Rw5G011320

Belongs to the oxygen-dependent FAD-linked oxidoreductase family

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
Physical Location & Seq
Reverse (-)
12815451 .. 12817256
1806 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G011320.1

Sequence Viewer

Length: 1608 bp
ATGATGCTCTCAAACTCTTCTGTTTTTTCCCTGTTTCTTCTTATTTTGTTATCATCTTCATCAGCAAAACCACCATCTTCAAAACAAAACAGTTTTATCCAATGCCTCTCATATCATTCTAAGGCTTCTATTCCATTCTCTAGTACCTTTTTCACTCCAAACAGTTCTGCATTCACTACCGTCCTAAATTCAACTGCACAAAACCTCAGGTGCTTGATCCCTTCAGAGCCAAAGCCAGAGTTCATTTTCACACCAACAGATGATTCCCAAGTTCAAAATGCTGTTATTTGTTCAAAACAGCTTGGAATACATCTCAGGGTCCGAAGTGGAGGGCATGATTATGAAGGTCTCTCGTATGTGTCCCAAATTGAGACACCTTTCATTGTTGTAGACCTCGCCAAGCTTCGATCAGTTAATGTTGATATCCAAGGCAATAGTGCATGGATTCAAGCTGGAGCCACTATTGGTGAAGTTTACTACAGAATTGCAGAGAAAAGCAGAACCCACGGCTTCCCAGCTGGTCTTTGCACAAGTTTAGGGGTGGGTGGCCATATAACTGGAGGTGCATATGGTACTATGATGAGGAAATATGGCCTTGCAGCTGATAATGTCCTGGATGCCCGAATAGTTGATGTCAAAGGCAGAATTCTTGACCGAAAGACCATGGGAGAAGACCTGTTTTGGGCAATCAGAGGTGGTGGAGGAGCAAGCTTTGGAATCATCCTGTGGTGGAAGATAAAGTTGGTTCCCGTTCCATCAACTGTGACGGTTTTTACTGTTTCCAAGACTTTGGAACAGGGTGCCACAAAGCTCCTCCATAGATGGCAACAAGTAGCTGCTACTAAGCTCGACAAAGATCTCAACATTAGAGTTATGATACAACCAACAGTAGTTGACAGCAAAAGTGGCAAGAGAACTGTCACAACTCTTTACCAAGGTCAATTCCTTGGAGGTGTTAAAAGGCTCCTCAATGTTATGCAAACAGGGTTCCCCGAACTGAATTTGACAAGAAAAGATTGTACACAAACGAGTTGGCTCAAGTCTGTGATGTACATAGCAGGTTACGCAAATGGAACTCAGCCTGAGGTTTTGCTTCAAGGAAAACCCACATTCAAGAGCTACTTCAAAGCCAAATCAGACTTTGTCAAAGACCCGATTCCTGAAACTGGGCTTGAGGGGCTATGGAAAAGGTTGTTGGAAGAAACCGCTCCTCTGATTATTTGGAACCCATATGGGGGAGTGATGAGCAAAATTTCGGAGTCAGCATTACCCTTCCCACACAGAAATGTTCTCTTCAAAATTCAGTACCTGACTACATGGCAAGCTGCAAATGAAAACGAGGCAAAGCACATAAATTGGATTAGGAAGCTCTACAACTACATGGCTCCTTATGTCACAAAGTCCCCAAGGCAAGCATATGTGAATTATAGGGATCTTGATTTGGGGATAAACAATAACAAGAACACTAGCATCACTGAAGCAAGTGCTTGGGGTAACAGGTATTTCAAGGGCAACTTTTACAGATTGATAAAGATTAAAACCAAAGTTGATCCTCATAACTTCTTCAGGCACGAGCAGAGCATCCCGCCTCTTGCGCTCCAGGCATGA

Protein Analysis

535

Amino Acids

59.72

Weight (kDa)

9.66

Isoelectric Point (pI)

35.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAD_binding_4 PF01565 79 - 217 7.9e-26 FAD binding domain
BBE PF08031 472 - 529 9.3e-20 Berberine and berberine like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1049
AccB1I GGYRCC 1 cut(s) 800
AccBSI CCGCTC 1 cut(s) 1208
AccI GTMKAC 1 cut(s) 390
AciI CCGC 2 cut(s) 1206, 1586
AclWI GGATC 3 cut(s) 211, 1440, 1544
AcoI YGGCCR 1 cut(s) 547
AcsI RAATTY 5 cut(s) 187, 645, 1000, 1251, 1299
AcuI CTGAAG 3 cut(s) 207, 1497, 1549
AfaI GTAC 5 cut(s) 145, 574, 1021, 1052, 1307
AfiI CCNNNNNNNGG 4 cut(s) 682, 1166, 1234, 1235
AjnI CCWGG 2 cut(s) 612, 1599
AjuI GAANNNNNNNTTGG 6 cut(s) 247, 279, 725, 757, 1178, 1210
Alw26I GTCTC 2 cut(s) 353, 365
AlwI GGATC 3 cut(s) 211, 1440, 1544
AlwNI CAGNNNCTG 1 cut(s) 1309
AoxI GGCC 2 cut(s) 547, 592
ApeKI GCWGC 3 cut(s) 599, 836, 1325
ApoI RAATTY 5 cut(s) 187, 645, 1000, 1251, 1299
AspLEI GCGC 1 cut(s) 1597
AspS9I GGNCC 1 cut(s) 319
AsuHPI GGTGA 1 cut(s) 479
AvaII GGWCC 1 cut(s) 319
AxyI CCTNAGG 2 cut(s) 206, 1083
BalI TGGCCA 1 cut(s) 549
BanI GGYRCC 1 cut(s) 800
BauI CACGAG 1 cut(s) 1571
BbsI GAAGAC 1 cut(s) 678
BbvI GCAGC 3 cut(s) 611, 823, 1312
BccI CCATC 3 cut(s) 82, 763, 816
BceAI ACGGC 1 cut(s) 523
BciT130I CCWGG 2 cut(s) 614, 1601
BcoDI GTCTC 2 cut(s) 353, 365
BfaI CTAG 2 cut(s) 141, 1467
BfmI CTRYAG 1 cut(s) 478
BfuAI ACCTGC 1 cut(s) 1049
BglII AGATCT 1 cut(s) 856
BisI GCNGC 3 cut(s) 600, 837, 1326
BlsI GCNGC 3 cut(s) 601, 838, 1327
Bme1390I CCNGG 2 cut(s) 614, 1601
Bme18I GGWCC 1 cut(s) 319
BmgT120I GGNCC 1 cut(s) 319
BmiI GGNNCC 8 cut(s) 320, 457, 747, 802, 965, 989, 1226, 1386
BmrFI CCNGG 2 cut(s) 614, 1601
BmrI ACTGGG 1 cut(s) 1176
BmsI GCATC 3 cut(s) 607, 1479, 1590
BmuI ACTGGG 1 cut(s) 1176
BpiI GAAGAC 1 cut(s) 678
BpmI CTGGAG 3 cut(s) 474, 579, 1583
BpuEI CTTGAG 2 cut(s) 1022, 1193
BsaI GGTCTC 1 cut(s) 353
BsaJI CCNNGG 6 cut(s) 427, 505, 663, 934, 946, 1406
Bsc4I CCNNNNNNNGG 4 cut(s) 682, 1166, 1234, 1235
Bse1I ACTGG 2 cut(s) 562, 1171
Bse21I CCTNAGG 2 cut(s) 206, 1083
BseBI CCWGG 2 cut(s) 614, 1601
BseDI CCNNGG 6 cut(s) 427, 505, 663, 934, 946, 1406
BseGI GGATG 3 cut(s) 622, 720, 1581
BseLI CCNNNNNNNGG 4 cut(s) 682, 1166, 1234, 1235
BseMII CTCAG 4 cut(s) 220, 328, 1074, 1091
BseNI ACTGG 2 cut(s) 562, 1171
BseRI GAGGAG 4 cut(s) 717, 803, 956, 1200
BseXI GCAGC 3 cut(s) 611, 823, 1312
BseYI CCCAGC 1 cut(s) 514
BsgI GTGCAG 1 cut(s) 180
BshFI GGCC 2 cut(s) 549, 594
BshNI GGYRCC 1 cut(s) 800
BslFI GGGAC 2 cut(s) 346, 1387
BslI CCNNNNNNNGG 4 cut(s) 682, 1166, 1234, 1235
BsmAI GTCTC 2 cut(s) 353, 365
BsmFI GGGAC 2 cut(s) 346, 1387
BsmI GAATGC 1 cut(s) 170
BsnI GGCC 2 cut(s) 549, 594
Bso31I GGTCTC 1 cut(s) 353
Bsp1407I TGTACA 2 cut(s) 1019, 1050
Bsp143I GATC 5 cut(s) 216, 407, 856, 1432, 1549
Bsp19I CCATGG 1 cut(s) 663
BspACI CCGC 2 cut(s) 1206, 1586
BspANI GGCC 2 cut(s) 549, 594
BspCNI CTCAG 4 cut(s) 219, 327, 1075, 1090
BspLI GGNNCC 8 cut(s) 320, 457, 747, 802, 965, 989, 1226, 1386
BspMI ACCTGC 1 cut(s) 1049
BspPI GGATC 3 cut(s) 211, 1440, 1544
BspT107I GGYRCC 1 cut(s) 800
BspTNI GGTCTC 1 cut(s) 353
BsrBI CCGCTC 1 cut(s) 1208
BsrGI TGTACA 2 cut(s) 1019, 1050
BsrI ACTGG 2 cut(s) 562, 1171
BssECI CCNNGG 6 cut(s) 427, 505, 663, 934, 946, 1406
BssMI GATC 5 cut(s) 216, 407, 856, 1432, 1549
BssSI CACGAG 1 cut(s) 1571
BssT1I CCWWGG 5 cut(s) 427, 663, 934, 946, 1406
Bst2BI CACGAG 1 cut(s) 1571
Bst2UI CCWGG 2 cut(s) 614, 1601
Bst4CI ACNGT 8 cut(s) 92, 164, 181, 763, 769, 778, 889, 919
Bst6I CTCTTC 2 cut(s) 22, 1298
BstAUI TGTACA 2 cut(s) 1019, 1050
BstC8I GCNNGC 3 cut(s) 709, 1323, 1413
BstDEI CTNAG 6 cut(s) 120, 206, 314, 843, 1077, 1083
BstDSI CCRYGG 2 cut(s) 505, 663
BstF5I GGATG 3 cut(s) 622, 720, 1581
BstHHI GCGC 1 cut(s) 1597
BstKTI GATC 5 cut(s) 219, 410, 859, 1435, 1552
BstMAI GTCTC 2 cut(s) 353, 365
BstMBI GATC 5 cut(s) 216, 407, 856, 1432, 1549
BstMWI GCNNNNNNNGC 5 cut(s) 906, 1064, 1177, 1594, 1601
BstNI CCWGG 2 cut(s) 614, 1601
BstSCI CCNGG 2 cut(s) 612, 1599
BstSFI CTRYAG 1 cut(s) 478
BstV1I GCAGC 3 cut(s) 611, 823, 1312
BstV2I GAAGAC 1 cut(s) 678
BstX2I RGATCY 2 cut(s) 856, 1432
BstXI CCANNNNNNTGG 2 cut(s) 557, 790
BstYI RGATCY 2 cut(s) 856, 1432
Bsu36I CCTNAGG 2 cut(s) 206, 1083
BsuRI GGCC 2 cut(s) 549, 594
BtgI CCRYGG 2 cut(s) 505, 663
BtsCI GGATG 3 cut(s) 622, 720, 1581
BtsIMutI CAGTG 1 cut(s) 1473
BveI ACCTGC 1 cut(s) 1049
Cac8I GCNNGC 3 cut(s) 709, 1323, 1413
CaiI CAGNNNCTG 1 cut(s) 1309
CfoI GCGC 1 cut(s) 1597
Cfr13I GGNCC 1 cut(s) 319
Csp6I GTAC 5 cut(s) 144, 573, 1020, 1051, 1306
CviAII CATG 6 cut(s) 335, 441, 664, 1317, 1381, 1605
CviQI GTAC 5 cut(s) 144, 573, 1020, 1051, 1306
DdeI CTNAG 6 cut(s) 120, 206, 314, 843, 1077, 1083
DpnI GATC 5 cut(s) 218, 409, 858, 1434, 1551
DpnII GATC 5 cut(s) 216, 407, 856, 1432, 1549
EaeI YGGCCR 1 cut(s) 547
Eam1104I CTCTTC 2 cut(s) 22, 1298
EarI CTCTTC 2 cut(s) 22, 1298
Eco130I CCWWGG 5 cut(s) 427, 663, 934, 946, 1406
Eco31I GGTCTC 1 cut(s) 353
Eco32I GATATC 1 cut(s) 424
Eco47I GGWCC 1 cut(s) 319
Eco57I CTGAAG 3 cut(s) 207, 1497, 1549
Eco81I CCTNAGG 2 cut(s) 206, 1083
EcoRI GAATTC 1 cut(s) 645
EcoRII CCWGG 2 cut(s) 612, 1599
EcoRV GATATC 1 cut(s) 424
EcoT14I CCWWGG 5 cut(s) 427, 663, 934, 946, 1406
ErhI CCWWGG 5 cut(s) 427, 663, 934, 946, 1406
FaeI CATG 6 cut(s) 338, 444, 667, 1320, 1384, 1608
FalI AAGNNNNNCTT 4 cut(s) 1106, 1138, 1499, 1531
FaqI GGGAC 2 cut(s) 346, 1387
FatI CATG 6 cut(s) 334, 440, 663, 1316, 1380, 1604
FauI CCCGC 1 cut(s) 1593
FauNDI CATATG 3 cut(s) 568, 1231, 1417
FblI GTMKAC 1 cut(s) 390
Fnu4HI GCNGC 3 cut(s) 600, 837, 1326
FokI GGATG 3 cut(s) 629, 707, 1568
Fsp4HI GCNGC 3 cut(s) 600, 837, 1326
FspBI CTAG 2 cut(s) 141, 1467
GlaI GCGC 1 cut(s) 1596
GluI GCNGC 3 cut(s) 600, 837, 1326
GsaI CCCAGC 1 cut(s) 518
GsuI CTGGAG 3 cut(s) 474, 579, 1583
HaeIII GGCC 2 cut(s) 549, 594
HhaI GCGC 1 cut(s) 1597
Hin1II CATG 6 cut(s) 338, 444, 667, 1320, 1384, 1608
Hin6I GCGC 1 cut(s) 1595
HinP1I GCGC 1 cut(s) 1595
HincII GTYRAC 1 cut(s) 895
HindII GTYRAC 1 cut(s) 895
HindIII AAGCTT 2 cut(s) 401, 709
HinfI GANTC 5 cut(s) 263, 445, 717, 1156, 1259
HphI GGTGA 1 cut(s) 479
Hpy166II GTNNAC 4 cut(s) 391, 475, 895, 1022
Hpy188I TCNGA 6 cut(s) 226, 323, 692, 1138, 1215, 1258
Hpy188III TCNNGA 4 cut(s) 650, 1114, 1160, 1436
Hpy8I GTNNAC 4 cut(s) 391, 475, 895, 1022
HpyAV CCTTC 3 cut(s) 231, 338, 1282
HpyCH4III ACNGT 8 cut(s) 92, 164, 181, 763, 769, 778, 889, 919
HpyCH4V TGCA 9 cut(s) 170, 197, 440, 488, 528, 566, 599, 979, 1328
HpyF10VI GCNNNNNNNGC 5 cut(s) 906, 1064, 1177, 1594, 1601
HpyF3I CTNAG 6 cut(s) 120, 206, 314, 843, 1077, 1083
Hsp92II CATG 6 cut(s) 338, 444, 667, 1320, 1384, 1608
HspAI GCGC 1 cut(s) 1595
Kzo9I GATC 5 cut(s) 216, 407, 856, 1432, 1549
LmnI GCTCC 7 cut(s) 455, 704, 816, 969, 1213, 1390, 1602
Lsp1109I GCAGC 3 cut(s) 611, 823, 1312
LweI GCATC 3 cut(s) 607, 1479, 1590
MaeI CTAG 2 cut(s) 141, 1467
MaeIII GTNAC 5 cut(s) 763, 919, 1061, 1393, 1493
MalI GATC 5 cut(s) 218, 409, 858, 1434, 1551
MbiI CCGCTC 1 cut(s) 1208
MboI GATC 5 cut(s) 216, 407, 856, 1432, 1549
MboII GAAGA 9 cut(s) 9, 29, 48, 69, 683, 745, 1211, 1285, 1555
MflI RGATCY 2 cut(s) 856, 1432
MlsI TGGCCA 1 cut(s) 549
MluNI TGGCCA 1 cut(s) 549
MlyI GAGTC 1 cut(s) 1268
MmeI TCCRAC 1 cut(s) 1176
Mox20I TGGCCA 1 cut(s) 549
MscI TGGCCA 1 cut(s) 549
MseI TTAA 3 cut(s) 414, 957, 1536
MslI CAYNNNNRTG 2 cut(s) 339, 1284
Msp20I TGGCCA 1 cut(s) 549
MspA1I CMGCKG 2 cut(s) 518, 602
MspR9I CCNGG 2 cut(s) 614, 1601
Mva1269I GAATGC 1 cut(s) 170
MvaI CCWGG 2 cut(s) 614, 1601
MwoI GCNNNNNNNGC 5 cut(s) 906, 1064, 1177, 1594, 1601
NcoI CCATGG 1 cut(s) 663
NdeI CATATG 3 cut(s) 568, 1231, 1417
NdeII GATC 5 cut(s) 216, 407, 856, 1432, 1549
NlaIII CATG 6 cut(s) 338, 444, 667, 1320, 1384, 1608
NlaIV GGNNCC 8 cut(s) 320, 457, 747, 802, 965, 989, 1226, 1386
NmuCI GTSAC 3 cut(s) 763, 919, 1393
PctI GAATGC 1 cut(s) 170
PfeI GAWTC 4 cut(s) 263, 445, 717, 1156
PflFI GACNNNGTC 1 cut(s) 1142
PfoI TCCNGGA 1 cut(s) 612
PkrI GCNGC 3 cut(s) 601, 838, 1327
PleI GAGTC 1 cut(s) 1267
PpsI GAGTC 1 cut(s) 1267
Psp6I CCWGG 2 cut(s) 612, 1599
PspFI CCCAGC 1 cut(s) 514
PspGI CCWGG 2 cut(s) 612, 1599
PspN4I GGNNCC 8 cut(s) 320, 457, 747, 802, 965, 989, 1226, 1386
PspPI GGNCC 1 cut(s) 319
PstNI CAGNNNCTG 1 cut(s) 1309
PsuI RGATCY 2 cut(s) 856, 1432
PsyI GACNNNGTC 1 cut(s) 1142
PvuII CAGCTG 2 cut(s) 518, 602
RsaI GTAC 5 cut(s) 145, 574, 1021, 1052, 1307
RsaNI GTAC 5 cut(s) 144, 573, 1020, 1051, 1306
RseI CAYNNNNRTG 2 cut(s) 339, 1284
SaqAI TTAA 3 cut(s) 414, 957, 1536
SatI GCNGC 3 cut(s) 600, 837, 1326
Sau3AI GATC 5 cut(s) 216, 407, 856, 1432, 1549
Sau96I GGNCC 1 cut(s) 319
SchI GAGTC 1 cut(s) 1268
ScrFI CCNGG 2 cut(s) 614, 1601
SfaNI GCATC 3 cut(s) 607, 1479, 1590
SfcI CTRYAG 1 cut(s) 478
SinI GGWCC 1 cut(s) 319
SmiMI CAYNNNNRTG 2 cut(s) 339, 1284
SmlI CTYRAG 2 cut(s) 1037, 1172
SmoI CTYRAG 2 cut(s) 1037, 1172
SsiI CCGC 2 cut(s) 1206, 1586
SspMI CTAG 2 cut(s) 141, 1467
StyD4I CCNGG 2 cut(s) 612, 1599
StyI CCWWGG 5 cut(s) 427, 663, 934, 946, 1406
TaaI ACNGT 8 cut(s) 92, 164, 181, 763, 769, 778, 889, 919
TaqI TCGA 2 cut(s) 406, 849
TaqII GACCGA 1 cut(s) 669
TatI WGTACW 2 cut(s) 1019, 1050
TfiI GAWTC 4 cut(s) 263, 445, 717, 1156
Tru1I TTAA 3 cut(s) 414, 957, 1536
Tru9I TTAA 3 cut(s) 414, 957, 1536
TscAI CASTG 1 cut(s) 1480
TseFI GTSAC 3 cut(s) 763, 919, 1393
TseI GCWGC 3 cut(s) 599, 836, 1325
Tsp45I GTSAC 3 cut(s) 763, 919, 1393
TspDTI ATGAA 5 cut(s) 48, 232, 357, 370, 1347
TspRI CASTG 1 cut(s) 1480
Tth111I GACNNNGTC 1 cut(s) 1142
VpaK11BI GGWCC 1 cut(s) 319
XapI RAATTY 5 cut(s) 187, 645, 1000, 1251, 1299
XmiI GTMKAC 1 cut(s) 390
XspI CTAG 2 cut(s) 141, 1467
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.