Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0003564

Physical Location & Seq

Genomic Coordinates Forward (+)

81958059 .. 81959696

Gene Structure 1638 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00059870.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1314 bp

ATGATGCTTCCAAACACTTCAAAATTTGCCCTCTTTCTTTTCCTTCTGCTATCATCGGCTTCATGGGCACATTCCAAAGCTTCAACCCTAGACAGTTTCTACCAATGCCTCTCCGATAACACCGAGATTTTGATACCATTCTCTAAGGCCTTCGTCACCCCAAACAATTCCACATTCCTTCCTACCCTACAGTCCACTGCACAGAACCTCCGGTACTTGACCCCTTCGGTGCCAAAGCCCGAGTTCATCTTCACTCCATTGCTGGATTCCCATGTCCAAGCTGCTGTCATTTGCTCAAAACAGCTTGGAATTCATCTGAGAGTCCGAAGTGGAGGCCATGACTATGAAGCACTCTCTTATGTCTCCCAAACCGAAACACCTTTCATCATTGTAGACCTCGCCAAGCTTCGATCAGTCAACATTGACATCGAAGACAACAGTGCTTGGGTCCAAGCCGTTGTCAAGACCCTTGAGCAAGGCGCCACGAAGCTCCTCCATAGGTATCAACAAGTAGCTGCCACTGAGCTTGATGAAGATCTCTTCATTAGAGTTATCATACAACCAACGGTCATCGACACCAAAAGTGGTAACAAAACTGTTGCGACTATCTACCAAGCTCAGTTTCTTGGAGGCGTTGATAGACTCCTTGATGTTATGGGAACAAGTTTCCCTGAACTGGGTCTGACAAGGAAAGATTGCACACAAACAAGTTGGCTCAAATCTGTGATGTTCATAGCAGGTTACCCAAGTGGAACTTCACCTGAGGTTTTGCTTCAAGGAAAATCCACTTTCAAGAACTACTTCAAAGCCAAGTCAGATTTTGTCAAAGACCCAATTCCGGAATCTGCACTTGAGGGGTTATGGGAAAGGTTATACGAACAAGCCTCTCCTTTAGTGATTTTCAACCCATATGGAGGAATGATGAGCAAGATTTCGGAGTCGGAGATACCTTTCCCACACAGAAAAGGAGTGCTCTTCAAGATTCAGTACCTGACTACATGGCAAAATAAAGATGAAGATGAAGCAGAGCACATGGATTGGATTAGGAAGCTATACAATTACATGGCTCCTTATGTTACGATGTTCCCAAGGCAAGCATATGTGAACTACAGGGATCTTGATTTGGGGATTAACAAGAAGAGCAACACAAGCTTCATTGAAGCAAGTGCTTGGGGTAACAGGTATTTCAAGGACAACTTCAACAAATTGATAAAGATCAAGACCAAAGTCGATCCTGATAACTTCTTCAGGCATGAACAGAGCATCCCACCTCTTCCACTCCCTCTACGAACATCATCTACAACTGTGAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005829 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0006979 GO:0008150 GO:0008152 GO:0009505 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0016020 GO:0016491 GO:0016614 GO:0016899 GO:0030054 GO:0030312 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048046 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0055114 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

BBE FAD_binding_4

Protein Analysis

437

Amino Acids

49.64

Weight (kDa)

8.19

Isoelectric Point (pI)

37.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAD_binding_4	PF01565	81 - 155	1e-05	FAD binding domain
BBE	PF08031	366 - 423	2.5e-20	Berberine and berberine like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003564)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30760 AT1G30760 AT2G34790 AT5G44390 AT5G44400
fragaria_vesca	FvH4_3g10920
malus_domestica	MD05G1268400.v1.1 MD05G1268500.v1.1 MD10G1244500.v1.1
prunus_persica	Prupe.4G096300_v2.0.a1 Prupe.4G096400_v2.0.a1
pyrus_communis	pycom05g25130 pycom05g25140 pycom10g20500
rosa_chinensis	RchiOBHm_Chr5g0017561 RchiOBHm_Chr5g0017591 RchiOBHm_Chr5g0017601 RchiOBHm_Chr5g0017621 RchiOBHm_Chr5g0017641
rosa_laevigata	RLG00000032298 RLG00000032301 RLG00000032302
rosa_multiflora	Rmu_sc0000346.1_g000021 Rmu_sc0000346.1_g000022 Rmu_sc0002565.1_g000007 Rmu_sc0003415.1_g000020
rosa_roxburghii	Rroxscaffold_1G00059870 Rroxscaffold_1G00059880 Rroxscaffold_1G00059890
rosa_rugosa	Rorug05G0036900 Rorug05G0037000 Rorug05G0037100
rosa_wichuraiana	Rw5G011310 Rw5G011320 Rw5G011330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	728
AccB1I	GGYRCC	2 cut(s)	229, 479
AccI	GTMKAC	1 cut(s)	393
AccIII	TCCGGA	1 cut(s)	838
AclWI	GGATC	2 cut(s)	1122, 1226
AcsI	RAATTY	2 cut(s)	23, 309
AcuI	CTGAAG	1 cut(s)	1231
AcyI	GRCGYC	1 cut(s)	480
AfaI	GTAC	2 cut(s)	215, 989
AfiI	CCNNNNNNNGG	4 cut(s)	676, 677, 838, 914
AjuI	GAANNNNNNNTTGG	4 cut(s)	606, 638, 739, 771
AloI	GAACNNNNNNTCC	2 cut(s)	1248, 1280
Alw21I	GWGCWC	2 cut(s)	975, 1032
Alw26I	GTCTC	1 cut(s)	367
AlwI	GGATC	2 cut(s)	1122, 1226
AlwNI	CAGNNNCTG	1 cut(s)	991
Ama87I	CYCGRG	1 cut(s)	239
Aor13HI	TCCGGA	1 cut(s)	838
AoxI	GGCC	2 cut(s)	147, 334
ApeKI	GCWGC	2 cut(s)	281, 515
ApoI	RAATTY	2 cut(s)	23, 309
Asp700I	GAANNNNTTC	1 cut(s)	800
AspLEI	GCGC	1 cut(s)	482
AspS9I	GGNCC	1 cut(s)	448
AsuHPI	GGTGA	2 cut(s)	148, 750
AvaI	CYCGRG	1 cut(s)	239
AvaII	GGWCC	1 cut(s)	448
AxyI	CCTNAGG	1 cut(s)	762
BaeGI	GKGCMC	1 cut(s)	70
BanI	GGYRCC	2 cut(s)	229, 479
BbsI	GAAGAC	1 cut(s)	438
Bbv12I	GWGCWC	2 cut(s)	975, 1032
BbvI	GCAGC	2 cut(s)	268, 502
BceAI	ACGGC	1 cut(s)	440
BcoDI	GTCTC	1 cut(s)	367
BfaI	CTAG	1 cut(s)	89
BfmI	CTRYAG	2 cut(s)	188, 1108
BfoI	RGCGCY	1 cut(s)	483
BfuAI	ACCTGC	1 cut(s)	728
BglII	AGATCT	1 cut(s)	535
BisI	GCNGC	2 cut(s)	282, 516
BlsI	GCNGC	2 cut(s)	283, 517
Bme18I	GGWCC	1 cut(s)	448
BmeT110I	CYCGRG	1 cut(s)	239
BmgT120I	GGNCC	1 cut(s)	448
BmiI	GGNNCC	4 cut(s)	231, 449, 481, 1068
BmrI	ACTGGG	1 cut(s)	686
BmsI	GCATC	1 cut(s)	1272
BmuI	ACTGGG	1 cut(s)	686
BoxI	GACNNNNGTC	1 cut(s)	1226
BpiI	GAAGAC	1 cut(s)	438
BpuEI	CTTGAG	2 cut(s)	491, 872
BsaBI	GATNNNNATC	2 cut(s)	534, 1214
BsaHI	GRCGYC	1 cut(s)	480
BsaJI	CCNNGG	1 cut(s)	1088
BsaWI	WCCGGW	2 cut(s)	210, 838
BsaXI	ACNNNNNCTCC	2 cut(s)	192, 222
Bsc4I	CCNNNNNNNGG	4 cut(s)	676, 677, 838, 914
Bse1I	ACTGG	1 cut(s)	681
Bse21I	CCTNAGG	1 cut(s)	762
Bse3DI	GCAATG	1 cut(s)	257
Bse8I	GATNNNNATC	2 cut(s)	534, 1214
BseAI	TCCGGA	1 cut(s)	838
BseDI	CCNNGG	1 cut(s)	1088
BseGI	GGATG	1 cut(s)	1263
BseJI	GATNNNNATC	2 cut(s)	534, 1214
BseLI	CCNNNNNNNGG	4 cut(s)	676, 677, 838, 914
BseMI	GCAATG	1 cut(s)	257
BseMII	CTCAG	4 cut(s)	308, 513, 632, 753
BseNI	ACTGG	1 cut(s)	681
BseRI	GAGGAG	1 cut(s)	482
BseSI	GKGCMC	1 cut(s)	70
BseXI	GCAGC	2 cut(s)	268, 502
BsgI	GTGCAG	2 cut(s)	183, 831
BshFI	GGCC	2 cut(s)	149, 336
BshNI	GGYRCC	2 cut(s)	229, 479
BsiHKAI	GWGCWC	2 cut(s)	975, 1032
BsiHKCI	CYCGRG	1 cut(s)	239
BsiSI	CCGG	2 cut(s)	211, 839
BslI	CCNNNNNNNGG	4 cut(s)	676, 677, 838, 914
BsmAI	GTCTC	1 cut(s)	367
BsnI	GGCC	2 cut(s)	149, 336
BsoBI	CYCGRG	1 cut(s)	239
Bsp1286I	GDGCHC	3 cut(s)	70, 975, 1032
Bsp13I	TCCGGA	1 cut(s)	838
Bsp143I	GATC	5 cut(s)	410, 535, 1114, 1215, 1231
BspANI	GGCC	2 cut(s)	149, 336
BspCNI	CTCAG	4 cut(s)	309, 514, 631, 754
BspEI	TCCGGA	1 cut(s)	838
BspLI	GGNNCC	4 cut(s)	231, 449, 481, 1068
BspMI	ACCTGC	1 cut(s)	728
BspPI	GGATC	2 cut(s)	1122, 1226
BspQI	GCTCTTC	2 cut(s)	980, 1133
BspT107I	GGYRCC	2 cut(s)	229, 479
BsrDI	GCAATG	1 cut(s)	257
BsrI	ACTGG	1 cut(s)	681
BssECI	CCNNGG	1 cut(s)	1088
BssMI	GATC	5 cut(s)	410, 535, 1114, 1215, 1231
BssNI	GRCGYC	1 cut(s)	480
BssT1I	CCWWGG	1 cut(s)	1088
Bst4CI	ACNGT	6 cut(s)	95, 192, 440, 568, 598, 1306
Bst6I	CTCTTC	4 cut(s)	545, 980, 1133, 1278
BstACI	GRCGYC	1 cut(s)	480
BstC8I	GCNNGC	1 cut(s)	1095
BstDEI	CTNAG	5 cut(s)	144, 317, 522, 618, 762
BstEII	GGTNACC	1 cut(s)	740
BstF5I	GGATG	1 cut(s)	1263
BstH2I	RGCGCY	1 cut(s)	483
BstHHI	GCGC	1 cut(s)	482
BstKTI	GATC	5 cut(s)	413, 538, 1117, 1218, 1234
BstMAI	GTCTC	1 cut(s)	367
BstMBI	GATC	5 cut(s)	410, 535, 1114, 1215, 1231
BstMWI	GCNNNNNNNGC	2 cut(s)	65, 1149
BstPAI	GACNNNNGTC	1 cut(s)	1226
BstPI	GGTNACC	1 cut(s)	740
BstSFI	CTRYAG	2 cut(s)	188, 1108
BstSLI	GKGCMC	1 cut(s)	70
BstV1I	GCAGC	2 cut(s)	268, 502
BstV2I	GAAGAC	1 cut(s)	438
BstX2I	RGATCY	2 cut(s)	535, 1114
BstYI	RGATCY	2 cut(s)	535, 1114
Bsu36I	CCTNAGG	1 cut(s)	762
BsuRI	GGCC	2 cut(s)	149, 336
BtsCI	GGATG	1 cut(s)	1263
BtsI	GCAGTG	1 cut(s)	195
BtsIMutI	CAGTG	3 cut(s)	195, 445, 519
BveI	ACCTGC	1 cut(s)	728
Cac8I	GCNNGC	1 cut(s)	1095
CaiI	CAGNNNCTG	1 cut(s)	991
CfoI	GCGC	1 cut(s)	482
Cfr13I	GGNCC	1 cut(s)	448
Csp6I	GTAC	2 cut(s)	214, 988
CspCI	CAANNNNNGTGG	2 cut(s)	508, 543
CviAII	CATG	7 cut(s)	63, 272, 338, 999, 1033, 1063, 1253
CviQI	GTAC	2 cut(s)	214, 988
DdeI	CTNAG	5 cut(s)	144, 317, 522, 618, 762
DinI	GGCGCC	1 cut(s)	481
DpnI	GATC	5 cut(s)	412, 537, 1116, 1217, 1233
DpnII	GATC	5 cut(s)	410, 535, 1114, 1215, 1231
Eam1104I	CTCTTC	4 cut(s)	545, 980, 1133, 1278
EarI	CTCTTC	4 cut(s)	545, 980, 1133, 1278
Eco130I	CCWWGG	1 cut(s)	1088
Eco147I	AGGCCT	1 cut(s)	149
Eco47I	GGWCC	1 cut(s)	448
Eco57I	CTGAAG	1 cut(s)	1231
Eco81I	CCTNAGG	1 cut(s)	762
Eco88I	CYCGRG	1 cut(s)	239
Eco91I	GGTNACC	1 cut(s)	740
EcoO65I	GGTNACC	1 cut(s)	740
EcoRI	GAATTC	1 cut(s)	309
EcoT14I	CCWWGG	1 cut(s)	1088
EgeI	GGCGCC	1 cut(s)	481
EheI	GGCGCC	1 cut(s)	481
ErhI	CCWWGG	1 cut(s)	1088
FaeI	CATG	7 cut(s)	66, 275, 341, 1002, 1036, 1066, 1256
FalI	AAGNNNNNCTT	6 cut(s)	739, 771, 785, 817, 1181, 1213
FatI	CATG	7 cut(s)	62, 271, 337, 998, 1032, 1062, 1252
FauNDI	CATATG	2 cut(s)	910, 1099
FblI	GTMKAC	1 cut(s)	393
Fnu4HI	GCNGC	2 cut(s)	282, 516
FokI	GGATG	1 cut(s)	1250
Fsp4HI	GCNGC	2 cut(s)	282, 516
FspBI	CTAG	1 cut(s)	89
GlaI	GCGC	1 cut(s)	481
GluI	GCNGC	2 cut(s)	282, 516
HaeII	RGCGCY	1 cut(s)	483
HaeIII	GGCC	2 cut(s)	149, 336
HapII	CCGG	2 cut(s)	211, 839
HhaI	GCGC	1 cut(s)	482
Hin1I	GRCGYC	1 cut(s)	480
Hin1II	CATG	7 cut(s)	66, 275, 341, 1002, 1036, 1066, 1256
Hin6I	GCGC	1 cut(s)	480
HinP1I	GCGC	1 cut(s)	480
HincII	GTYRAC	1 cut(s)	418
HindII	GTYRAC	1 cut(s)	418
HindIII	AAGCTT	3 cut(s)	78, 404, 1150
HinfI	GANTC	6 cut(s)	266, 321, 642, 842, 938, 982
HpaII	CCGG	2 cut(s)	211, 839
HphI	GGTGA	2 cut(s)	148, 750
Hpy166II	GTNNAC	4 cut(s)	195, 394, 418, 1105
Hpy188I	TCNGA	7 cut(s)	115, 318, 326, 684, 817, 937, 943
Hpy188III	TCNNGA	7 cut(s)	463, 793, 839, 979, 1118, 1219, 1235
Hpy8I	GTNNAC	4 cut(s)	195, 394, 418, 1105
HpyAV	CCTTC	4 cut(s)	53, 160, 188, 234
HpyCH4III	ACNGT	6 cut(s)	95, 192, 440, 568, 598, 1306
HpyCH4V	TGCA	3 cut(s)	200, 699, 848
HpyF10VI	GCNNNNNNNGC	2 cut(s)	65, 1149
HpyF3I	CTNAG	5 cut(s)	144, 317, 522, 618, 762
Hsp92I	GRCGYC	1 cut(s)	480
Hsp92II	CATG	7 cut(s)	66, 275, 341, 1002, 1036, 1066, 1256
HspAI	GCGC	1 cut(s)	480
KasI	GGCGCC	1 cut(s)	479
Kpn2I	TCCGGA	1 cut(s)	838
Kzo9I	GATC	5 cut(s)	410, 535, 1114, 1215, 1231
LguI	GCTCTTC	2 cut(s)	980, 1133
LmnI	GCTCC	2 cut(s)	495, 1072
Lsp1109I	GCAGC	2 cut(s)	268, 502
LweI	GCATC	1 cut(s)	1272
MaeI	CTAG	1 cut(s)	89
MaeIII	GTNAC	5 cut(s)	154, 587, 740, 1075, 1175
MalI	GATC	5 cut(s)	412, 537, 1116, 1217, 1233
MboI	GATC	5 cut(s)	410, 535, 1114, 1215, 1231
MboII	GAAGA	9 cut(s)	241, 443, 532, 545, 967, 1028, 1150, 1237, 1265
MflI	RGATCY	2 cut(s)	535, 1114
MhlI	GDGCHC	3 cut(s)	70, 975, 1032
MluCI	AATT	6 cut(s)	23, 166, 309, 834, 1057, 1205
Mly113I	GGCGCC	1 cut(s)	480
MlyI	GAGTC	3 cut(s)	330, 636, 947
MmeI	TCCRAC	1 cut(s)	921
MroI	TCCGGA	1 cut(s)	838
MroXI	GAANNNNTTC	1 cut(s)	800
MseI	TTAA	1 cut(s)	1131
MslI	CAYNNNNRTG	1 cut(s)	342
MspI	CCGG	2 cut(s)	211, 839
MwoI	GCNNNNNNNGC	2 cut(s)	65, 1149
NarI	GGCGCC	1 cut(s)	480
NdeI	CATATG	2 cut(s)	910, 1099
NdeII	GATC	5 cut(s)	410, 535, 1114, 1215, 1231
NlaIII	CATG	7 cut(s)	66, 275, 341, 1002, 1036, 1066, 1256
NlaIV	GGNNCC	4 cut(s)	231, 449, 481, 1068
NmuCI	GTSAC	1 cut(s)	154
PceI	AGGCCT	1 cut(s)	149
PciSI	GCTCTTC	2 cut(s)	980, 1133
PdmI	GAANNNNTTC	1 cut(s)	800
PfeI	GAWTC	3 cut(s)	266, 842, 982
PkrI	GCNGC	2 cut(s)	283, 517
PleI	GAGTC	3 cut(s)	329, 636, 946
PluTI	GGCGCC	1 cut(s)	483
PpsI	GAGTC	3 cut(s)	329, 636, 946
PshAI	GACNNNNGTC	1 cut(s)	1226
PspEI	GGTNACC	1 cut(s)	740
PspN4I	GGNNCC	4 cut(s)	231, 449, 481, 1068
PspPI	GGNCC	1 cut(s)	448
PsrI	GAACNNNNNNTAC	4 cut(s)	197, 229, 1282, 1314
PstNI	CAGNNNCTG	1 cut(s)	991
PsuI	RGATCY	2 cut(s)	535, 1114
RsaI	GTAC	2 cut(s)	215, 989
RsaNI	GTAC	2 cut(s)	214, 988
RseI	CAYNNNNRTG	1 cut(s)	342
SapI	GCTCTTC	2 cut(s)	980, 1133
SaqAI	TTAA	1 cut(s)	1131
SatI	GCNGC	2 cut(s)	282, 516
Sau3AI	GATC	5 cut(s)	410, 535, 1114, 1215, 1231
Sau96I	GGNCC	1 cut(s)	448
SchI	GAGTC	3 cut(s)	330, 636, 947
SduI	GDGCHC	3 cut(s)	70, 975, 1032
SfaNI	GCATC	1 cut(s)	1272
SfcI	CTRYAG	2 cut(s)	188, 1108
SfoI	GGCGCC	1 cut(s)	481
SinI	GGWCC	1 cut(s)	448
SmiMI	CAYNNNNRTG	1 cut(s)	342
SmlI	CTYRAG	2 cut(s)	470, 851
SmoI	CTYRAG	2 cut(s)	470, 851
Sse9I	AATT	6 cut(s)	23, 166, 309, 834, 1057, 1205
SseBI	AGGCCT	1 cut(s)	149
SspDI	GGCGCC	1 cut(s)	479
SspMI	CTAG	1 cut(s)	89
StuI	AGGCCT	1 cut(s)	149
StyI	CCWWGG	1 cut(s)	1088
TaaI	ACNGT	6 cut(s)	95, 192, 440, 568, 598, 1306
TaqI	TCGA	4 cut(s)	409, 429, 573, 1230
TasI	AATT	6 cut(s)	23, 166, 309, 834, 1057, 1205
TfiI	GAWTC	3 cut(s)	266, 842, 982
Tru1I	TTAA	1 cut(s)	1131
Tru9I	TTAA	1 cut(s)	1131
TscAI	CASTG	3 cut(s)	202, 445, 526
TseFI	GTSAC	1 cut(s)	154
TseI	GCWGC	2 cut(s)	281, 515
Tsp45I	GTSAC	1 cut(s)	154
TspRI	CASTG	3 cut(s)	202, 445, 526
VpaK11BI	GGWCC	1 cut(s)	448
XapI	RAATTY	2 cut(s)	23, 309
XmiI	GTMKAC	1 cut(s)	393
XmnI	GAANNNNTTC	1 cut(s)	800
XspI	CTAG	1 cut(s)	89

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.