Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0003564

Physical Location & Seq

Genomic Coordinates Forward (+)

26624143 .. 26625313

Gene Structure 1171 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g25140.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGTACATAGCAGGGTACCCAAGTTCGACCCCACCTGAGGTTTTGCTTCAAGGAAAATCCACATTCAAGAACTACTTCAAAGCCAAATCAGACTTTGTCAAATACCCAATTCCTGAAAGTGGGCTTGAAGGGTTTTGGAAGAGGCTGATGCAGGAAGAGTCTCCTCTAGTAATTTTGACCCCATATGGGGGAATGGTGAGCAGGATTTCAGAGAGTGCAATCCCCTTCCCCCACAGAAAAGTTATCTTCAAAGTCCAGTACCTGACCGCATGGCAGGATGGGAAAGAAGATCAAAACAAACATATGGACTGGATCAGAAAGCTTTACAATTACATGACCCCTTATGTCACAATGTTTCCAAGGCAGGCATACGTGAATTATAGGGATCTTGATTTGGGGGTTAACAAGAAAAGCAACGTAAGCTTCATTGAGGCAAGTGATTGGGGGAAAAGGTATTTCATGGACAACTTCAAGAGGTTGATTGAGATAAAGACCGAAGTGGATCCTGATAATTTTTTCAGGCATGAACAAAGCATCCCTCCTCTCCCACCCTCTTCAAGATCTAGAACTTCTCCAGGCCATCACCATAGAACAGAGAACAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005829 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0006979 GO:0008150 GO:0008152 GO:0009505 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0016020 GO:0016491 GO:0016614 GO:0016899 GO:0030054 GO:0030312 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048046 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0055114 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

BBE FAD_binding_4

Protein Analysis

202

Amino Acids

23.6

Weight (kDa)

9.34

Isoelectric Point (pI)

54.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003564)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30760 AT1G30760 AT2G34790 AT5G44390 AT5G44400
fragaria_vesca	FvH4_3g10920
malus_domestica	MD05G1268400.v1.1 MD05G1268500.v1.1 MD10G1244500.v1.1
prunus_persica	Prupe.4G096300_v2.0.a1 Prupe.4G096400_v2.0.a1
pyrus_communis	pycom05g25130 pycom05g25140 pycom10g20500
rosa_chinensis	RchiOBHm_Chr5g0017561 RchiOBHm_Chr5g0017591 RchiOBHm_Chr5g0017601 RchiOBHm_Chr5g0017621 RchiOBHm_Chr5g0017641
rosa_laevigata	RLG00000032298 RLG00000032301 RLG00000032302
rosa_multiflora	Rmu_sc0000346.1_g000021 Rmu_sc0000346.1_g000022 Rmu_sc0002565.1_g000007 Rmu_sc0003415.1_g000020
rosa_roxburghii	Rroxscaffold_1G00059870 Rroxscaffold_1G00059880 Rroxscaffold_1G00059890
rosa_rugosa	Rorug05G0036900 Rorug05G0037000 Rorug05G0037100
rosa_wichuraiana	Rw5G011310 Rw5G011320 Rw5G011330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	15
AccB1I	GGYRCC	1 cut(s)	15
AciI	CCGC	1 cut(s)	267
AclWI	GGATC	4 cut(s)	320, 393, 497, 510
AfaI	GTAC	3 cut(s)	5, 17, 260
AfiI	CCNNNNNNNGG	5 cut(s)	37, 119, 186, 187, 188
AgsI	TTSAA	7 cut(s)	50, 67, 79, 128, 250, 472, 558
AjnI	CCWGG	1 cut(s)	574
AloI	GAACNNNNNNTCC	2 cut(s)	519, 551
AluBI	AGCT	3 cut(s)	322, 423, 603
AluI	AGCT	3 cut(s)	322, 423, 603
Alw26I	GTCTC	1 cut(s)	165
AlwI	GGATC	4 cut(s)	320, 393, 497, 510
AlwNI	CAGNNNCTG	1 cut(s)	262
AoxI	GGCC	1 cut(s)	577
Asp700I	GAANNNNTTC	1 cut(s)	74
Asp718I	GGTACC	1 cut(s)	15
AsuHPI	GGTGA	2 cut(s)	208, 575
AxyI	CCTNAGG	1 cut(s)	36
BaeI	ACNNNNGTAYC	2 cut(s)	7, 40
BamHI	GGATCC	1 cut(s)	502
BanI	GGYRCC	1 cut(s)	15
BccI	CCATC	2 cut(s)	272, 588
BciT130I	CCWGG	1 cut(s)	576
BcoDI	GTCTC	1 cut(s)	165
BfaI	CTAG	3 cut(s)	167, 564, 604
BglII	AGATCT	1 cut(s)	560
Bme1390I	CCNGG	1 cut(s)	576
BmiI	GGNNCC	2 cut(s)	17, 504
BmrFI	CCNGG	1 cut(s)	576
BmsI	GCATC	2 cut(s)	138, 543
BpmI	CTGGAG	1 cut(s)	558
BsaAI	YACGTR	1 cut(s)	373
BsaJI	CCNNGG	1 cut(s)	359
Bsc4I	CCNNNNNNNGG	5 cut(s)	37, 119, 186, 187, 188
Bse1I	ACTGG	2 cut(s)	256, 314
Bse21I	CCTNAGG	1 cut(s)	36
BseBI	CCWGG	1 cut(s)	576
BseDI	CCNNGG	1 cut(s)	359
BseGI	GGATG	2 cut(s)	283, 534
BseLI	CCNNNNNNNGG	5 cut(s)	37, 119, 186, 187, 188
BseMII	CTCAG	1 cut(s)	27
BseNI	ACTGG	2 cut(s)	256, 314
BseRI	GAGGAG	2 cut(s)	153, 531
BshFI	GGCC	1 cut(s)	579
BshNI	GGYRCC	1 cut(s)	15
BslI	CCNNNNNNNGG	5 cut(s)	37, 119, 186, 187, 188
BsmAI	GTCTC	1 cut(s)	165
BsnI	GGCC	1 cut(s)	579
Bsp1407I	TGTACA	1 cut(s)	3
Bsp143I	GATC	5 cut(s)	289, 312, 385, 502, 560
BspACI	CCGC	1 cut(s)	267
BspANI	GGCC	1 cut(s)	579
BspCNI	CTCAG	1 cut(s)	28
BspLI	GGNNCC	2 cut(s)	17, 504
BspPI	GGATC	4 cut(s)	320, 393, 497, 510
BspT107I	GGYRCC	1 cut(s)	15
BsrGI	TGTACA	1 cut(s)	3
BsrI	ACTGG	2 cut(s)	256, 314
BssECI	CCNNGG	1 cut(s)	359
BssMI	GATC	5 cut(s)	289, 312, 385, 502, 560
BssT1I	CCWWGG	1 cut(s)	359
Bst2UI	CCWGG	1 cut(s)	576
Bst6I	CTCTTC	3 cut(s)	134, 150, 559
BstAUI	TGTACA	1 cut(s)	3
BstBAI	YACGTR	1 cut(s)	373
BstC8I	GCNNGC	1 cut(s)	366
BstDEI	CTNAG	1 cut(s)	36
BstF5I	GGATG	2 cut(s)	283, 534
BstKTI	GATC	5 cut(s)	292, 315, 388, 505, 563
BstMAI	GTCTC	1 cut(s)	165
BstMBI	GATC	5 cut(s)	289, 312, 385, 502, 560
BstMWI	GCNNNNNNNGC	1 cut(s)	420
BstNI	CCWGG	1 cut(s)	576
BstSCI	CCNGG	1 cut(s)	574
BstX2I	RGATCY	3 cut(s)	385, 502, 560
BstYI	RGATCY	3 cut(s)	385, 502, 560
Bsu36I	CCTNAGG	1 cut(s)	36
BsuRI	GGCC	1 cut(s)	579
BtsCI	GGATG	2 cut(s)	283, 534
Cac8I	GCNNGC	1 cut(s)	366
CaiI	CAGNNNCTG	1 cut(s)	262
Csp6I	GTAC	3 cut(s)	4, 16, 259
CviAII	CATG	4 cut(s)	270, 334, 460, 524
CviJI	RGCY	7 cut(s)	83, 124, 145, 322, 423, 579, 603
CviKI_1	RGCY	7 cut(s)	83, 124, 145, 322, 423, 579, 603
CviQI	GTAC	3 cut(s)	4, 16, 259
DdeI	CTNAG	1 cut(s)	36
DpnI	GATC	5 cut(s)	291, 314, 387, 504, 562
DpnII	GATC	5 cut(s)	289, 312, 385, 502, 560
Eam1104I	CTCTTC	3 cut(s)	134, 150, 559
EarI	CTCTTC	3 cut(s)	134, 150, 559
Eco130I	CCWWGG	1 cut(s)	359
Eco81I	CCTNAGG	1 cut(s)	36
EcoRII	CCWGG	1 cut(s)	574
EcoT14I	CCWWGG	1 cut(s)	359
ErhI	CCWWGG	1 cut(s)	359
FaeI	CATG	4 cut(s)	273, 337, 463, 527
FalI	AAGNNNNNCTT	2 cut(s)	59, 91
FatI	CATG	4 cut(s)	269, 333, 459, 523
FauNDI	CATATG	2 cut(s)	184, 303
FokI	GGATG	2 cut(s)	290, 521
FspBI	CTAG	3 cut(s)	167, 564, 604
GsuI	CTGGAG	1 cut(s)	558
HaeIII	GGCC	1 cut(s)	579
Hin1II	CATG	4 cut(s)	273, 337, 463, 527
HincII	GTYRAC	1 cut(s)	403
HindII	GTYRAC	1 cut(s)	403
HindIII	AAGCTT	2 cut(s)	320, 421
HinfI	GANTC	1 cut(s)	158
HpaI	GTTAAC	1 cut(s)	403
HphI	GGTGA	2 cut(s)	208, 575
Hpy166II	GTNNAC	1 cut(s)	403
Hpy188I	TCNGA	3 cut(s)	91, 211, 317
Hpy188III	TCNNGA	7 cut(s)	67, 113, 389, 472, 506, 558, 564
Hpy8I	GTNNAC	1 cut(s)	403
HpyAV	CCTTC	2 cut(s)	122, 235
HpyCH4IV	ACGT	2 cut(s)	372, 417
HpyCH4V	TGCA	2 cut(s)	151, 218
HpyF10VI	GCNNNNNNNGC	1 cut(s)	420
HpyF3I	CTNAG	1 cut(s)	36
HpySE526I	ACGT	2 cut(s)	372, 417
Hsp92II	CATG	4 cut(s)	273, 337, 463, 527
KpnI	GGTACC	1 cut(s)	19
KspAI	GTTAAC	1 cut(s)	403
Kzo9I	GATC	5 cut(s)	289, 312, 385, 502, 560
LweI	GCATC	2 cut(s)	138, 543
MaeI	CTAG	3 cut(s)	167, 564, 604
MaeII	ACGT	2 cut(s)	372, 417
MaeIII	GTNAC	1 cut(s)	346
MalI	GATC	5 cut(s)	291, 314, 387, 504, 562
MboI	GATC	5 cut(s)	289, 312, 385, 502, 560
MboII	GAAGA	5 cut(s)	151, 167, 238, 299, 546
MflI	RGATCY	3 cut(s)	385, 502, 560
MluCI	AATT	5 cut(s)	108, 171, 328, 376, 511
MlyI	GAGTC	1 cut(s)	167
MnlI	CCTC	8 cut(s)	31, 135, 174, 424, 468, 549, 552, 562
MroXI	GAANNNNTTC	1 cut(s)	74
MseI	TTAA	1 cut(s)	402
MspR9I	CCNGG	1 cut(s)	576
MvaI	CCWGG	1 cut(s)	576
MwoI	GCNNNNNNNGC	1 cut(s)	420
NdeI	CATATG	2 cut(s)	184, 303
NdeII	GATC	5 cut(s)	289, 312, 385, 502, 560
NlaIII	CATG	4 cut(s)	273, 337, 463, 527
NlaIV	GGNNCC	2 cut(s)	17, 504
NmuCI	GTSAC	1 cut(s)	346
PdmI	GAANNNNTTC	1 cut(s)	74
PflFI	GACNNNGTC	1 cut(s)	95
PleI	GAGTC	1 cut(s)	166
PpsI	GAGTC	1 cut(s)	166
Ppu21I	YACGTR	1 cut(s)	373
Psp6I	CCWGG	1 cut(s)	574
PspGI	CCWGG	1 cut(s)	574
PspN4I	GGNNCC	2 cut(s)	17, 504
PstNI	CAGNNNCTG	1 cut(s)	262
PsuI	RGATCY	3 cut(s)	385, 502, 560
PsyI	GACNNNGTC	1 cut(s)	95
RsaI	GTAC	3 cut(s)	5, 17, 260
RsaNI	GTAC	3 cut(s)	4, 16, 259
SaqAI	TTAA	1 cut(s)	402
Sau3AI	GATC	5 cut(s)	289, 312, 385, 502, 560
SchI	GAGTC	1 cut(s)	167
ScrFI	CCNGG	1 cut(s)	576
SfaNI	GCATC	2 cut(s)	138, 543
Sse9I	AATT	5 cut(s)	108, 171, 328, 376, 511
SsiI	CCGC	1 cut(s)	267
SspMI	CTAG	3 cut(s)	167, 564, 604
StyD4I	CCNGG	1 cut(s)	574
StyI	CCWWGG	1 cut(s)	359
TaiI	ACGT	2 cut(s)	375, 420
TaqI	TCGA	1 cut(s)	26
TaqII	GACCGA	1 cut(s)	509
TasI	AATT	5 cut(s)	108, 171, 328, 376, 511
TatI	WGTACW	1 cut(s)	3
Tru1I	TTAA	1 cut(s)	402
Tru9I	TTAA	1 cut(s)	402
TseFI	GTSAC	1 cut(s)	346
Tsp45I	GTSAC	1 cut(s)	346
TspDTI	ATGAA	3 cut(s)	415, 448, 540
Tth111I	GACNNNGTC	1 cut(s)	95
XbaI	TCTAGA	1 cut(s)	563
XmnI	GAANNNNTTC	1 cut(s)	74
XspI	CTAG	3 cut(s)	167, 564, 604

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.