Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003564

Physical Location & Seq

Genomic Coordinates Reverse (-)

12190751 .. 12191320

Gene Structure 570 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ29788

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGTACATAGCAGGTTACGCAAATGGACCTCGGCCCGAGGTTTTGCTACAAGGAAAATCCATATTCAAGACCTACTTCAAAGCCAAATCAGATTTTGTCAAAGACCCGATTTCCGAAACTGGGCTTGAGGGGCTTTGGAAAAGGTTGTTGGAAGAAACCAATCTAGTGATAATTTGGAATCCATATGGGGGAGTGATGAGCAAAATTTCCGAGTCAGCAATACCCTTCCCGCTTAGAAAAGTTCTCTTCAAAATTCAGTACGTGACTGCATGGCTTGCTGAAGATGAAAACGAGGCAAAGCACATAGATTGGATTAGGAAGCTCTACAACTACATGGCTCCTTATGTTACAAAGTCCCCAAGGTACGCATATGTGAATTATAGGGATCTTGATTTAGGGATAAACAAGAAAAGGAACACTAGCATCAATGAAGCAAGTGCTTGGGGTACCAGGTATTTCAAGGACAATTTTTACAGATTGATAAAGATCAAAACCAAAGTTGATCCTCATAACTTCTTCAGGCATGAACAGAGCATCCCACCTCTTATGCTCCAGGCAAGAAATTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000741 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005623 GO:0005911 GO:0006950 GO:0006979 GO:0006996 GO:0006997 GO:0007275 GO:0008150 GO:0008152 GO:0009506 GO:0009553 GO:0009559 GO:0009561 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010197 GO:0016043 GO:0016491 GO:0016614 GO:0016616 GO:0022414 GO:0030054 GO:0030154 GO:0030312 GO:0032501 GO:0032502 GO:0044464 GO:0045551 GO:0048229 GO:0048284 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050268 GO:0050896 GO:0055044 GO:0055114 GO:0061458 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

BBE FAD_binding_4

Protein Analysis

189

Amino Acids

22.18

Weight (kDa)

9.61

Isoelectric Point (pI)

36.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BBE	PF08031	123 - 180	7.4e-21	Berberine and berberine like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003564)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30760 AT1G30760 AT2G34790 AT5G44390 AT5G44400
fragaria_vesca	FvH4_3g10920
malus_domestica	MD05G1268400.v1.1 MD05G1268500.v1.1 MD10G1244500.v1.1
prunus_persica	Prupe.4G096300_v2.0.a1 Prupe.4G096400_v2.0.a1
pyrus_communis	pycom05g25130 pycom05g25140 pycom10g20500
rosa_chinensis	RchiOBHm_Chr5g0017561 RchiOBHm_Chr5g0017591 RchiOBHm_Chr5g0017601 RchiOBHm_Chr5g0017621 RchiOBHm_Chr5g0017641
rosa_laevigata	RLG00000032298 RLG00000032301 RLG00000032302
rosa_multiflora	Rmu_sc0000346.1_g000021 Rmu_sc0000346.1_g000022 Rmu_sc0002565.1_g000007 Rmu_sc0003415.1_g000020
rosa_roxburghii	Rroxscaffold_1G00059870 Rroxscaffold_1G00059880 Rroxscaffold_1G00059890
rosa_rugosa	Rorug05G0036900 Rorug05G0037000 Rorug05G0037100
rosa_wichuraiana	Rw5G011310 Rw5G011320 Rw5G011330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	2
Acc65I	GGTACC	1 cut(s)	446
AccB1I	GGYRCC	1 cut(s)	446
AciI	CCGC	1 cut(s)	230
AclWI	GGATC	2 cut(s)	393, 497
AcsI	RAATTY	3 cut(s)	204, 252, 562
AcuI	CTGAAG	2 cut(s)	300, 502
AfaI	GTAC	4 cut(s)	5, 260, 365, 448
AfiI	CCNNNNNNNGG	2 cut(s)	120, 188
AgsI	TTSAA	4 cut(s)	67, 79, 250, 460
AjnI	CCWGG	2 cut(s)	449, 552
AjuI	GAANNNNNNNTTGG	2 cut(s)	131, 163
AloI	GAACNNNNNNTCC	2 cut(s)	519, 551
AluBI	AGCT	1 cut(s)	322
AluI	AGCT	1 cut(s)	322
AlwI	GGATC	2 cut(s)	393, 497
Ama87I	CYCGRG	1 cut(s)	35
AoxI	GGCC	1 cut(s)	32
ApoI	RAATTY	3 cut(s)	204, 252, 562
Asp718I	GGTACC	1 cut(s)	446
AspS9I	GGNCC	2 cut(s)	26, 33
AvaI	CYCGRG	1 cut(s)	35
AvaII	GGWCC	1 cut(s)	26
BanI	GGYRCC	1 cut(s)	446
BciT130I	CCWGG	2 cut(s)	451, 554
BfaI	CTAG	2 cut(s)	164, 420
BfuAI	ACCTGC	1 cut(s)	2
Bme1390I	CCNGG	2 cut(s)	451, 554
Bme18I	GGWCC	1 cut(s)	26
BmeT110I	CYCGRG	1 cut(s)	35
BmgT120I	GGNCC	2 cut(s)	26, 33
BmiI	GGNNCC	2 cut(s)	339, 448
BmrFI	CCNGG	2 cut(s)	451, 554
BmrI	ACTGGG	1 cut(s)	129
BmsI	GCATC	2 cut(s)	432, 543
BmuI	ACTGGG	1 cut(s)	129
BpmI	CTGGAG	1 cut(s)	536
BpuEI	CTTGAG	1 cut(s)	146
BsaAI	YACGTR	1 cut(s)	262
BsaBI	GATNNNNATC	1 cut(s)	485
BsaJI	CCNNGG	3 cut(s)	29, 36, 359
Bsc4I	CCNNNNNNNGG	2 cut(s)	120, 188
Bse1I	ACTGG	1 cut(s)	124
Bse8I	GATNNNNATC	1 cut(s)	485
BseBI	CCWGG	2 cut(s)	451, 554
BseDI	CCNNGG	3 cut(s)	29, 36, 359
BseGI	GGATG	1 cut(s)	534
BseJI	GATNNNNATC	1 cut(s)	485
BseLI	CCNNNNNNNGG	2 cut(s)	120, 188
BseNI	ACTGG	1 cut(s)	124
BshFI	GGCC	1 cut(s)	34
BshNI	GGYRCC	1 cut(s)	446
BsiHKCI	CYCGRG	1 cut(s)	35
BslFI	GGGAC	1 cut(s)	340
BslI	CCNNNNNNNGG	2 cut(s)	120, 188
BsmFI	GGGAC	1 cut(s)	340
BsnI	GGCC	1 cut(s)	34
BsoBI	CYCGRG	1 cut(s)	35
Bsp1407I	TGTACA	1 cut(s)	3
Bsp143I	GATC	3 cut(s)	385, 486, 502
BspACI	CCGC	1 cut(s)	230
BspANI	GGCC	1 cut(s)	34
BspHI	TCATGA	1 cut(s)	566
BspLI	GGNNCC	2 cut(s)	339, 448
BspMI	ACCTGC	1 cut(s)	2
BspPI	GGATC	2 cut(s)	393, 497
BspT107I	GGYRCC	1 cut(s)	446
BsrGI	TGTACA	1 cut(s)	3
BsrI	ACTGG	1 cut(s)	124
BssECI	CCNNGG	3 cut(s)	29, 36, 359
BssMI	GATC	3 cut(s)	385, 486, 502
BssT1I	CCWWGG	1 cut(s)	359
Bst2UI	CCWGG	2 cut(s)	451, 554
Bst6I	CTCTTC	1 cut(s)	251
BstAPI	GCANNNNNTGC	1 cut(s)	275
BstAUI	TGTACA	1 cut(s)	3
BstBAI	YACGTR	1 cut(s)	262
BstC8I	GCNNGC	1 cut(s)	276
BstDEI	CTNAG	1 cut(s)	233
BstF5I	GGATG	1 cut(s)	534
BstKTI	GATC	3 cut(s)	388, 489, 505
BstMBI	GATC	3 cut(s)	385, 486, 502
BstMWI	GCNNNNNNNGC	3 cut(s)	17, 130, 275
BstNI	CCWGG	2 cut(s)	451, 554
BstSCI	CCNGG	2 cut(s)	449, 552
BstX2I	RGATCY	1 cut(s)	385
BstYI	RGATCY	1 cut(s)	385
BsuRI	GGCC	1 cut(s)	34
BtsCI	GGATG	1 cut(s)	534
BveI	ACCTGC	1 cut(s)	2
Cac8I	GCNNGC	1 cut(s)	276
CciI	TCATGA	1 cut(s)	566
Cfr13I	GGNCC	2 cut(s)	26, 33
CsiI	ACCWGGT	1 cut(s)	449
Csp6I	GTAC	4 cut(s)	4, 259, 364, 447
CviAII	CATG	4 cut(s)	270, 334, 524, 567
CviJI	RGCY	7 cut(s)	34, 83, 124, 133, 274, 322, 338
CviKI_1	RGCY	7 cut(s)	34, 83, 124, 133, 274, 322, 338
CviQI	GTAC	4 cut(s)	4, 259, 364, 447
DdeI	CTNAG	1 cut(s)	233
DpnI	GATC	3 cut(s)	387, 488, 504
DpnII	GATC	3 cut(s)	385, 486, 502
Eam1104I	CTCTTC	1 cut(s)	251
EarI	CTCTTC	1 cut(s)	251
Eco130I	CCWWGG	1 cut(s)	359
Eco47I	GGWCC	1 cut(s)	26
Eco57I	CTGAAG	2 cut(s)	300, 502
Eco88I	CYCGRG	1 cut(s)	35
EcoRII	CCWGG	2 cut(s)	449, 552
EcoT14I	CCWWGG	1 cut(s)	359
ErhI	CCWWGG	1 cut(s)	359
FaeI	CATG	4 cut(s)	273, 337, 527, 570
FalI	AAGNNNNNCTT	2 cut(s)	59, 91
FaqI	GGGAC	1 cut(s)	340
FatI	CATG	4 cut(s)	269, 333, 523, 566
FauI	CCCGC	1 cut(s)	237
FauNDI	CATATG	2 cut(s)	184, 370
FokI	GGATG	1 cut(s)	521
FspBI	CTAG	2 cut(s)	164, 420
GsuI	CTGGAG	1 cut(s)	536
HaeIII	GGCC	1 cut(s)	34
Hin1II	CATG	4 cut(s)	273, 337, 527, 570
HinfI	GANTC	2 cut(s)	178, 212
Hpy188I	TCNGA	3 cut(s)	91, 115, 211
Hpy188III	TCNNGA	3 cut(s)	67, 389, 567
HpyAV	CCTTC	1 cut(s)	235
HpyCH4IV	ACGT	1 cut(s)	261
HpyCH4V	TGCA	1 cut(s)	269
HpyF10VI	GCNNNNNNNGC	3 cut(s)	17, 130, 275
HpyF3I	CTNAG	1 cut(s)	233
HpySE526I	ACGT	1 cut(s)	261
Hsp92II	CATG	4 cut(s)	273, 337, 527, 570
KpnI	GGTACC	1 cut(s)	450
Kzo9I	GATC	3 cut(s)	385, 486, 502
LmnI	GCTCC	2 cut(s)	343, 555
LpnPI	CCDG	6 cut(s)	105, 436, 463, 505, 539, 566
LweI	GCATC	2 cut(s)	432, 543
MabI	ACCWGGT	1 cut(s)	449
MaeI	CTAG	2 cut(s)	164, 420
MaeII	ACGT	1 cut(s)	261
MaeIII	GTNAC	3 cut(s)	14, 262, 346
MalI	GATC	3 cut(s)	387, 488, 504
MboI	GATC	3 cut(s)	385, 486, 502
MboII	GAAGA	4 cut(s)	164, 238, 293, 508
MflI	RGATCY	1 cut(s)	385
MluCI	AATT	6 cut(s)	171, 204, 252, 376, 466, 562
MlyI	GAGTC	1 cut(s)	221
MmeI	TCCRAC	1 cut(s)	129
MnlI	CCTC	6 cut(s)	31, 39, 121, 286, 516, 552
MspR9I	CCNGG	2 cut(s)	451, 554
MvaI	CCWGG	2 cut(s)	451, 554
MwoI	GCNNNNNNNGC	3 cut(s)	17, 130, 275
NdeI	CATATG	2 cut(s)	184, 370
NdeII	GATC	3 cut(s)	385, 486, 502
NlaIII	CATG	4 cut(s)	273, 337, 527, 570
NlaIV	GGNNCC	2 cut(s)	339, 448
NmeAIII	GCCGAG	1 cut(s)	10
NmuCI	GTSAC	1 cut(s)	262
PagI	TCATGA	1 cut(s)	566
PfeI	GAWTC	1 cut(s)	178
PleI	GAGTC	1 cut(s)	220
PpsI	GAGTC	1 cut(s)	220
Ppu21I	YACGTR	1 cut(s)	262
Psp6I	CCWGG	2 cut(s)	449, 552
PspGI	CCWGG	2 cut(s)	449, 552
PspN4I	GGNNCC	2 cut(s)	339, 448
PspPI	GGNCC	2 cut(s)	26, 33
PsuI	RGATCY	1 cut(s)	385
RsaI	GTAC	4 cut(s)	5, 260, 365, 448
RsaNI	GTAC	4 cut(s)	4, 259, 364, 447
Sau3AI	GATC	3 cut(s)	385, 486, 502
Sau96I	GGNCC	2 cut(s)	26, 33
SchI	GAGTC	1 cut(s)	221
ScrFI	CCNGG	2 cut(s)	451, 554
SexAI	ACCWGGT	1 cut(s)	449
SfaNI	GCATC	2 cut(s)	432, 543
SinI	GGWCC	1 cut(s)	26
SmlI	CTYRAG	1 cut(s)	125
SmoI	CTYRAG	1 cut(s)	125
Sse9I	AATT	6 cut(s)	171, 204, 252, 376, 466, 562
SsiI	CCGC	1 cut(s)	230
SspMI	CTAG	2 cut(s)	164, 420
StyD4I	CCNGG	2 cut(s)	449, 552
StyI	CCWWGG	1 cut(s)	359
TaiI	ACGT	1 cut(s)	264
TasI	AATT	6 cut(s)	171, 204, 252, 376, 466, 562
TatI	WGTACW	1 cut(s)	3
TfiI	GAWTC	1 cut(s)	178
TseFI	GTSAC	1 cut(s)	262
Tsp45I	GTSAC	1 cut(s)	262
TspDTI	ATGAA	4 cut(s)	300, 444, 540, 555
VpaK11BI	GGWCC	1 cut(s)	26
XapI	RAATTY	3 cut(s)	204, 252, 562
XspI	CTAG	2 cut(s)	164, 420

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.