNNNCTCC 2 cut(s) 1072, 1102
Bsc4I CCNNNNNNNGG 7 cut(s) 257, 462, 557, 603, 1010, 1187, 1256
Bse118I RCCGGY 1 cut(s) 274
Bse1I ACTGG 1 cut(s) 456
BseBI CCWGG 1 cut(s) 1466
BseCI ATCGAT 2 cut(s) 411, 1050
BseDI CCNNGG 1 cut(s) 1465
BseGI GGATG 1 cut(s) 1206
BseLI CCNNNNNNNGG 7 cut(s) 257, 462, 557, 603, 1010, 1187, 1256
BseMII CTCAG 3 cut(s) 233, 1034, 1275
BseNI ACTGG 1 cut(s) 456
BseRI GAGGAG 3 cut(s) 729, 1080, 1083
BseXI GCAGC 2 cut(s) 607, 1241
BshFI GGCC 1 cut(s) 941
BshNI GGYRCC 1 cut(s) 971
BshTI ACCGGT 1 cut(s) 274
BshVI ATCGAT 2 cut(s) 411, 1050
BsiHKAI GWGCWC 1 cut(s) 882
BsiHKCI CYCGRG 1 cut(s) 550
BsiSI CCGG 2 cut(s) 257, 275
BslFI GGGAC 1 cut(s) 1482
BslI CCNNNNNNNGG 7 cut(s) 257, 462, 557, 603, 1010, 1187, 1256
BsmAI GTCTC 3 cut(s) 421, 1128, 1423
BsmBI CGTCTC 1 cut(s) 1423
BsmFI GGGAC 1 cut(s) 1482
BsnI GGCC 1 cut(s) 941
BsoBI CYCGRG 1 cut(s) 550
Bsp1286I GDGCHC 2 cut(s) 882, 1194
BspACI CCGC 5 cut(s) 348, 351, 582, 860, 1298
BspANI GGCC 1 cut(s) 941
BspCNI CTCAG 3 cut(s) 232, 1033, 1276
BspDI ATCGAT 2 cut(s) 411, 1050
BspHI TCATGA 2 cut(s) 355, 1320
BspLI GGNNCC 3 cut(s) 595, 973, 1312
BspMAI CTGCAG 2 cut(s) 541, 625
BspMI ACCTGC 1 cut(s) 530
BspPI GGATC 5 cut(s) 702, 1055, 1282, 1391, 1571
BspQI GCTCTTC 2 cut(s) 509, 887
BspT107I GGYRCC 1 cut(s) 971
BsrFI RCCGGY 1 cut(s) 274
BsrI ACTGG 1 cut(s) 456
BssAI RCCGGY 1 cut(s) 274
BssECI CCNNGG 1 cut(s) 1465
BssNI GRCGYC 1 cut(s) 1409
BssSI CACGAG 1 cut(s) 1598
Bst2BI CACGAG 1 cut(s) 1598
Bst2UI CCWGG 1 cut(s) 1466
Bst4CI ACNGT 8 cut(s) 484, 593, 662, 790, 799, 904, 931, 1256
Bst6I CTCTTC 2 cut(s) 509, 887
BstACI GRCGYC 1 cut(s) 1409
BstDEI CTNAG 4 cut(s) 219, 556, 1020, 1284
BstEII GGTNACC 1 cut(s) 799
BstENI CCTNNNNNAGG 2 cut(s) 601, 1185
BstF5I GGATG 1 cut(s) 1206
BstMAI GTCTC 3 cut(s) 421, 1128, 1423
BstMWI GCNNNNNNNGC 1 cut(s) 969
BstNI CCWGG 1 cut(s) 1466
BstPI GGTNACC 1 cut(s) 799
BstSCI CCNGG 2 cut(s) 256, 1464
BstSFI CTRYAG 4 cut(s) 499, 537, 621, 1450
BstV1I GCAGC 2 cut(s) 607, 1241
BstV2I GAAGAC 2 cut(s) 784, 1230
BstX2I RGATCY 3 cut(s) 694, 1287, 1456
BstYI RGATCY 3 cut(s) 694, 1287, 1456
Bsu15I ATCGAT 2 cut(s) 411, 1050
BsuI GTATCC 2 cut(s) 1394, 1619
BsuRI GGCC 1 cut(s) 941
BsuTUI ATCGAT 2 cut(s) 411, 1050
BtrI CACGTC 1 cut(s) 292
BtsCI GGATG 1 cut(s) 1206
BtsI GCAGTG 1 cut(s) 727
BtsIMutI CAGTG 4 cut(s) 463, 727, 900, 936
BveI ACCTGC 1 cut(s) 530
CaiI CAGNNNCTG 1 cut(s) 1341
CciI TCATGA 2 cut(s) 355, 1320
Cfr10I RCCGGY 1 cut(s) 274
ClaI ATCGAT 2 cut(s) 411, 1050
CseI GACGC 4 cut(s) 647, 1235, 1380, 1417
Csp6I GTAC 1 cut(s) 1396
CspAI ACCGGT 1 cut(s) 274
CviAII CATG 5 cut(s) 356, 527, 750, 1321, 1405
CviQI GTAC 1 cut(s) 1396
DdeI CTNAG 4 cut(s) 219, 556, 1020, 1284
DraI TTTAAA 1 cut(s) 271
Eam1104I CTCTTC 2 cut(s) 509, 887
EarI CTCTTC 2 cut(s) 509, 887
Ecl136II GAGCTC 1 cut(s) 880
Eco24I GRGCYC 2 cut(s) 882, 1194
Eco53kI GAGCTC 1 cut(s) 880
Eco57I CTGAAG 1 cut(s) 1576
Eco88I CYCGRG 1 cut(s) 550
Eco91I GGTNACC 1 cut(s) 799
EcoICRI GAGCTC 1 cut(s) 880
EcoNI CCTNNNNNAGG 2 cut(s) 601, 1185
EcoO65I GGTNACC 1 cut(s) 799
EcoRII CCWGG 1 cut(s) 1464
EcoT38I GRGCYC 2 cut(s) 882, 1194
Esp3I CGTCTC 1 cut(s) 1423
FaeI CATG 5 cut(s) 359, 530, 753, 1324, 1408
FalI AAGNNNNNCTT 4 cut(s) 169, 201, 1481, 1513
FaqI GGGAC 1 cut(s) 1482
FatI CATG 5 cut(s) 355, 526, 749, 1320, 1404
FauNDI CATATG 1 cut(s) 1441
Fnu4HI GCNGC 3 cut(s) 349, 621, 1230
FokI GGATG 1 cut(s) 1213
FriOI GRGCYC 2 cut(s) 882, 1194
Fsp4HI GCNGC 3 cut(s) 349, 621, 1230
FspBI CTAG 2 cut(s) 635, 1460
GluI GCNGC 3 cut(s) 349, 621, 1230
HaeIII GGCC 1 cut(s) 941
HapII CCGG 2 cut(s) 257, 275
HgaI GACGC 4 cut(s) 647, 1235, 1380, 1417
Hin1I GRCGYC 1 cut(s) 1409
Hin1II CATG 5 cut(s) 359, 530, 753, 1324, 1408
HindIII AAGCTT 2 cut(s) 297, 761
HpaII CCGG 2 cut(s) 257, 275
HphI GGTGA 3 cut(s) 500, 793, 1567
Hpy166II GTNNAC 4 cut(s) 280, 547, 1141, 1447
Hpy188I TCNGA 9 cut(s) 222, 344, 1023, 1133, 1159, 1285, 1348, 1388, 1595
Hpy8I GTNNAC 4 cut(s) 280, 547, 1141, 1447
Hpy99I CGWCG 1 cut(s) 217
HpyAV CCTTC 3 cut(s) 988, 1018, 1190
HpyCH4III ACNGT 8 cut(s) 484, 593, 662, 790, 799, 904, 931, 1256
HpyCH4IV ACGT 3 cut(s) 161, 291, 1416
HpyCH4V TGCA 4 cut(s) 509, 539, 587, 623
HpyF10VI GCNNNNNNNGC 1 cut(s) 969
HpyF3I CTNAG 4 cut(s) 219, 556, 1020, 1284
HpySE526I ACGT 3 cut(s) 161, 291, 1416
Hsp92I GRCGYC 1 cut(s) 1409
Hsp92II CATG 5 cut(s) 359, 530, 753, 1324, 1408
LguI GCTCTTC 2 cut(s) 509, 887
LmnI GCTCC 2 cut(s) 1338, 1520
Lsp1109I GCAGC 2 cut(s) 607, 1241
LweI GCATC 2 cut(s) 570, 643
MaeI CTAG 2 cut(s) 635, 1460
MaeII ACGT 3 cut(s) 161, 291, 1416
MaeIII GTNAC 2 cut(s) 799, 931
MflI RGATCY 3 cut(s) 694, 1287, 1456
MhlI GDGCHC 2 cut(s) 882, 1194
MlyI GAGTC 1 cut(s) 1240
MmeI TCCRAC 1 cut(s) 1025
MroXI GAANNNNTTC 1 cut(s) 184
MseI TTAA 3 cut(s) 270, 447, 1563
MslI CAYNNNNRTG 2 cut(s) 336, 977
MspI CCGG 2 cut(s) 257, 275
MspR9I CCNGG 2 cut(s) 258, 1466
MvaI CCWGG 1 cut(s) 1466
MwoI GCNNNNNNNGC 1 cut(s) 969
NciI CCSGG 1 cut(s) 258
NdeI CATATG 1 cut(s) 1441
NlaIII CATG 5 cut(s) 359, 530, 753, 1324, 1408
NlaIV GGNNCC 3 cut(s) 595, 973, 1312
NmuCI GTSAC 2 cut(s) 799, 931
PagI TCATGA 2 cut(s) 355, 1320
PaqCI CACCTGC 1 cut(s) 530
PciSI GCTCTTC 2 cut(s) 509, 887
PcsI WCGNNNNNNNCGW 2 cut(s) 288, 645
PdmI GAANNNNTTC 1 cut(s) 184
PflMI CCANNNNNTGG 2 cut(s) 462, 1010
PinAI ACCGGT 1 cut(s) 274
PkrI GCNGC 3 cut(s) 350, 622, 1231
PleI GAGTC 1 cut(s) 1240
PpsI GAGTC 1 cut(s) 1240
Psp124BI GAGCTC 1 cut(s) 882
Psp1406I AACGTT 1 cut(s) 161
Psp6I CCWGG 1 cut(s) 1464
PspEI GGTNACC 1 cut(s) 799
PspGI CCWGG 1 cut(s) 1464
PspN4I GGNNCC 3 cut(s) 595, 973, 1312
PstI CTGCAG 2 cut(s) 541, 625
PstNI CAGNNNCTG 1 cut(s) 1341
PsuI RGATCY 3 cut(s) 694, 1287, 1456
RsaI GTAC 1 cut(s) 1397
RsaNI GTAC 1 cut(s) 1396
RseI CAYNNNNRTG 2 cut(s) 336, 977
SacI GAGCTC 1 cut(s) 882
SapI GCTCTTC 2 cut(s) 509, 887
SaqAI TTAA 3 cut(s) 270, 447, 1563
SatI GCNGC 3 cut(s) 349, 621, 1230
SbfI CCTGCAGG 1 cut(s) 541
SchI GAGTC 1 cut(s) 1240
ScrFI CCNGG 2 cut(s) 258, 1466
SdaI CCTGCAGG 1 cut(s) 541
SduI GDGCHC 2 cut(s) 882, 1194
SfaNI GCATC 2 cut(s) 570, 643
SfcI CTRYAG 4 cut(s) 499, 537, 621, 1450
SmiMI CAYNNNNRTG 2 cut(s) 336, 977
SmlI CTYRAG 2 cut(s) 323, 1420
SmoI CTYRAG 2 cut(s) 323, 1420
Sse8387I CCTGCAGG 1 cut(s) 541
SsiI CCGC 5 cut(s) 348, 351, 582, 860, 1298
SspI AATATT 1 cut(s) 1331
SspMI CTAG 2 cut(s) 635, 1460
SstI GAGCTC 1 cut(s) 882
StyD4I CCNGG 2 cut(s) 256, 1464
TaaI ACNGT 8 cut(s) 484, 593, 662, 790, 799, 904, 931, 1256
TaiI ACGT 3 cut(s) 164, 294, 1419
TauI GCSGC 1 cut(s) 351
Tru1I TTAA 3 cut(s) 270, 447, 1563
Tru9I TTAA 3 cut(s) 270, 447, 1563
TscAI CASTG 4 cut(s) 463, 727, 907, 936
TseFI GTSAC 2 cut(s) 799, 931
TseI GCWGC 2 cut(s) 620, 1229
Tsp45I GTSAC 2 cut(s) 799, 931
TspDTI ATGAA 7 cut(s) 51, 100, 253, 515, 1004, 1309, 1489
TspGWI ACGGA 4 cut(s) 131, 292, 1323, 1413
TspRI CASTG 4 cut(s) 463, 727, 907, 936
Van91I CCANNNNNTGG 2 cut(s) 462, 1010
XagI CCTNNNNNAGG 2 cut(s) 601, 1185
XapI RAATTY 1 cut(s) 7
XbaI TCTAGA 2 cut(s) 634, 1459
XmnI GAANNNNTTC 1 cut(s) 184
XspI CTAG 2 cut(s) 635, 1460
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.