FvH4_3g10920

Belongs to the oxygen-dependent FAD-linked oxidoreductase family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Reverse (-)
6464566 .. 6466203
1638 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g10920.t1

Sequence Viewer

Length: 1638 bp
ATGATGCTTCCAAACCCTTCAATATTTTCCCTCTTTCTTTTCCTTCTGTTATCATCGGCTTCATGGGCACATCCCAAAACTTCAACCCTAGATAGTTTCAGCCAATGCCTCTCGGATAACACGGAGATTTTGATACCATTCTCTAAGGCCTTCATCACCCCAAACAATTCCACATTCCTTCCTACCCTACAGTCCACTGCACAAAACCTCCGTTATTTGACCCCTTCAGTGCCAAAACCTGAGTTCATTTTCACTCCAATGCTCGACTCTCATGTCCAAGCTGCTGTCATTTGCGCAAAAGAGCTTGGAATCCATCTGAGAGTCCGAAGTGGAGGCCATGACTATGAAGCACTCTCTTATGTCTCCCAAACAGAAACACCTTTCATCATTGTAGACCTTGCCAAGCTTCGATCAGTCAACATTGACATCGAAGACAACAGCGCTTGGGTGCAAGCCGGTGCCTCCATTGGTGAAGTCTACTACAGGATTGCAGAGAAAAGTAAAACACATGGCTACCCTGCCGGACTTTGCACAAGTCTAGGTGTTGGTGGGCACATTACTGGAGGTGCATACGGTACCATGATGAGGAAGTATGGCCTTGGTGCTGACAATGTCGTCGATGCCCATATTGTTGATGCTAGTGGCAGGATTCACAATCGAGAATCGATGGGAGAGGATCTGTTTTGGGCAATCAGAGGAGGTGGTGGAGCTAGTTTTGGTGTCATTCTCTGGTGGAAGATCAAGCTTGTTCCTGTTCCATCAACCGTGACAGTTTTTTCTGTTGTCAAGACCCTTGAGCAAGGCGCCACGAAGCTCCTTCATAGATATCAACAAGTAGCTGCTACTGAGCTTGACGAAGATCTCTTCATTAGAGTTATCATACAACCAACGGTCTTCGACGCCAAAAGTGGCAACAAAACTATCATGACTATCTACCAAGCTCAGTTTCTTGGAGGTGTTGATAGACTCCTTGATGTTATGGGAACAAGCTTCCCGGAACTTGGTCTGACAAGGAAAGATTGCACACAAACAAGTTGGCTGAAATCTGTAATGTACATAGCAGGTTACCCAAGTAACACTCCACCTGAGGTTTTACTTCAAGGAAAATCCACTTTCAAGAACTACTTCAAAGCCAAGTCAGATTTTGTCAAAGACCCAATACCAGAATCTGCGCTTGAGGGGATATGGAAAAGGTTGTACGAACAAGCTTCTCCTTTAATGATATTCAACCCATATGGAGGAATGATGAGCAAGATTTCGGAGTCGGAGATACCTTTCCCACACAGAAAAGGAGTGCTCTTCAAGATTCAGTACCTGACTACATGGCAAAATGGAACTGAAGATGAAGCAGAGCACATGGACTGGATTAGGAAGCTGTACAATTACATGGCTCCTTATGTTACAATGTTCCCAAGGCAAGCATATGTGAACTACAGGGATCTTGATTTGGGGGTTAACAAGAAGAGCAACACAAGCTTCATTGAAGCAAGTGCTTGGGGTAACAGGTATTTCAAGGACAACTTCAACAAACTGATCAAGATCAAGACCAAAGTCGATCCCGATAACTTCTTCAGGCATGAACAGAGCATCCCACCTCTTCCACTCCCTCTACGAACATCATCCACAACTGCAAGGTGA

Protein Analysis

546

Amino Acids

61.06

Weight (kDa)

8.57

Isoelectric Point (pI)

34.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAD_binding_4 PF01565 80 - 218 9.4e-24 FAD binding domain
BBE PF08031 474 - 531 3.5e-20 Berberine and berberine like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 272, 614
Acc16I TGCGCA 1 cut(s) 295
Acc36I ACCTGC 1 cut(s) 1052
Acc65I GGTACC 1 cut(s) 575
AccB1I GGYRCC 3 cut(s) 458, 575, 803
AccI GTMKAC 2 cut(s) 393, 477
AclWI GGATC 3 cut(s) 684, 1446, 1550
AcuI CTGAAG 3 cut(s) 210, 1359, 1555
AcyI GRCGYC 2 cut(s) 804, 900
AfaI GTAC 5 cut(s) 577, 1055, 1199, 1313, 1379
AfeI AGCGCT 1 cut(s) 442
AfiI CCNNNNNNNGG 3 cut(s) 585, 1001, 1238
AjuI GAANNNNNNNTTGG 2 cut(s) 930, 962
AloI GAACNNNNNNTCC 2 cut(s) 1572, 1604
Alw21I GWGCWC 2 cut(s) 1299, 1356
Alw26I GTCTC 1 cut(s) 367
AlwI GGATC 3 cut(s) 684, 1446, 1550
AlwNI CAGNNNCTG 2 cut(s) 1169, 1315
Aor51HI AGCGCT 1 cut(s) 442
AoxI GGCC 3 cut(s) 147, 334, 595
ApeKI GCWGC 2 cut(s) 281, 839
Asp700I GAANNNNTTC 1 cut(s) 1124
Asp718I GGTACC 1 cut(s) 575
AspLEI GCGC 4 cut(s) 296, 443, 806, 1174
AsuC2I CCSGG 1 cut(s) 995
AsuHPI GGTGA 2 cut(s) 148, 482
AxyI CCTNAGG 1 cut(s) 1086
BaeGI GKGCMC 2 cut(s) 70, 555
BanI GGYRCC 3 cut(s) 458, 575, 803
BbsI GAAGAC 2 cut(s) 438, 886
Bbv12I GWGCWC 2 cut(s) 1299, 1356
BbvI GCAGC 2 cut(s) 268, 826
BccI CCATC 3 cut(s) 321, 661, 766
BclI TGATCA 1 cut(s) 1533
BcnI CCSGG 1 cut(s) 995
BcoDI GTCTC 1 cut(s) 367
BfaI CTAG 4 cut(s) 89, 539, 639, 711
BfmI CTRYAG 3 cut(s) 188, 481, 1432
BfoI RGCGCY 2 cut(s) 444, 807
BfuAI ACCTGC 1 cut(s) 1052
BglII AGATCT 1 cut(s) 859
BisI GCNGC 2 cut(s) 282, 840
BlsI GCNGC 2 cut(s) 283, 841
Bme1390I CCNGG 1 cut(s) 995
BmiI GGNNCC 4 cut(s) 460, 577, 805, 1392
BmrFI CCNGG 1 cut(s) 995
BmsI GCATC 3 cut(s) 610, 625, 1596
BoxI GACNNNNGTC 1 cut(s) 1550
BpiI GAAGAC 2 cut(s) 438, 886
BpmI CTGGAG 1 cut(s) 582
BpuEI CTTGAG 2 cut(s) 815, 1196
BpuMI CCSGG 1 cut(s) 995
Bsa29I ATCGAT 1 cut(s) 665
BsaBI GATNNNNATC 1 cut(s) 1538
BsaHI GRCGYC 2 cut(s) 804, 900
BsaJI CCNNGG 2 cut(s) 598, 1412
BsaXI ACNNNNNCTCC 2 cut(s) 192, 222
Bsc4I CCNNNNNNNGG 3 cut(s) 585, 1001, 1238
Bse118I RCCGGY 1 cut(s) 455
Bse1I ACTGG 2 cut(s) 565, 1367
Bse21I CCTNAGG 1 cut(s) 1086
Bse8I GATNNNNATC 1 cut(s) 1538
BseCI ATCGAT 1 cut(s) 665
BseDI CCNNGG 2 cut(s) 598, 1412
BseGI GGATG 3 cut(s) 70, 1587, 1619
BseJI GATNNNNATC 1 cut(s) 1538
BseLI CCNNNNNNNGG 3 cut(s) 585, 1001, 1238
BseMII CTCAG 5 cut(s) 231, 308, 837, 956, 1077
BseNI ACTGG 2 cut(s) 565, 1367
BseRI GAGGAG 1 cut(s) 711
BseSI GKGCMC 2 cut(s) 70, 555
BseXI GCAGC 2 cut(s) 268, 826
BsgI GTGCAG 1 cut(s) 183
BshFI GGCC 3 cut(s) 149, 336, 597
BshNI GGYRCC 3 cut(s) 458, 575, 803
BshVI ATCGAT 1 cut(s) 665
BsiHKAI GWGCWC 2 cut(s) 1299, 1356
BsiSI CCGG 3 cut(s) 456, 522, 995
BslI CCNNNNNNNGG 3 cut(s) 585, 1001, 1238
BsmAI GTCTC 1 cut(s) 367
BsnI GGCC 3 cut(s) 149, 336, 597
Bsp1286I GDGCHC 4 cut(s) 70, 555, 1299, 1356
Bsp1407I TGTACA 2 cut(s) 1053, 1377
Bsp143I GATC 8 cut(s) 410, 676, 738, 859, 1438, 1533, 1539, 1555
BspANI GGCC 3 cut(s) 149, 336, 597
BspCNI CTCAG 5 cut(s) 232, 309, 838, 955, 1078
BspDI ATCGAT 1 cut(s) 665
BspHI TCATGA 1 cut(s) 924
BspLI GGNNCC 4 cut(s) 460, 577, 805, 1392
BspMI ACCTGC 1 cut(s) 1052
BspPI GGATC 3 cut(s) 684, 1446, 1550
BspQI GCTCTTC 2 cut(s) 1304, 1457
BspT107I GGYRCC 3 cut(s) 458, 575, 803
BsrFI RCCGGY 1 cut(s) 455
BsrGI TGTACA 2 cut(s) 1053, 1377
BsrI ACTGG 2 cut(s) 565, 1367
BssAI RCCGGY 1 cut(s) 455
BssECI CCNNGG 2 cut(s) 598, 1412
BssMI GATC 8 cut(s) 410, 676, 738, 859, 1438, 1533, 1539, 1555
BssNI GRCGYC 2 cut(s) 804, 900
BssT1I CCWWGG 2 cut(s) 598, 1412
Bst4CI ACNGT 5 cut(s) 192, 575, 766, 772, 892
Bst6I CTCTTC 4 cut(s) 869, 1304, 1457, 1602
BstACI GRCGYC 2 cut(s) 804, 900
BstAUI TGTACA 2 cut(s) 1053, 1377
BstC8I GCNNGC 2 cut(s) 453, 1419
BstDEI CTNAG 6 cut(s) 144, 240, 317, 846, 942, 1086
BstEII GGTNACC 1 cut(s) 1064
BstF5I GGATG 3 cut(s) 70, 1587, 1619
BstH2I RGCGCY 2 cut(s) 444, 807
BstHHI GCGC 4 cut(s) 296, 443, 806, 1174
BstKTI GATC 8 cut(s) 413, 679, 741, 862, 1441, 1536, 1542, 1558
BstMAI GTCTC 1 cut(s) 367
BstMBI GATC 8 cut(s) 410, 676, 738, 859, 1438, 1533, 1539, 1555
BstMWI GCNNNNNNNGC 2 cut(s) 65, 1473
BstPAI GACNNNNGTC 1 cut(s) 1550
BstPI GGTNACC 1 cut(s) 1064
BstSCI CCNGG 1 cut(s) 993
BstSFI CTRYAG 3 cut(s) 188, 481, 1432
BstSLI GKGCMC 2 cut(s) 70, 555
BstV1I GCAGC 2 cut(s) 268, 826
BstV2I GAAGAC 2 cut(s) 438, 886
BstX2I RGATCY 3 cut(s) 676, 859, 1438
BstYI RGATCY 3 cut(s) 676, 859, 1438
Bsu15I ATCGAT 1 cut(s) 665
Bsu36I CCTNAGG 1 cut(s) 1086
BsuRI GGCC 3 cut(s) 149, 336, 597
BsuTUI ATCGAT 1 cut(s) 665
BtsCI GGATG 3 cut(s) 70, 1587, 1619
BtsI GCAGTG 1 cut(s) 195
BtsIMutI CAGTG 2 cut(s) 195, 234
BveI ACCTGC 1 cut(s) 1052
Cac8I GCNNGC 2 cut(s) 453, 1419
CaiI CAGNNNCTG 2 cut(s) 1169, 1315
CciI TCATGA 1 cut(s) 924
CfoI GCGC 4 cut(s) 296, 443, 806, 1174
Cfr10I RCCGGY 1 cut(s) 455
ClaI ATCGAT 1 cut(s) 665
CseI GACGC 1 cut(s) 908
Csp6I GTAC 5 cut(s) 576, 1054, 1198, 1312, 1378
CviQI GTAC 5 cut(s) 576, 1054, 1198, 1312, 1378
DdeI CTNAG 6 cut(s) 144, 240, 317, 846, 942, 1086
DinI GGCGCC 1 cut(s) 805
DpnI GATC 8 cut(s) 412, 678, 740, 861, 1440, 1535, 1541, 1557
DpnII GATC 8 cut(s) 410, 676, 738, 859, 1438, 1533, 1539, 1555
DrdI GACNNNNNNGTC 2 cut(s) 272, 614
DseDI GACNNNNNNGTC 2 cut(s) 272, 614
Eam1104I CTCTTC 4 cut(s) 869, 1304, 1457, 1602
EarI CTCTTC 4 cut(s) 869, 1304, 1457, 1602
Eco130I CCWWGG 2 cut(s) 598, 1412
Eco147I AGGCCT 1 cut(s) 149
Eco32I GATATC 1 cut(s) 827
Eco47III AGCGCT 1 cut(s) 442
Eco57I CTGAAG 3 cut(s) 210, 1359, 1555
Eco81I CCTNAGG 1 cut(s) 1086
Eco91I GGTNACC 1 cut(s) 1064
EcoO65I GGTNACC 1 cut(s) 1064
EcoRV GATATC 1 cut(s) 827
EcoT14I CCWWGG 2 cut(s) 598, 1412
EgeI GGCGCC 1 cut(s) 805
EheI GGCGCC 1 cut(s) 805
ErhI CCWWGG 2 cut(s) 598, 1412
FalI AAGNNNNNCTT 4 cut(s) 1109, 1141, 1505, 1537
FauNDI CATATG 2 cut(s) 1234, 1423
FbaI TGATCA 1 cut(s) 1533
FblI GTMKAC 2 cut(s) 393, 477
Fnu4HI GCNGC 2 cut(s) 282, 840
FokI GGATG 3 cut(s) 57, 1574, 1606
Fsp4HI GCNGC 2 cut(s) 282, 840
FspBI CTAG 4 cut(s) 89, 539, 639, 711
FspI TGCGCA 1 cut(s) 295
GlaI GCGC 4 cut(s) 295, 442, 805, 1173
GluI GCNGC 2 cut(s) 282, 840
GsuI CTGGAG 1 cut(s) 582
HaeII RGCGCY 2 cut(s) 444, 807
HaeIII GGCC 3 cut(s) 149, 336, 597
HapII CCGG 3 cut(s) 456, 522, 995
HgaI GACGC 1 cut(s) 908
HhaI GCGC 4 cut(s) 296, 443, 806, 1174
Hin1I GRCGYC 2 cut(s) 804, 900
Hin6I GCGC 4 cut(s) 294, 441, 804, 1172
HinP1I GCGC 4 cut(s) 294, 441, 804, 1172
HincII GTYRAC 2 cut(s) 418, 1456
HindII GTYRAC 2 cut(s) 418, 1456
HindIII AAGCTT 5 cut(s) 404, 743, 988, 1206, 1474
HinfI GANTC 9 cut(s) 266, 309, 321, 649, 662, 966, 1166, 1262, 1306
HpaI GTTAAC 1 cut(s) 1456
HpaII CCGG 3 cut(s) 456, 522, 995
HphI GGTGA 2 cut(s) 148, 482
Hpy166II GTNNAC 6 cut(s) 195, 394, 418, 478, 1429, 1456
Hpy188I TCNGA 8 cut(s) 115, 318, 326, 695, 1008, 1141, 1261, 1267
Hpy188III TCNNGA 9 cut(s) 659, 787, 925, 1117, 1303, 1442, 1537, 1543, 1559
Hpy8I GTNNAC 6 cut(s) 195, 394, 418, 478, 1429, 1456
Hpy99I CGWCG 2 cut(s) 620, 902
HpyAV CCTTC 6 cut(s) 27, 53, 160, 188, 234, 827
HpyCH4III ACNGT 5 cut(s) 192, 575, 766, 772, 892
HpyCH4V TGCA 7 cut(s) 200, 451, 491, 531, 569, 1023, 1631
HpyF10VI GCNNNNNNNGC 2 cut(s) 65, 1473
HpyF3I CTNAG 6 cut(s) 144, 240, 317, 846, 942, 1086
Hsp92I GRCGYC 2 cut(s) 804, 900
HspAI GCGC 4 cut(s) 294, 441, 804, 1172
KasI GGCGCC 1 cut(s) 803
KpnI GGTACC 1 cut(s) 579
Ksp22I TGATCA 1 cut(s) 1533
KspAI GTTAAC 1 cut(s) 1456
Kzo9I GATC 8 cut(s) 410, 676, 738, 859, 1438, 1533, 1539, 1555
LguI GCTCTTC 2 cut(s) 1304, 1457
LmnI GCTCC 3 cut(s) 707, 819, 1396
Lsp1109I GCAGC 2 cut(s) 268, 826
LweI GCATC 3 cut(s) 610, 625, 1596
MaeI CTAG 4 cut(s) 89, 539, 639, 711
MaeIII GTNAC 5 cut(s) 766, 1064, 1073, 1399, 1499
MalI GATC 8 cut(s) 412, 678, 740, 861, 1440, 1535, 1541, 1557
MboI GATC 8 cut(s) 410, 676, 738, 859, 1438, 1533, 1539, 1555
MflI RGATCY 3 cut(s) 676, 859, 1438
MhlI GDGCHC 4 cut(s) 70, 555, 1299, 1356
MluCI AATT 2 cut(s) 166, 1381
Mly113I GGCGCC 1 cut(s) 804
MlyI GAGTC 4 cut(s) 260, 330, 960, 1271
MmeI TCCRAC 1 cut(s) 1245
MroXI GAANNNNTTC 1 cut(s) 1124
MseI TTAA 2 cut(s) 1217, 1455
MslI CAYNNNNRTG 2 cut(s) 257, 342
MspI CCGG 3 cut(s) 456, 522, 995
MspR9I CCNGG 1 cut(s) 995
MwoI GCNNNNNNNGC 2 cut(s) 65, 1473
NarI GGCGCC 1 cut(s) 804
NciI CCSGG 1 cut(s) 995
NdeI CATATG 2 cut(s) 1234, 1423
NdeII GATC 8 cut(s) 410, 676, 738, 859, 1438, 1533, 1539, 1555
NlaIV GGNNCC 4 cut(s) 460, 577, 805, 1392
NmuCI GTSAC 1 cut(s) 766
NsbI TGCGCA 1 cut(s) 295
PagI TCATGA 1 cut(s) 924
PceI AGGCCT 1 cut(s) 149
PciSI GCTCTTC 2 cut(s) 1304, 1457
PdmI GAANNNNTTC 1 cut(s) 1124
PfeI GAWTC 5 cut(s) 309, 649, 662, 1166, 1306
PflFI GACNNNGTC 1 cut(s) 611
PfoI TCCNGGA 1 cut(s) 993
PkrI GCNGC 2 cut(s) 283, 841
PleI GAGTC 4 cut(s) 260, 329, 960, 1270
PluTI GGCGCC 1 cut(s) 807
PpsI GAGTC 4 cut(s) 260, 329, 960, 1270
PshAI GACNNNNGTC 1 cut(s) 1550
PspEI GGTNACC 1 cut(s) 1064
PspN4I GGNNCC 4 cut(s) 460, 577, 805, 1392
PstNI CAGNNNCTG 2 cut(s) 1169, 1315
PsuI RGATCY 3 cut(s) 676, 859, 1438
PsyI GACNNNGTC 1 cut(s) 611
RsaI GTAC 5 cut(s) 577, 1055, 1199, 1313, 1379
RsaNI GTAC 5 cut(s) 576, 1054, 1198, 1312, 1378
RseI CAYNNNNRTG 2 cut(s) 257, 342
SapI GCTCTTC 2 cut(s) 1304, 1457
SaqAI TTAA 2 cut(s) 1217, 1455
SatI GCNGC 2 cut(s) 282, 840
Sau3AI GATC 8 cut(s) 410, 676, 738, 859, 1438, 1533, 1539, 1555
SchI GAGTC 4 cut(s) 260, 330, 960, 1271
ScrFI CCNGG 1 cut(s) 995
SduI GDGCHC 4 cut(s) 70, 555, 1299, 1356
SfaNI GCATC 3 cut(s) 610, 625, 1596
SfcI CTRYAG 3 cut(s) 188, 481, 1432
SfoI GGCGCC 1 cut(s) 805
SmiMI CAYNNNNRTG 2 cut(s) 257, 342
SmlI CTYRAG 2 cut(s) 794, 1175
SmoI CTYRAG 2 cut(s) 794, 1175
Sse9I AATT 2 cut(s) 166, 1381
SseBI AGGCCT 1 cut(s) 149
SspDI GGCGCC 1 cut(s) 803
SspI AATATT 1 cut(s) 24
SspMI CTAG 4 cut(s) 89, 539, 639, 711
StuI AGGCCT 1 cut(s) 149
StyD4I CCNGG 1 cut(s) 993
StyI CCWWGG 2 cut(s) 598, 1412
TaaI ACNGT 5 cut(s) 192, 575, 766, 772, 892
TaqI TCGA 8 cut(s) 264, 409, 429, 618, 658, 665, 897, 1554
TasI AATT 2 cut(s) 166, 1381
TatI WGTACW 2 cut(s) 1053, 1377
TfiI GAWTC 5 cut(s) 309, 649, 662, 1166, 1306
Tru1I TTAA 2 cut(s) 1217, 1455
Tru9I TTAA 2 cut(s) 1217, 1455
TscAI CASTG 2 cut(s) 202, 234
TseFI GTSAC 1 cut(s) 766
TseI GCWGC 2 cut(s) 281, 839
Tsp45I GTSAC 1 cut(s) 766
TspGWI ACGGA 2 cut(s) 137, 200
TspRI CASTG 2 cut(s) 202, 234
Tth111I GACNNNGTC 1 cut(s) 611
XmiI GTMKAC 2 cut(s) 393, 477
XmnI GAANNNNTTC 1 cut(s) 1124
XspI CTAG 4 cut(s) 89, 539, 639, 711
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.