Rmu_sc0000346.1_g000021

Belongs to the oxygen-dependent FAD-linked oxidoreductase family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000346.1
Physical Location & Seq
Forward (+)
81133 .. 82455
1323 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000346.1_g000021.1.cds

Sequence Viewer

Length: 1323 bp
atgagagtccgaagtggaggccatgactatgaagcactctcttatgtctcccaaaccgaaacacctttcatcattgtagacctcgccaagcttcgatcagtcaacattgacatcgaagacaacagtgcttgggtccaagccggtgcctccattggtgaagtgtactacagaattgcagaaaaaagcaaaacacatggctaccctgccggactctgcacgagtctaggtgttggcgggcacattactggaggggcatatggtaccatgatgaggaagtatggccttggtgctgacaatgtcattgatgctcggattgttgatgttagtggcaggattcataatcgagaatcgatgggagaggatctgttttgggccatcagaggaggtggaggagcaagctttggggttatcctctggtggaagatcaagcttgttcctgttccatcaaccgtgacagttttttcagttgtcaaaacccttgagcaaggcgccacgaagctcctccataggtatcaacaagtagctgccactgagcttgatgaagatctcttcattagagttatcatacaaccaacggtcatcgacaccaaaagtggtaacaaaactgtcgtgactatctaccaagctcagtttcttggaggcgttgatagactccttgatgttatgggaacaagtttccctgaactgggtctgacaaggaaagattgcacacaaacaagttggctcaaatctgtgatgttcatagcaggttacccaagtggaactccacctgaggttttgcttcaaggaaaatccactttcaagaactacttcaaagccaagtcagattttgtcaaagacccaattccggaatctgcacttgaggggttatggaaaaggttattcgaacaagcctctcctttattgattttcaacccatatggaggaatgatgagcaagatttcggagtcggagatacctttcccacacagaaagggagtgctcttcaagattcagtacctgacgacatggcaaaataaagatgaagatgaagcagaacacatggattggattaggaagctgtacaattacatggctccttatgttacgatgttcccaaggcaagcatatgtgaactatagggatcttgatttggggattaacaagaagagcaacacaagcttcattgaagcaagtgcttggggtaacaggtatttcaaggacaacttcaacaaattgataaagatcaagaccaaagtcgatcctgataacttcttcaggcatgaacagagcatcccacctcttccactccctctacgaacatcatctacaactgtgaggtga

Protein Analysis

440

Amino Acids

49.5

Weight (kDa)

8.95

Isoelectric Point (pI)

32.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 737
Acc65I GGTACC 1 cut(s) 260
AccB1I GGYRCC 3 cut(s) 143, 260, 488
AccI GTMKAC 1 cut(s) 78
AccIII TCCGGA 1 cut(s) 847
AciI CCGC 1 cut(s) 234
AclWI GGATC 3 cut(s) 369, 1131, 1235
AcuI CTGAAG 1 cut(s) 1240
AcyI GRCGYC 1 cut(s) 489
AfaI GTAC 4 cut(s) 164, 262, 998, 1064
AfiI CCNNNNNNNGG 5 cut(s) 270, 685, 686, 847, 923
AgsI TTSAA 8 cut(s) 785, 802, 814, 913, 988, 1169, 1198, 1210
AjuI GAANNNNNNNTTGG 2 cut(s) 615, 647
AloI GAACNNNNNNTCC 2 cut(s) 1257, 1289
AluBI AGCT 9 cut(s) 91, 399, 430, 499, 524, 535, 626, 1060, 1161
AluI AGCT 9 cut(s) 91, 399, 430, 499, 524, 535, 626, 1060, 1161
Alw21I GWGCWC 1 cut(s) 984
Alw26I GTCTC 1 cut(s) 52
AlwI GGATC 3 cut(s) 369, 1131, 1235
AlwNI CAGNNNCTG 1 cut(s) 1000
Aor13HI TCCGGA 1 cut(s) 847
AoxI GGCC 3 cut(s) 19, 280, 372
ApeKI GCWGC 1 cut(s) 524
Asp700I GAANNNNTTC 1 cut(s) 809
Asp718I GGTACC 1 cut(s) 260
AspLEI GCGC 1 cut(s) 491
AspS9I GGNCC 2 cut(s) 133, 372
AsuHPI GGTGA 1 cut(s) 167
AsuII TTCGAA 1 cut(s) 885
AvaII GGWCC 1 cut(s) 133
AxyI CCTNAGG 1 cut(s) 771
BaeGI GKGCMC 1 cut(s) 240
BanI GGYRCC 3 cut(s) 143, 260, 488
BauI CACGAG 1 cut(s) 217
BbsI GAAGAC 1 cut(s) 123
Bbv12I GWGCWC 1 cut(s) 984
BbvI GCAGC 1 cut(s) 511
BccI CCATC 3 cut(s) 346, 383, 451
BcoDI GTCTC 1 cut(s) 52
BfaI CTAG 1 cut(s) 224
BfmI CTRYAG 2 cut(s) 166, 1117
BfoI RGCGCY 1 cut(s) 492
BfuAI ACCTGC 1 cut(s) 737
BglII AGATCT 1 cut(s) 544
BisI GCNGC 1 cut(s) 525
BlsI GCNGC 1 cut(s) 526
Bme18I GGWCC 1 cut(s) 133
BmgT120I GGNCC 2 cut(s) 133, 372
BmiI GGNNCC 5 cut(s) 134, 145, 262, 490, 1077
BmrI ACTGGG 1 cut(s) 695
BmsI GCATC 2 cut(s) 295, 1281
BmuI ACTGGG 1 cut(s) 695
BoxI GACNNNNGTC 1 cut(s) 1235
BpiI GAAGAC 1 cut(s) 123
BpmI CTGGAG 1 cut(s) 267
Bpu14I TTCGAA 1 cut(s) 885
BpuEI CTTGAG 2 cut(s) 500, 881
Bsa29I ATCGAT 1 cut(s) 350
BsaBI GATNNNNATC 2 cut(s) 543, 1223
BsaHI GRCGYC 1 cut(s) 489
BsaJI CCNNGG 2 cut(s) 283, 1097
BsaWI WCCGGW 1 cut(s) 847
Bsc4I CCNNNNNNNGG 5 cut(s) 270, 685, 686, 847, 923
Bse118I RCCGGY 1 cut(s) 140
Bse1I ACTGG 2 cut(s) 250, 690
Bse21I CCTNAGG 1 cut(s) 771
Bse8I GATNNNNATC 2 cut(s) 543, 1223
BseAI TCCGGA 1 cut(s) 847
BseCI ATCGAT 1 cut(s) 350
BseDI CCNNGG 2 cut(s) 283, 1097
BseGI GGATG 1 cut(s) 1272
BseJI GATNNNNATC 2 cut(s) 543, 1223
BseLI CCNNNNNNNGG 5 cut(s) 270, 685, 686, 847, 923
BseMII CTCAG 3 cut(s) 522, 641, 762
BseNI ACTGG 2 cut(s) 250, 690
BseRI GAGGAG 3 cut(s) 396, 405, 491
BseSI GKGCMC 1 cut(s) 240
BseXI GCAGC 1 cut(s) 511
BsgI GTGCAG 2 cut(s) 199, 840
BshFI GGCC 3 cut(s) 21, 282, 374
BshNI GGYRCC 3 cut(s) 143, 260, 488
BshVI ATCGAT 1 cut(s) 350
BsiHKAI GWGCWC 1 cut(s) 984
BsiSI CCGG 3 cut(s) 141, 207, 848
BslI CCNNNNNNNGG 5 cut(s) 270, 685, 686, 847, 923
BsmAI GTCTC 1 cut(s) 52
BsnI GGCC 3 cut(s) 21, 282, 374
Bsp119I TTCGAA 1 cut(s) 885
Bsp1286I GDGCHC 2 cut(s) 240, 984
Bsp13I TCCGGA 1 cut(s) 847
Bsp1407I TGTACA 1 cut(s) 1062
Bsp143I GATC 7 cut(s) 95, 361, 423, 544, 1123, 1224, 1240
BspACI CCGC 1 cut(s) 234
BspANI GGCC 3 cut(s) 21, 282, 374
BspCNI CTCAG 3 cut(s) 523, 640, 763
BspDI ATCGAT 1 cut(s) 350
BspEI TCCGGA 1 cut(s) 847
BspLI GGNNCC 5 cut(s) 134, 145, 262, 490, 1077
BspMI ACCTGC 1 cut(s) 737
BspPI GGATC 3 cut(s) 369, 1131, 1235
BspQI GCTCTTC 2 cut(s) 989, 1142
BspT104I TTCGAA 1 cut(s) 885
BspT107I GGYRCC 3 cut(s) 143, 260, 488
BsrFI RCCGGY 1 cut(s) 140
BsrGI TGTACA 1 cut(s) 1062
BsrI ACTGG 2 cut(s) 250, 690
BssAI RCCGGY 1 cut(s) 140
BssECI CCNNGG 2 cut(s) 283, 1097
BssMI GATC 7 cut(s) 95, 361, 423, 544, 1123, 1224, 1240
BssNI GRCGYC 1 cut(s) 489
BssSI CACGAG 1 cut(s) 217
BssT1I CCWWGG 2 cut(s) 283, 1097
Bst2BI CACGAG 1 cut(s) 217
Bst4CI ACNGT 6 cut(s) 125, 451, 457, 577, 607, 1315
Bst6I CTCTTC 4 cut(s) 554, 989, 1142, 1287
BstACI GRCGYC 1 cut(s) 489
BstAUI TGTACA 1 cut(s) 1062
BstBI TTCGAA 1 cut(s) 885
BstC8I GCNNGC 3 cut(s) 236, 397, 1104
BstDEI CTNAG 3 cut(s) 531, 627, 771
BstEII GGTNACC 1 cut(s) 749
BstF5I GGATG 1 cut(s) 1272
BstH2I RGCGCY 1 cut(s) 492
BstHHI GCGC 1 cut(s) 491
BstKTI GATC 7 cut(s) 98, 364, 426, 547, 1126, 1227, 1243
BstMAI GTCTC 1 cut(s) 52
BstMBI GATC 7 cut(s) 95, 361, 423, 544, 1123, 1224, 1240
BstMWI GCNNNNNNNGC 1 cut(s) 1158
BstPAI GACNNNNGTC 1 cut(s) 1235
BstPI GGTNACC 1 cut(s) 749
BstSFI CTRYAG 2 cut(s) 166, 1117
BstSLI GKGCMC 1 cut(s) 240
BstV1I GCAGC 1 cut(s) 511
BstV2I GAAGAC 1 cut(s) 123
BstX2I RGATCY 3 cut(s) 361, 544, 1123
BstYI RGATCY 3 cut(s) 361, 544, 1123
Bsu15I ATCGAT 1 cut(s) 350
Bsu36I CCTNAGG 1 cut(s) 771
BsuRI GGCC 3 cut(s) 21, 282, 374
BsuTUI ATCGAT 1 cut(s) 350
BtsCI GGATG 1 cut(s) 1272
BtsIMutI CAGTG 2 cut(s) 130, 528
BveI ACCTGC 1 cut(s) 737
Cac8I GCNNGC 3 cut(s) 236, 397, 1104
CaiI CAGNNNCTG 1 cut(s) 1000
CfoI GCGC 1 cut(s) 491
Cfr10I RCCGGY 1 cut(s) 140
Cfr13I GGNCC 2 cut(s) 133, 372
ClaI ATCGAT 1 cut(s) 350
Csp6I GTAC 4 cut(s) 163, 261, 997, 1063
CspCI CAANNNNNGTGG 2 cut(s) 517, 552
CviAII CATG 7 cut(s) 23, 194, 265, 1008, 1042, 1072, 1262
CviQI GTAC 4 cut(s) 163, 261, 997, 1063
DdeI CTNAG 3 cut(s) 531, 627, 771
DinI GGCGCC 1 cut(s) 490
DpnI GATC 7 cut(s) 97, 363, 425, 546, 1125, 1226, 1242
DpnII GATC 7 cut(s) 95, 361, 423, 544, 1123, 1224, 1240
Eam1104I CTCTTC 4 cut(s) 554, 989, 1142, 1287
EarI CTCTTC 4 cut(s) 554, 989, 1142, 1287
Eco130I CCWWGG 2 cut(s) 283, 1097
Eco47I GGWCC 1 cut(s) 133
Eco57I CTGAAG 1 cut(s) 1240
Eco81I CCTNAGG 1 cut(s) 771
Eco91I GGTNACC 1 cut(s) 749
EcoO65I GGTNACC 1 cut(s) 749
EcoT14I CCWWGG 2 cut(s) 283, 1097
EgeI GGCGCC 1 cut(s) 490
EheI GGCGCC 1 cut(s) 490
ErhI CCWWGG 2 cut(s) 283, 1097
FaeI CATG 7 cut(s) 26, 197, 268, 1011, 1045, 1075, 1265
FalI AAGNNNNNCTT 4 cut(s) 794, 826, 1190, 1222
FatI CATG 7 cut(s) 22, 193, 264, 1007, 1041, 1071, 1261
FauI CCCGC 1 cut(s) 227
FauNDI CATATG 3 cut(s) 256, 919, 1108
FblI GTMKAC 1 cut(s) 78
Fnu4HI GCNGC 1 cut(s) 525
FokI GGATG 1 cut(s) 1259
Fsp4HI GCNGC 1 cut(s) 525
FspBI CTAG 1 cut(s) 224
GlaI GCGC 1 cut(s) 490
GluI GCNGC 1 cut(s) 525
GsuI CTGGAG 1 cut(s) 267
HaeII RGCGCY 1 cut(s) 492
HaeIII GGCC 3 cut(s) 21, 282, 374
HapII CCGG 3 cut(s) 141, 207, 848
HhaI GCGC 1 cut(s) 491
Hin1I GRCGYC 1 cut(s) 489
Hin1II CATG 7 cut(s) 26, 197, 268, 1011, 1045, 1075, 1265
Hin6I GCGC 1 cut(s) 489
HinP1I GCGC 1 cut(s) 489
HincII GTYRAC 1 cut(s) 103
HindII GTYRAC 1 cut(s) 103
HindIII AAGCTT 4 cut(s) 89, 397, 428, 1159
HinfI GANTC 9 cut(s) 6, 210, 220, 334, 347, 651, 851, 947, 991
HpaII CCGG 3 cut(s) 141, 207, 848
HphI GGTGA 1 cut(s) 167
Hpy166II GTNNAC 4 cut(s) 79, 103, 163, 1114
Hpy188I TCNGA 7 cut(s) 11, 312, 380, 693, 826, 946, 952
Hpy188III TCNNGA 8 cut(s) 344, 610, 802, 848, 988, 1127, 1228, 1244
Hpy8I GTNNAC 4 cut(s) 79, 103, 163, 1114
HpyCH4III ACNGT 6 cut(s) 125, 451, 457, 577, 607, 1315
HpyCH4V TGCA 4 cut(s) 176, 216, 708, 857
HpyF10VI GCNNNNNNNGC 1 cut(s) 1158
HpyF3I CTNAG 3 cut(s) 531, 627, 771
Hsp92I GRCGYC 1 cut(s) 489
Hsp92II CATG 7 cut(s) 26, 197, 268, 1011, 1045, 1075, 1265
HspAI GCGC 1 cut(s) 489
KasI GGCGCC 1 cut(s) 488
Kpn2I TCCGGA 1 cut(s) 847
KpnI GGTACC 1 cut(s) 264
Kzo9I GATC 7 cut(s) 95, 361, 423, 544, 1123, 1224, 1240
LguI GCTCTTC 2 cut(s) 989, 1142
LmnI GCTCC 3 cut(s) 392, 504, 1081
Lsp1109I GCAGC 1 cut(s) 511
LweI GCATC 2 cut(s) 295, 1281
MaeI CTAG 1 cut(s) 224
MaeIII GTNAC 6 cut(s) 451, 596, 610, 749, 1084, 1184
MalI GATC 7 cut(s) 97, 363, 425, 546, 1125, 1226, 1242
MboI GATC 7 cut(s) 95, 361, 423, 544, 1123, 1224, 1240
MboII GAAGA 9 cut(s) 128, 433, 541, 554, 976, 1037, 1159, 1246, 1274
MflI RGATCY 3 cut(s) 361, 544, 1123
MhlI GDGCHC 2 cut(s) 240, 984
MluCI AATT 4 cut(s) 171, 843, 1066, 1214
Mly113I GGCGCC 1 cut(s) 489
MlyI GAGTC 5 cut(s) 15, 204, 229, 645, 956
MmeI TCCRAC 1 cut(s) 930
MroI TCCGGA 1 cut(s) 847
MroXI GAANNNNTTC 1 cut(s) 809
MseI TTAA 1 cut(s) 1140
MslI CAYNNNNRTG 1 cut(s) 27
MspI CCGG 3 cut(s) 141, 207, 848
MwoI GCNNNNNNNGC 1 cut(s) 1158
NarI GGCGCC 1 cut(s) 489
NdeI CATATG 3 cut(s) 256, 919, 1108
NdeII GATC 7 cut(s) 95, 361, 423, 544, 1123, 1224, 1240
NlaIII CATG 7 cut(s) 26, 197, 268, 1011, 1045, 1075, 1265
NlaIV GGNNCC 5 cut(s) 134, 145, 262, 490, 1077
NmuCI GTSAC 2 cut(s) 451, 610
NspV TTCGAA 1 cut(s) 885
PciSI GCTCTTC 2 cut(s) 989, 1142
PdmI GAANNNNTTC 1 cut(s) 809
PfeI GAWTC 4 cut(s) 334, 347, 851, 991
PflFI GACNNNGTC 1 cut(s) 296
PkrI GCNGC 1 cut(s) 526
PleI GAGTC 5 cut(s) 14, 204, 228, 645, 955
PluTI GGCGCC 1 cut(s) 492
PpsI GAGTC 5 cut(s) 14, 204, 228, 645, 955
PshAI GACNNNNGTC 1 cut(s) 1235
PspEI GGTNACC 1 cut(s) 749
PspN4I GGNNCC 5 cut(s) 134, 145, 262, 490, 1077
PspPI GGNCC 2 cut(s) 133, 372
PsrI GAACNNNNNNTAC 2 cut(s) 1291, 1323
PstNI CAGNNNCTG 1 cut(s) 1000
PsuI RGATCY 3 cut(s) 361, 544, 1123
PsyI GACNNNGTC 1 cut(s) 296
RsaI GTAC 4 cut(s) 164, 262, 998, 1064
RsaNI GTAC 4 cut(s) 163, 261, 997, 1063
RseI CAYNNNNRTG 1 cut(s) 27
SapI GCTCTTC 2 cut(s) 989, 1142
SaqAI TTAA 1 cut(s) 1140
SatI GCNGC 1 cut(s) 525
Sau3AI GATC 7 cut(s) 95, 361, 423, 544, 1123, 1224, 1240
Sau96I GGNCC 2 cut(s) 133, 372
SchI GAGTC 5 cut(s) 15, 204, 229, 645, 956
SduI GDGCHC 2 cut(s) 240, 984
SfaNI GCATC 2 cut(s) 295, 1281
SfcI CTRYAG 2 cut(s) 166, 1117
SfoI GGCGCC 1 cut(s) 490
SfuI TTCGAA 1 cut(s) 885
SinI GGWCC 1 cut(s) 133
SmiMI CAYNNNNRTG 1 cut(s) 27
SmlI CTYRAG 2 cut(s) 479, 860
SmoI CTYRAG 2 cut(s) 479, 860
Sse9I AATT 4 cut(s) 171, 843, 1066, 1214
SsiI CCGC 1 cut(s) 234
SspDI GGCGCC 1 cut(s) 488
SspMI CTAG 1 cut(s) 224
StyI CCWWGG 2 cut(s) 283, 1097
TaaI ACNGT 6 cut(s) 125, 451, 457, 577, 607, 1315
TaqI TCGA 7 cut(s) 94, 114, 343, 350, 582, 885, 1239
TasI AATT 4 cut(s) 171, 843, 1066, 1214
TatI WGTACW 2 cut(s) 162, 1062
TfiI GAWTC 4 cut(s) 334, 347, 851, 991
Tru1I TTAA 1 cut(s) 1140
Tru9I TTAA 1 cut(s) 1140
TscAI CASTG 2 cut(s) 130, 535
TseFI GTSAC 2 cut(s) 451, 610
TseI GCWGC 1 cut(s) 524
Tsp45I GTSAC 2 cut(s) 451, 610
TspRI CASTG 2 cut(s) 130, 535
Tth111I GACNNNGTC 1 cut(s) 296
VpaK11BI GGWCC 1 cut(s) 133
XmiI GTMKAC 1 cut(s) 78
XmnI GAANNNNTTC 1 cut(s) 809
XspI CTAG 1 cut(s) 224
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.