Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0003564

Physical Location & Seq

Genomic Coordinates Forward (+)

26623085 .. 26624020

Gene Structure 936 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g25130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGCAATTAAGCATGAAGCATTCAATTCCAAACACTTCAATTTTCTCACTGTTTCTTCTCCTGATTTCAACTTCATGGGTACATTCTCTACCTTCATTACAAGAATTCAGCCAATGCCTCTCCGAAAATTCTGACATTTCAATCCCATTCACCACAGCCTTGATCACCCCAAAAAATTCTACATTCCTTCCATTCCTACAATCTTCTGCACAAAATCTTAGGTACTTGGTCCCTTCAGCGCCAAAGCCTGAGTTTATCTTCACACCATTGCATGATACCCACGTCCAAGCTGCTGTCATTTGCTCAAAGCAGCTTGAAATCCACCTCAGAGTTAGAAGTGGAGGCCATGATTATGAGGCCCTCTCTTATGTCTCCCAAATCGAAACGCCTTTCATCATTGTAGACCTCGCCAAGCTTCGATCAGTCATTGTTGATATCGAAGACAACAGCGCATGGGCTCAAGCTGGGGCCACCATTGGTGAAGTTTACTACAGAATTGCACAGAAGAGCAAAACACACGGCTTCCCTGCCGGGCTTTGCACGAGTCTAGGTGTTGGCGGGCATATAACTGGAGGTGCATATGGCTCCATGATGAGGAAATATGGCCTTGGAGCTGACAATGTCATTGATGCGAGAATCATTGATGTGAGTGGTAGAGTTCTTGATAGAGCAGCAATGGGAGAAGACCTTTTTTGGGCAATCAGAGGAGGTGGAGGAGGAAGCTTTGGAATCATCCTTTGGTGGAAGATAAAGCTCGTTCCTGTTCCGGCAACCGTGACAGTTTTTACTGTTCCTAAAACCTTGGAAACAGGTGCCACTAAAGTCCTACATAAATGGCAACAAGTAGCTCCCACTAAGCTGGATGAAGATCGATCTTTATTAGAGTCGTCATACAAGTGTCGAAAGACAGCAAAACTGGCAATAAAACTGTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005829 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0006979 GO:0008150 GO:0008152 GO:0009505 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0016020 GO:0016491 GO:0016614 GO:0016899 GO:0030054 GO:0030312 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048046 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0055114 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

BBE FAD_binding_4

Protein Analysis

312

Amino Acids

34.05

Weight (kDa)

8.95

Isoelectric Point (pI)

37.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAD_binding_4	PF01565	83 - 221	6.3e-22	FAD binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003564)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30760 AT1G30760 AT2G34790 AT5G44390 AT5G44400
fragaria_vesca	FvH4_3g10920
malus_domestica	MD05G1268400.v1.1 MD05G1268500.v1.1 MD10G1244500.v1.1
prunus_persica	Prupe.4G096300_v2.0.a1 Prupe.4G096400_v2.0.a1
pyrus_communis	pycom05g25130 pycom05g25140 pycom10g20500
rosa_chinensis	RchiOBHm_Chr5g0017561 RchiOBHm_Chr5g0017591 RchiOBHm_Chr5g0017601 RchiOBHm_Chr5g0017621 RchiOBHm_Chr5g0017641
rosa_laevigata	RLG00000032298 RLG00000032301 RLG00000032302
rosa_multiflora	Rmu_sc0000346.1_g000021 Rmu_sc0000346.1_g000022 Rmu_sc0002565.1_g000007 Rmu_sc0003415.1_g000020
rosa_roxburghii	Rroxscaffold_1G00059870 Rroxscaffold_1G00059880 Rroxscaffold_1G00059890
rosa_rugosa	Rorug05G0036900 Rorug05G0037000 Rorug05G0037100
rosa_wichuraiana	Rw5G011310 Rw5G011320 Rw5G011330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	812
AccI	GTMKAC	1 cut(s)	402
AciI	CCGC	1 cut(s)	558
AcsI	RAATTY	3 cut(s)	104, 127, 175
AcuI	CTGAAG	1 cut(s)	219
AfaI	GTAC	2 cut(s)	81, 224
AfiI	CCNNNNNNNGG	2 cut(s)	594, 694
AgsI	TTSAA	5 cut(s)	24, 39, 69, 141, 317
AjiI	CACGTC	1 cut(s)	283
AjuI	GAANNNNNNNTTGG	2 cut(s)	721, 753
AluBI	AGCT	9 cut(s)	290, 313, 415, 464, 614, 723, 754, 848, 859
AluI	AGCT	9 cut(s)	290, 313, 415, 464, 614, 723, 754, 848, 859
Alw26I	GTCTC	1 cut(s)	376
AoxI	GGCC	4 cut(s)	343, 357, 468, 604
ApeKI	GCWGC	3 cut(s)	290, 310, 671
ApoI	RAATTY	3 cut(s)	104, 127, 175
AspLEI	GCGC	2 cut(s)	241, 452
AspS9I	GGNCC	3 cut(s)	229, 358, 468
AsuC2I	CCSGG	1 cut(s)	532
AsuHPI	GGTGA	3 cut(s)	142, 157, 491
AvaII	GGWCC	1 cut(s)	229
BaeI	ACNNNNGTAYC	2 cut(s)	267, 300
BanI	GGYRCC	1 cut(s)	812
BanII	GRGCYC	1 cut(s)	460
BauI	CACGAG	1 cut(s)	541
BbsI	GAAGAC	2 cut(s)	447, 690
BbvI	GCAGC	3 cut(s)	277, 322, 683
BceAI	ACGGC	1 cut(s)	535
BclI	TGATCA	1 cut(s)	162
BcnI	CCSGG	1 cut(s)	532
BcoDI	GTCTC	1 cut(s)	376
BfaI	CTAG	1 cut(s)	548
BfmI	CTRYAG	1 cut(s)	490
BfoI	RGCGCY	1 cut(s)	242
BisI	GCNGC	3 cut(s)	291, 311, 672
BlsI	GCNGC	3 cut(s)	292, 312, 673
Bme1390I	CCNGG	1 cut(s)	532
Bme18I	GGWCC	1 cut(s)	229
BmgBI	CACGTC	1 cut(s)	283
BmgT120I	GGNCC	3 cut(s)	229, 358, 468
BmiI	GGNNCC	4 cut(s)	231, 469, 586, 814
BmrFI	CCNGG	1 cut(s)	532
BmsI	GCATC	1 cut(s)	619
BpiI	GAAGAC	2 cut(s)	447, 690
BplI	GAGNNNNNCTC	2 cut(s)	347, 379
BpmI	CTGGAG	1 cut(s)	591
BpuEI	CTTGAG	1 cut(s)	444
BpuMI	CCSGG	1 cut(s)	532
Bsa29I	ATCGAT	1 cut(s)	871
BsaBI	GATNNNNATC	1 cut(s)	867
BsaJI	CCNNGG	2 cut(s)	607, 801
Bsc4I	CCNNNNNNNGG	2 cut(s)	594, 694
Bse1I	ACTGG	2 cut(s)	574, 921
Bse3DI	GCAATG	2 cut(s)	266, 681
Bse8I	GATNNNNATC	1 cut(s)	867
BseCI	ATCGAT	1 cut(s)	871
BseDI	CCNNGG	2 cut(s)	607, 801
BseGI	GGATG	2 cut(s)	732, 868
BseJI	GATNNNNATC	1 cut(s)	867
BseLI	CCNNNNNNNGG	2 cut(s)	594, 694
BseMI	GCAATG	2 cut(s)	266, 681
BseMII	CTCAG	2 cut(s)	240, 340
BseNI	ACTGG	2 cut(s)	574, 921
BseRI	GAGGAG	2 cut(s)	720, 729
BseXI	GCAGC	3 cut(s)	277, 322, 683
BseYI	CCCAGC	1 cut(s)	464
BsgI	GTGCAG	1 cut(s)	192
BshFI	GGCC	4 cut(s)	345, 359, 470, 606
BshNI	GGYRCC	1 cut(s)	812
BshVI	ATCGAT	1 cut(s)	871
BsiSI	CCGG	2 cut(s)	531, 767
BslFI	GGGAC	1 cut(s)	215
BslI	CCNNNNNNNGG	2 cut(s)	594, 694
BsmAI	GTCTC	1 cut(s)	376
BsmFI	GGGAC	1 cut(s)	215
BsmI	GAATGC	1 cut(s)	19
BsnI	GGCC	4 cut(s)	345, 359, 470, 606
Bsp1286I	GDGCHC	1 cut(s)	460
Bsp143I	GATC	4 cut(s)	162, 419, 868, 872
BspACI	CCGC	1 cut(s)	558
BspANI	GGCC	4 cut(s)	345, 359, 470, 606
BspCNI	CTCAG	2 cut(s)	241, 339
BspDI	ATCGAT	1 cut(s)	871
BspLI	GGNNCC	4 cut(s)	231, 469, 586, 814
BspQI	GCTCTTC	1 cut(s)	500
BspT107I	GGYRCC	1 cut(s)	812
BsrDI	GCAATG	2 cut(s)	266, 681
BsrI	ACTGG	2 cut(s)	574, 921
BssECI	CCNNGG	2 cut(s)	607, 801
BssMI	GATC	4 cut(s)	162, 419, 868, 872
BssSI	CACGAG	1 cut(s)	541
BssT1I	CCWWGG	2 cut(s)	607, 801
Bst2BI	CACGAG	1 cut(s)	541
Bst4CI	ACNGT	5 cut(s)	51, 775, 781, 790, 930
Bst6I	CTCTTC	1 cut(s)	500
BstC8I	GCNNGC	1 cut(s)	560
BstDEI	CTNAG	4 cut(s)	218, 249, 326, 855
BstF5I	GGATG	2 cut(s)	732, 868
BstH2I	RGCGCY	1 cut(s)	242
BstHHI	GCGC	2 cut(s)	241, 452
BstKTI	GATC	4 cut(s)	165, 422, 871, 875
BstMAI	GTCTC	1 cut(s)	376
BstMBI	GATC	4 cut(s)	162, 419, 868, 872
BstMWI	GCNNNNNNNGC	1 cut(s)	917
BstSCI	CCNGG	1 cut(s)	530
BstSFI	CTRYAG	1 cut(s)	490
BstV1I	GCAGC	3 cut(s)	277, 322, 683
BstV2I	GAAGAC	2 cut(s)	447, 690
BstXI	CCANNNNNNTGG	1 cut(s)	859
Bsu15I	ATCGAT	1 cut(s)	871
BsuRI	GGCC	4 cut(s)	345, 359, 470, 606
BsuTUI	ATCGAT	1 cut(s)	871
BtrI	CACGTC	1 cut(s)	283
BtsCI	GGATG	2 cut(s)	732, 868
BtsIMutI	CAGTG	1 cut(s)	47
Cac8I	GCNNGC	1 cut(s)	560
CfoI	GCGC	2 cut(s)	241, 452
Cfr13I	GGNCC	3 cut(s)	229, 358, 468
ClaI	ATCGAT	1 cut(s)	871
Csp6I	GTAC	2 cut(s)	80, 223
CviAII	CATG	6 cut(s)	13, 75, 272, 347, 453, 589
CviQI	GTAC	2 cut(s)	80, 223
DdeI	CTNAG	4 cut(s)	218, 249, 326, 855
DpnI	GATC	4 cut(s)	164, 421, 870, 874
DpnII	GATC	4 cut(s)	162, 419, 868, 872
Eam1104I	CTCTTC	1 cut(s)	500
EarI	CTCTTC	1 cut(s)	500
Eco130I	CCWWGG	2 cut(s)	607, 801
Eco24I	GRGCYC	1 cut(s)	460
Eco32I	GATATC	1 cut(s)	436
Eco47I	GGWCC	1 cut(s)	229
Eco57I	CTGAAG	1 cut(s)	219
EcoO109I	RGGNCCY	1 cut(s)	358
EcoRI	GAATTC	1 cut(s)	104
EcoRV	GATATC	1 cut(s)	436
EcoT14I	CCWWGG	2 cut(s)	607, 801
EcoT38I	GRGCYC	1 cut(s)	460
ErhI	CCWWGG	2 cut(s)	607, 801
FaeI	CATG	6 cut(s)	16, 78, 275, 350, 456, 592
FaqI	GGGAC	1 cut(s)	215
FatI	CATG	6 cut(s)	12, 74, 271, 346, 452, 588
FauI	CCCGC	1 cut(s)	551
FauNDI	CATATG	1 cut(s)	580
FbaI	TGATCA	1 cut(s)	162
FblI	GTMKAC	1 cut(s)	402
Fnu4HI	GCNGC	3 cut(s)	291, 311, 672
FokI	GGATG	2 cut(s)	719, 875
FriOI	GRGCYC	1 cut(s)	460
Fsp4HI	GCNGC	3 cut(s)	291, 311, 672
FspBI	CTAG	1 cut(s)	548
GlaI	GCGC	2 cut(s)	240, 451
GluI	GCNGC	3 cut(s)	291, 311, 672
GsaI	CCCAGC	1 cut(s)	468
GsuI	CTGGAG	1 cut(s)	591
HaeII	RGCGCY	1 cut(s)	242
HaeIII	GGCC	4 cut(s)	345, 359, 470, 606
HapII	CCGG	2 cut(s)	531, 767
HhaI	GCGC	2 cut(s)	241, 452
Hin1II	CATG	6 cut(s)	16, 78, 275, 350, 456, 592
Hin6I	GCGC	2 cut(s)	239, 450
HinP1I	GCGC	2 cut(s)	239, 450
HindIII	AAGCTT	2 cut(s)	413, 721
HinfI	GANTC	4 cut(s)	544, 636, 729, 884
HpaII	CCGG	2 cut(s)	531, 767
HphI	GGTGA	3 cut(s)	142, 157, 491
Hpy166II	GTNNAC	2 cut(s)	403, 487
Hpy188I	TCNGA	4 cut(s)	124, 133, 329, 704
Hpy188III	TCNNGA	2 cut(s)	61, 662
Hpy8I	GTNNAC	2 cut(s)	403, 487
HpyAV	CCTTC	3 cut(s)	102, 197, 243
HpyCH4III	ACNGT	5 cut(s)	51, 775, 781, 790, 930
HpyCH4IV	ACGT	1 cut(s)	282
HpyCH4V	TGCA	6 cut(s)	4, 209, 271, 500, 540, 578
HpyF10VI	GCNNNNNNNGC	1 cut(s)	917
HpyF3I	CTNAG	4 cut(s)	218, 249, 326, 855
HpySE526I	ACGT	1 cut(s)	282
Hsp92II	CATG	6 cut(s)	16, 78, 275, 350, 456, 592
HspAI	GCGC	2 cut(s)	239, 450
Ksp22I	TGATCA	1 cut(s)	162
Kzo9I	GATC	4 cut(s)	162, 419, 868, 872
LguI	GCTCTTC	1 cut(s)	500
LmnI	GCTCC	3 cut(s)	590, 611, 853
Lsp1109I	GCAGC	3 cut(s)	277, 322, 683
LweI	GCATC	1 cut(s)	619
MaeI	CTAG	1 cut(s)	548
MaeII	ACGT	1 cut(s)	282
MaeIII	GTNAC	1 cut(s)	775
MalI	GATC	4 cut(s)	164, 421, 870, 874
MboI	GATC	4 cut(s)	162, 419, 868, 872
MboII	GAAGA	8 cut(s)	47, 195, 250, 452, 517, 695, 757, 878
MhlI	GDGCHC	1 cut(s)	460
MluCI	AATT	7 cut(s)	5, 24, 39, 104, 127, 175, 495
MlyI	GAGTC	2 cut(s)	553, 893
MseI	TTAA	1 cut(s)	8
MslI	CAYNNNNRTG	3 cut(s)	351, 644, 895
MspI	CCGG	2 cut(s)	531, 767
MspR9I	CCNGG	1 cut(s)	532
Mva1269I	GAATGC	1 cut(s)	19
MwoI	GCNNNNNNNGC	1 cut(s)	917
NciI	CCSGG	1 cut(s)	532
NdeI	CATATG	1 cut(s)	580
NdeII	GATC	4 cut(s)	162, 419, 868, 872
NlaIII	CATG	6 cut(s)	16, 78, 275, 350, 456, 592
NlaIV	GGNNCC	4 cut(s)	231, 469, 586, 814
NmuCI	GTSAC	1 cut(s)	775
PciSI	GCTCTTC	1 cut(s)	500
PctI	GAATGC	1 cut(s)	19
PfeI	GAWTC	2 cut(s)	636, 729
PflFI	GACNNNGTC	1 cut(s)	620
PkrI	GCNGC	3 cut(s)	292, 312, 673
PleI	GAGTC	2 cut(s)	552, 892
PpsI	GAGTC	2 cut(s)	552, 892
PspFI	CCCAGC	1 cut(s)	464
PspN4I	GGNNCC	4 cut(s)	231, 469, 586, 814
PspPI	GGNCC	3 cut(s)	229, 358, 468
PsyI	GACNNNGTC	1 cut(s)	620
RsaI	GTAC	2 cut(s)	81, 224
RsaNI	GTAC	2 cut(s)	80, 223
RseI	CAYNNNNRTG	3 cut(s)	351, 644, 895
SapI	GCTCTTC	1 cut(s)	500
SaqAI	TTAA	1 cut(s)	8
SatI	GCNGC	3 cut(s)	291, 311, 672
Sau3AI	GATC	4 cut(s)	162, 419, 868, 872
Sau96I	GGNCC	3 cut(s)	229, 358, 468
SchI	GAGTC	2 cut(s)	553, 893
ScrFI	CCNGG	1 cut(s)	532
SduI	GDGCHC	1 cut(s)	460
SfaNI	GCATC	1 cut(s)	619
SfcI	CTRYAG	1 cut(s)	490
SinI	GGWCC	1 cut(s)	229
SmiMI	CAYNNNNRTG	3 cut(s)	351, 644, 895
SmlI	CTYRAG	1 cut(s)	459
SmoI	CTYRAG	1 cut(s)	459
Sse9I	AATT	7 cut(s)	5, 24, 39, 104, 127, 175, 495
SsiI	CCGC	1 cut(s)	558
SspMI	CTAG	1 cut(s)	548
StyD4I	CCNGG	1 cut(s)	530
StyI	CCWWGG	2 cut(s)	607, 801
TaaI	ACNGT	5 cut(s)	51, 775, 781, 790, 930
TaiI	ACGT	1 cut(s)	285
TaqI	TCGA	5 cut(s)	381, 418, 438, 871, 901
TasI	AATT	7 cut(s)	5, 24, 39, 104, 127, 175, 495
TfiI	GAWTC	2 cut(s)	636, 729
Tru1I	TTAA	1 cut(s)	8
Tru9I	TTAA	1 cut(s)	8
TscAI	CASTG	1 cut(s)	54
TseFI	GTSAC	1 cut(s)	775
TseI	GCWGC	3 cut(s)	290, 310, 671
Tsp45I	GTSAC	1 cut(s)	775
TspDTI	ATGAA	5 cut(s)	29, 63, 84, 382, 879
TspRI	CASTG	1 cut(s)	54
Tth111I	GACNNNGTC	1 cut(s)	620
VpaK11BI	GGWCC	1 cut(s)	229
XapI	RAATTY	3 cut(s)	104, 127, 175
XmiI	GTMKAC	1 cut(s)	402
XspI	CTAG	1 cut(s)	548

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.