Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0003564

Physical Location & Seq

Genomic Coordinates Forward (+)

33933801 .. 33934746

Gene Structure 946 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1244500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGGGGGAGGACTTATTTTGGGCAATAAGAGGAGGTGGAGGAGCAAGCTTTGGAATCATCCTTTGGTGGAAGATAAAGTTAGTTCCAGTTCCACAAAAATGTGACAGTTTTTTCAGTTGCGAAGACCTTGGAACAAGAGTTTTCATACAAGTATCAAATGATAGCAAAACGGGCAACAAAACTATCACAACTGTTTACCAAGCTCAATTTCTTGGAGATTCTAAAATATTACTTAATGTTATGCAAAAAAGCTTCCCTGAATTGGGTTTGACAAGAAATGATTGTACTGAAACAAGTTGGATCAAATCGGTACTATATATAGCAGGGTACCCAAGTGGAACTCCTACTGAGATTTTGCTACAAGGAAAAGCTACCCTACCCAAGATCTACTTCAAAGCCAAGTCAGACTTCGTCAAGGACCCGATTCCAGAAATTACGCTCGAGGGGCTATGGAAGAGGCTGCTGCAAGAAACCTCTCCAGTGATGATTTTGAATCCGTATGGCGGAATGATGAGCAGGATTTCTGAAAGCGCAATACCTTTTCCCCATAGAAATGTTCTCTTCAAAATTCAGTACTTGACTGTATGGCAGGCTGGAGATGAGGCAGAGCACATGGAATGGATTAGGAAGCTTTACAGTTACATGGCTCCTTATGTCACAATGTTTCCAAGGCAGGCATATGTGAATTATAGGGATCTTGATTTGGGGACTAATAAAAAGAGCAGTACAAACTTTATTGAAGCAAATTCTTGGGGTTACAGGTACTTCAAGGACAATTTTAATAGATTGGTGAAAGTTAAGACCAAAATTGATCCTGATAACTTCTTCAGGCATGAACAAAGCATCCCACCTCTTCCACAAACTCAAGGCCATATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005829 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0006979 GO:0008150 GO:0008152 GO:0009505 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0016020 GO:0016491 GO:0016614 GO:0016899 GO:0030054 GO:0030312 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048046 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0055114 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

BBE FAD_binding_4

Protein Analysis

293

Amino Acids

33.51

Weight (kDa)

9.04

Isoelectric Point (pI)

39.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BBE	PF08031	226 - 283	1.6e-21	Berberine and berberine like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003564)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30760 AT1G30760 AT2G34790 AT5G44390 AT5G44400
fragaria_vesca	FvH4_3g10920
malus_domestica	MD05G1268400.v1.1 MD05G1268500.v1.1 MD10G1244500.v1.1
prunus_persica	Prupe.4G096300_v2.0.a1 Prupe.4G096400_v2.0.a1
pyrus_communis	pycom05g25130 pycom05g25140 pycom10g20500
rosa_chinensis	RchiOBHm_Chr5g0017561 RchiOBHm_Chr5g0017591 RchiOBHm_Chr5g0017601 RchiOBHm_Chr5g0017621 RchiOBHm_Chr5g0017641
rosa_laevigata	RLG00000032298 RLG00000032301 RLG00000032302
rosa_multiflora	Rmu_sc0000346.1_g000021 Rmu_sc0000346.1_g000022 Rmu_sc0002565.1_g000007 Rmu_sc0003415.1_g000020
rosa_roxburghii	Rroxscaffold_1G00059870 Rroxscaffold_1G00059880 Rroxscaffold_1G00059890
rosa_rugosa	Rorug05G0036900 Rorug05G0037000 Rorug05G0037100
rosa_wichuraiana	Rw5G011310 Rw5G011320 Rw5G011330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	327
AccB1I	GGYRCC	1 cut(s)	327
AciI	CCGC	1 cut(s)	504
AclWI	GGATC	3 cut(s)	308, 702, 806
AcsI	RAATTY	2 cut(s)	567, 745
AcuI	CTGAAG	1 cut(s)	811
AfaI	GTAC	6 cut(s)	286, 312, 329, 575, 727, 764
AfiI	CCNNNNNNNGG	3 cut(s)	262, 263, 503
AgsI	TTSAA	5 cut(s)	394, 493, 565, 740, 769
AjuI	GAANNNNNNNTTGG	8 cut(s)	46, 78, 192, 224, 374, 392, 406, 424
AloI	GAACNNNNNNTCC	2 cut(s)	828, 860
AluBI	AGCT	5 cut(s)	48, 203, 252, 371, 631
AluI	AGCT	5 cut(s)	48, 203, 252, 371, 631
Alw21I	GWGCWC	1 cut(s)	612
AlwI	GGATC	3 cut(s)	308, 702, 806
Ama87I	CYCGRG	1 cut(s)	440
AoxI	GGCC	1 cut(s)	868
ApeKI	GCWGC	2 cut(s)	460, 463
ApoI	RAATTY	2 cut(s)	567, 745
Asp718I	GGTACC	1 cut(s)	327
AspLEI	GCGC	1 cut(s)	533
AspS9I	GGNCC	1 cut(s)	418
AsuHPI	GGTGA	1 cut(s)	802
AvaI	CYCGRG	1 cut(s)	440
AvaII	GGWCC	1 cut(s)	418
BaeI	ACNNNNGTAYC	2 cut(s)	319, 352
BanI	GGYRCC	1 cut(s)	327
BbsI	GAAGAC	1 cut(s)	129
Bbv12I	GWGCWC	1 cut(s)	612
BbvI	GCAGC	2 cut(s)	447, 450
BglII	AGATCT	1 cut(s)	384
BisI	GCNGC	2 cut(s)	461, 464
BlsI	GCNGC	2 cut(s)	462, 465
BmcAI	AGTACT	1 cut(s)	575
Bme18I	GGWCC	1 cut(s)	418
BmeT110I	CYCGRG	1 cut(s)	440
BmgT120I	GGNCC	1 cut(s)	418
BmiI	GGNNCC	3 cut(s)	329, 420, 648
BmsI	GCATC	1 cut(s)	852
BpiI	GAAGAC	1 cut(s)	129
BpmI	CTGGAG	2 cut(s)	462, 615
BpuEI	CTTGAG	1 cut(s)	849
BsaJI	CCNNGG	2 cut(s)	127, 668
Bsc4I	CCNNNNNNNGG	3 cut(s)	262, 263, 503
Bse1I	ACTGG	2 cut(s)	86, 479
BseDI	CCNNGG	2 cut(s)	127, 668
BseGI	GGATG	2 cut(s)	57, 843
BseLI	CCNNNNNNNGG	3 cut(s)	262, 263, 503
BseMII	CTCAG	1 cut(s)	339
BseNI	ACTGG	2 cut(s)	86, 479
BseRI	GAGGAG	2 cut(s)	45, 54
BseXI	GCAGC	2 cut(s)	447, 450
BshFI	GGCC	1 cut(s)	870
BshNI	GGYRCC	1 cut(s)	327
BsiHKAI	GWGCWC	1 cut(s)	612
BsiHKCI	CYCGRG	1 cut(s)	440
BslFI	GGGAC	1 cut(s)	721
BslI	CCNNNNNNNGG	3 cut(s)	262, 263, 503
BsmFI	GGGAC	1 cut(s)	721
BsnI	GGCC	1 cut(s)	870
BsoBI	CYCGRG	1 cut(s)	440
Bsp1286I	GDGCHC	1 cut(s)	612
Bsp143I	GATC	4 cut(s)	300, 384, 694, 811
BspACI	CCGC	1 cut(s)	504
BspANI	GGCC	1 cut(s)	870
BspCNI	CTCAG	1 cut(s)	340
BspLI	GGNNCC	3 cut(s)	329, 420, 648
BspPI	GGATC	3 cut(s)	308, 702, 806
BspT107I	GGYRCC	1 cut(s)	327
BsrI	ACTGG	2 cut(s)	86, 479
BssECI	CCNNGG	2 cut(s)	127, 668
BssMI	GATC	4 cut(s)	300, 384, 694, 811
BssT1I	CCWWGG	2 cut(s)	127, 668
Bst4CI	ACNGT	4 cut(s)	107, 193, 583, 638
Bst6I	CTCTTC	3 cut(s)	449, 566, 858
BstC8I	GCNNGC	3 cut(s)	46, 591, 675
BstDEI	CTNAG	1 cut(s)	348
BstF5I	GGATG	2 cut(s)	57, 843
BstHHI	GCGC	1 cut(s)	533
BstKTI	GATC	4 cut(s)	303, 387, 697, 814
BstMBI	GATC	4 cut(s)	300, 384, 694, 811
BstMWI	GCNNNNNNNGC	2 cut(s)	171, 445
BstV1I	GCAGC	2 cut(s)	447, 450
BstV2I	GAAGAC	1 cut(s)	129
BstX2I	RGATCY	2 cut(s)	384, 694
BstYI	RGATCY	2 cut(s)	384, 694
BsuRI	GGCC	1 cut(s)	870
BtsCI	GGATG	2 cut(s)	57, 843
BtsIMutI	CAGTG	1 cut(s)	486
Cac8I	GCNNGC	3 cut(s)	46, 591, 675
CfoI	GCGC	1 cut(s)	533
Cfr13I	GGNCC	1 cut(s)	418
Csp6I	GTAC	6 cut(s)	285, 311, 328, 574, 726, 763
CviAII	CATG	3 cut(s)	613, 643, 833
CviQI	GTAC	6 cut(s)	285, 311, 328, 574, 726, 763
DdeI	CTNAG	1 cut(s)	348
DpnI	GATC	4 cut(s)	302, 386, 696, 813
DpnII	GATC	4 cut(s)	300, 384, 694, 811
Eam1104I	CTCTTC	3 cut(s)	449, 566, 858
EarI	CTCTTC	3 cut(s)	449, 566, 858
EciI	GGCGGA	1 cut(s)	519
Eco130I	CCWWGG	2 cut(s)	127, 668
Eco47I	GGWCC	1 cut(s)	418
Eco57I	CTGAAG	1 cut(s)	811
Eco88I	CYCGRG	1 cut(s)	440
EcoO109I	RGGNCCY	1 cut(s)	418
EcoT14I	CCWWGG	2 cut(s)	127, 668
ErhI	CCWWGG	2 cut(s)	127, 668
FaeI	CATG	3 cut(s)	616, 646, 836
FalI	AAGNNNNNCTT	4 cut(s)	374, 406, 392, 424
FaqI	GGGAC	1 cut(s)	721
FatI	CATG	3 cut(s)	612, 642, 832
FauNDI	CATATG	1 cut(s)	679
Fnu4HI	GCNGC	2 cut(s)	461, 464
FokI	GGATG	2 cut(s)	44, 830
Fsp4HI	GCNGC	2 cut(s)	461, 464
GlaI	GCGC	1 cut(s)	532
GluI	GCNGC	2 cut(s)	461, 464
GsuI	CTGGAG	2 cut(s)	462, 615
HaeIII	GGCC	1 cut(s)	870
HhaI	GCGC	1 cut(s)	533
Hin1II	CATG	3 cut(s)	616, 646, 836
Hin6I	GCGC	1 cut(s)	531
HinP1I	GCGC	1 cut(s)	531
HindIII	AAGCTT	3 cut(s)	46, 250, 629
HinfI	GANTC	4 cut(s)	54, 218, 424, 493
HphI	GGTGA	1 cut(s)	802
Hpy166II	GTNNAC	1 cut(s)	196
Hpy188I	TCNGA	2 cut(s)	406, 526
Hpy188III	TCNNGA	3 cut(s)	428, 698, 815
Hpy8I	GTNNAC	1 cut(s)	196
HpyCH4III	ACNGT	4 cut(s)	107, 193, 583, 638
HpyCH4V	TGCA	2 cut(s)	244, 466
HpyF10VI	GCNNNNNNNGC	2 cut(s)	171, 445
HpyF3I	CTNAG	1 cut(s)	348
Hsp92II	CATG	3 cut(s)	616, 646, 836
HspAI	GCGC	1 cut(s)	531
KpnI	GGTACC	1 cut(s)	331
Kzo9I	GATC	4 cut(s)	300, 384, 694, 811
LmnI	GCTCC	2 cut(s)	41, 652
Lsp1109I	GCAGC	2 cut(s)	447, 450
LweI	GCATC	1 cut(s)	852
MaeIII	GTNAC	4 cut(s)	101, 638, 655, 755
MalI	GATC	4 cut(s)	302, 386, 696, 813
MboI	GATC	4 cut(s)	300, 384, 694, 811
MboII	GAAGA	6 cut(s)	82, 134, 466, 553, 817, 845
MflI	RGATCY	2 cut(s)	384, 694
MhlI	GDGCHC	1 cut(s)	612
MluCI	AATT	8 cut(s)	206, 260, 432, 567, 685, 745, 775, 807
MmeI	TCCRAC	1 cut(s)	278
MnlI	CCTC	8 cut(s)	23, 26, 32, 436, 450, 484, 595, 861
MseI	TTAA	3 cut(s)	234, 780, 798
MslI	CAYNNNNRTG	2 cut(s)	97, 552
MwoI	GCNNNNNNNGC	2 cut(s)	171, 445
NdeI	CATATG	1 cut(s)	679
NdeII	GATC	4 cut(s)	300, 384, 694, 811
NlaIII	CATG	3 cut(s)	616, 646, 836
NlaIV	GGNNCC	3 cut(s)	329, 420, 648
NmuCI	GTSAC	2 cut(s)	101, 655
PaeR7I	CTCGAG	1 cut(s)	440
PfeI	GAWTC	4 cut(s)	54, 218, 424, 493
PflFI	GACNNNGTC	1 cut(s)	410
PkrI	GCNGC	2 cut(s)	462, 465
PpuMI	RGGWCCY	1 cut(s)	418
Psp5II	RGGWCCY	1 cut(s)	418
PspN4I	GGNNCC	3 cut(s)	329, 420, 648
PspPI	GGNCC	1 cut(s)	418
PspPPI	RGGWCCY	1 cut(s)	418
PspXI	VCTCGAGB	1 cut(s)	440
PsuI	RGATCY	2 cut(s)	384, 694
PsyI	GACNNNGTC	1 cut(s)	410
RsaI	GTAC	6 cut(s)	286, 312, 329, 575, 727, 764
RsaNI	GTAC	6 cut(s)	285, 311, 328, 574, 726, 763
RseI	CAYNNNNRTG	2 cut(s)	97, 552
SaqAI	TTAA	3 cut(s)	234, 780, 798
SatI	GCNGC	2 cut(s)	461, 464
Sau3AI	GATC	4 cut(s)	300, 384, 694, 811
Sau96I	GGNCC	1 cut(s)	418
ScaI	AGTACT	1 cut(s)	575
SduI	GDGCHC	1 cut(s)	612
SfaNI	GCATC	1 cut(s)	852
Sfr274I	CTCGAG	1 cut(s)	440
SinI	GGWCC	1 cut(s)	418
SlaI	CTCGAG	1 cut(s)	440
SmiMI	CAYNNNNRTG	2 cut(s)	97, 552
SmlI	CTYRAG	2 cut(s)	440, 864
SmoI	CTYRAG	2 cut(s)	440, 864
Sse9I	AATT	8 cut(s)	206, 260, 432, 567, 685, 745, 775, 807
SsiI	CCGC	1 cut(s)	504
SspI	AATATT	1 cut(s)	228
StyI	CCWWGG	2 cut(s)	127, 668
TaaI	ACNGT	4 cut(s)	107, 193, 583, 638
TaqI	TCGA	1 cut(s)	441
TasI	AATT	8 cut(s)	206, 260, 432, 567, 685, 745, 775, 807
TatI	WGTACW	3 cut(s)	284, 573, 725
TfiI	GAWTC	4 cut(s)	54, 218, 424, 493
Tru1I	TTAA	3 cut(s)	234, 780, 798
Tru9I	TTAA	3 cut(s)	234, 780, 798
TscAI	CASTG	1 cut(s)	486
TseFI	GTSAC	2 cut(s)	101, 655
TseI	GCWGC	2 cut(s)	460, 463
Tsp45I	GTSAC	2 cut(s)	101, 655
TspDTI	ATGAA	2 cut(s)	133, 849
TspGWI	ACGGA	1 cut(s)	486
TspRI	CASTG	1 cut(s)	486
Tth111I	GACNNNGTC	1 cut(s)	410
VpaK11BI	GGWCC	1 cut(s)	418
XapI	RAATTY	2 cut(s)	567, 745
XhoI	CTCGAG	1 cut(s)	440
ZrmI	AGTACT	1 cut(s)	575

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.