Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0003564

Physical Location & Seq

Genomic Coordinates Reverse (-)

4842619 .. 4845010

Gene Structure 2392 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G096400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1647 bp

ATGCTTCTTCCAATTCCAAACCTTTCAATTTTCCCACTCTTTCTTTTTCTTCTGATATCAACTTCATTGACACAACCTCTACCTTCAGTACAAGACAATTTCATCAAATGCCTCTCAGAAAATTCTGAGATTTTAATCCCATTCTCCACTGCCTTAATCACCCCAAACAACTCTACATTCATTCCCACCCTACAATCTACAGCACAGAATCTTAGGTACTTGGTCCCTTCAGTGCCAAAGCCTGAGTTCATTTTCACACCATTGCATGATTCTCATGTCCAAGCTGCTGTCATTTGCTCAAAGCAGCTTGGAATACATCTCAGGGTCAGAAGTGGAGGGCATGATTATGAGGCCCTCTCTTATGTGTCCCAAACTGAAGCACCTTTCATTGTTGTAGACCTTGCCAAACTTCGATCGGTCATCGTCGATATCGAAGACAACAGCTCATGGGTTCAAGCTGGTGCCTCTATTGGTGAAGTTTACTACAGAATTGCACAGAAGAGCAAAACGCATGGCTTCCCTGCTGGGCTTTGCACAAGCTTAGGTGTGGGAGGGCACATAACTGGTGGTGCATATGGTAGCATGATGAGAAAATATGGCCTTGGTGCTGATAATGTCATCGATGCTCGAATCATTGATGTTAGTGGCAGAGTTCTTGACAGGGCAGCCATGGGAGAAGACCTGTTTTGGGCAATCAGAGGAGGTGGAGGAGCGAGCTTTGGCATCATCCTTTGGTGGAAGATAAATCTGGTTCCTGTTCCATCAACGGTGACAGTTTTTACAGTTGCTAAGACCTTGGAAACAGGTGCAACAAAGGTCCTACATAAATGGCAACAAGTAGCTGCTACTGAGCTTGATGAAGATCTCTTCATTAGGGTCGTCATACAATCATCAAAAGACAGCAAAACTGGCACTAAAACTATCACCACTCTTTACCAAGCCCAATTTCTTGGTGATGCTGACAGATTGCTTGATGTTGTGAAAACAAAATTCCCTGAATTGGGTTTGACAAAAAAAGATTGCACAGAAACAAGTTGGCTCAAATCTGTGATGTACATAGCAGGGTACCCAAGTGGAACTCCACCTGAGGTTTTGCTTCAAGGAAAATCAACATTCAAGAACTATTTCAAAGCAAAATCAGATTTTGTCAAAGACCCAATTCCTGAAACTGGGCTTGAGGGGCTTTGGAAAAGGCTGATGGAGGAAGAGAGCCCTCTGGTGATTTTCAATCCATATGGAGGACAGATGAGCAGAATTTCAGAGTCTGAAATTCCCTTCCCTCATAGAAATGGAATTCTCTTTAAAATTCAGTACTTGACTACATGGCAAGATCCCCATGAAGATGAGGCAAAGCACATGGATTGGATTAGGAAGCTTTACAATTACATGGCTCCTTATGCCACAATGTTCCCAAGGCAAGCATATGTGAATTATAGGGATCTTGATTTGGGGATTAACAAGAAGAGCAACATAAGCTTCATTGAAGCAAGTGCTTGGGGTAACAGGTATTTCAAGGACAACTTTAACAGATTGATAAAGATCAAGACCAAAGTTGATCCAGATAACTTCTTCAGGCATGAACAGAGCATCCCTCCTCTTCCACTCCCTAAAAGATCTAGAACTGGTCATCATCAACATAGTCTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005829 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0006979 GO:0008150 GO:0008152 GO:0009505 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0016020 GO:0016491 GO:0016614 GO:0016899 GO:0030054 GO:0030312 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048046 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0055114 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

BBE FAD_binding_4

Protein Analysis

549

Amino Acids

61.44

Weight (kDa)

8.72

Isoelectric Point (pI)

40.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003564)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30760 AT1G30760 AT2G34790 AT5G44390 AT5G44400
fragaria_vesca	FvH4_3g10920
malus_domestica	MD05G1268400.v1.1 MD05G1268500.v1.1 MD10G1244500.v1.1
prunus_persica	Prupe.4G096300_v2.0.a1 Prupe.4G096400_v2.0.a1
pyrus_communis	pycom05g25130 pycom05g25140 pycom10g20500
rosa_chinensis	RchiOBHm_Chr5g0017561 RchiOBHm_Chr5g0017591 RchiOBHm_Chr5g0017601 RchiOBHm_Chr5g0017621 RchiOBHm_Chr5g0017641
rosa_laevigata	RLG00000032298 RLG00000032301 RLG00000032302
rosa_multiflora	Rmu_sc0000346.1_g000021 Rmu_sc0000346.1_g000022 Rmu_sc0002565.1_g000007 Rmu_sc0003415.1_g000020
rosa_roxburghii	Rroxscaffold_1G00059870 Rroxscaffold_1G00059880 Rroxscaffold_1G00059890
rosa_rugosa	Rorug05G0036900 Rorug05G0037000 Rorug05G0037100
rosa_wichuraiana	Rw5G011310 Rw5G011320 Rw5G011330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	1065
AccB1I	GGYRCC	2 cut(s)	461, 1065
AccI	GTMKAC	1 cut(s)	396
AclWI	GGATC	3 cut(s)	1325, 1446, 1550
AcsI	RAATTY	6 cut(s)	121, 989, 1254, 1269, 1293, 1305
AcuI	CTGAAG	4 cut(s)	69, 213, 396, 1555
AfaI	GTAC	5 cut(s)	90, 218, 1055, 1067, 1313
AfiI	CCNNNNNNNGG	5 cut(s)	688, 1000, 1001, 1169, 1238
AgsI	TTSAA	8 cut(s)	27, 455, 1100, 1117, 1129, 1228, 1484, 1513
AjuI	GAANNNNNNNTTGG	2 cut(s)	930, 962
AloI	GAACNNNNNNTCC	2 cut(s)	1572, 1604
AlwI	GGATC	3 cut(s)	1325, 1446, 1550
AlwNI	CAGNNNCTG	1 cut(s)	1265
AoxI	GGCC	2 cut(s)	351, 598
ApeKI	GCWGC	4 cut(s)	284, 304, 665, 842
ApoI	RAATTY	6 cut(s)	121, 989, 1254, 1269, 1293, 1305
Asp700I	GAANNNNTTC	1 cut(s)	1124
Asp718I	GGTACC	1 cut(s)	1065
AspS9I	GGNCC	3 cut(s)	223, 352, 817
AsuHPI	GGTGA	6 cut(s)	151, 485, 781, 916, 965, 1231
AvaII	GGWCC	2 cut(s)	223, 817
AxyI	CCTNAGG	1 cut(s)	1086
BaeGI	GKGCMC	1 cut(s)	558
BaeI	ACNNNNGTAYC	2 cut(s)	1057, 1090
BanI	GGYRCC	2 cut(s)	461, 1065
BanII	GRGCYC	1 cut(s)	1214
BbsI	GAAGAC	2 cut(s)	441, 684
BbvI	GCAGC	4 cut(s)	271, 316, 677, 829
BccI	CCATC	2 cut(s)	769, 1192
BfaI	CTAG	1 cut(s)	1617
BfmI	CTRYAG	3 cut(s)	198, 484, 1643
BglII	AGATCT	2 cut(s)	862, 1613
BisI	GCNGC	4 cut(s)	285, 305, 666, 843
BlsI	GCNGC	4 cut(s)	286, 306, 667, 844
BmcAI	AGTACT	1 cut(s)	1313
Bme18I	GGWCC	2 cut(s)	223, 817
BmgT120I	GGNCC	3 cut(s)	223, 352, 817
BmiI	GGNNCC	5 cut(s)	225, 463, 753, 1067, 1392
BmrI	ACTGGG	1 cut(s)	1179
BmsI	GCATC	4 cut(s)	613, 732, 946, 1596
BmuI	ACTGGG	1 cut(s)	1179
BpiI	GAAGAC	2 cut(s)	441, 684
BplI	GAGNNNNNCTC	4 cut(s)	341, 373, 1576, 1608
Bpu10I	CCTNAGC	1 cut(s)	541
BpuEI	CTTGAG	1 cut(s)	1196
Bsa29I	ATCGAT	1 cut(s)	621
BsaBI	GATNNNNATC	3 cut(s)	134, 861, 1538
BsaJI	CCNNGG	4 cut(s)	601, 669, 795, 1412
Bsc4I	CCNNNNNNNGG	5 cut(s)	688, 1000, 1001, 1169, 1238
Bse1I	ACTGG	4 cut(s)	568, 913, 1174, 1627
Bse21I	CCTNAGG	1 cut(s)	1086
Bse3DI	GCAATG	1 cut(s)	260
Bse8I	GATNNNNATC	3 cut(s)	134, 861, 1538
BseCI	ATCGAT	1 cut(s)	621
BseDI	CCNNGG	4 cut(s)	601, 669, 795, 1412
BseGI	GGATG	2 cut(s)	726, 1587
BseJI	GATNNNNATC	3 cut(s)	134, 861, 1538
BseLI	CCNNNNNNNGG	5 cut(s)	688, 1000, 1001, 1169, 1238
BseMI	GCAATG	1 cut(s)	260
BseMII	CTCAG	6 cut(s)	117, 129, 234, 334, 840, 1077
BseNI	ACTGG	4 cut(s)	568, 913, 1174, 1627
BseRI	GAGGAG	3 cut(s)	714, 723, 1584
BseSI	GKGCMC	1 cut(s)	558
BseXI	GCAGC	4 cut(s)	271, 316, 677, 829
BseYI	CCCAGC	1 cut(s)	524
Bsh1285I	CGRYCG	1 cut(s)	416
BshFI	GGCC	2 cut(s)	353, 600
BshNI	GGYRCC	2 cut(s)	461, 1065
BshVI	ATCGAT	1 cut(s)	621
BsiEI	CGRYCG	1 cut(s)	416
BslFI	GGGAC	2 cut(s)	209, 352
BslI	CCNNNNNNNGG	5 cut(s)	688, 1000, 1001, 1169, 1238
BsmFI	GGGAC	2 cut(s)	209, 352
BsnI	GGCC	2 cut(s)	353, 600
Bsp1286I	GDGCHC	2 cut(s)	558, 1214
Bsp1407I	TGTACA	1 cut(s)	1053
Bsp143I	GATC	7 cut(s)	413, 862, 1330, 1438, 1539, 1555, 1613
Bsp19I	CCATGG	1 cut(s)	669
BspANI	GGCC	2 cut(s)	353, 600
BspCNI	CTCAG	6 cut(s)	118, 128, 235, 333, 841, 1078
BspDI	ATCGAT	1 cut(s)	621
BspLI	GGNNCC	5 cut(s)	225, 463, 753, 1067, 1392
BspPI	GGATC	3 cut(s)	1325, 1446, 1550
BspQI	GCTCTTC	2 cut(s)	494, 1457
BspT107I	GGYRCC	2 cut(s)	461, 1065
BsrDI	GCAATG	1 cut(s)	260
BsrGI	TGTACA	1 cut(s)	1053
BsrI	ACTGG	4 cut(s)	568, 913, 1174, 1627
BssECI	CCNNGG	4 cut(s)	601, 669, 795, 1412
BssMI	GATC	7 cut(s)	413, 862, 1330, 1438, 1539, 1555, 1613
BssT1I	CCWWGG	4 cut(s)	601, 669, 795, 1412
Bst4CI	ACNGT	3 cut(s)	769, 775, 784
Bst6I	CTCTTC	5 cut(s)	494, 872, 1200, 1457, 1602
BstAUI	TGTACA	1 cut(s)	1053
BstC8I	GCNNGC	2 cut(s)	715, 1419
BstDEI	CTNAG	9 cut(s)	115, 126, 212, 243, 320, 541, 789, 849, 1086
BstDSI	CCRYGG	1 cut(s)	669
BstF5I	GGATG	2 cut(s)	726, 1587
BstKTI	GATC	7 cut(s)	416, 865, 1333, 1441, 1542, 1558, 1616
BstMBI	GATC	7 cut(s)	413, 862, 1330, 1438, 1539, 1555, 1613
BstMCI	CGRYCG	1 cut(s)	416
BstMWI	GCNNNNNNNGC	4 cut(s)	909, 1180, 1397, 1473
BstSFI	CTRYAG	3 cut(s)	198, 484, 1643
BstSLI	GKGCMC	1 cut(s)	558
BstV1I	GCAGC	4 cut(s)	271, 316, 677, 829
BstV2I	GAAGAC	2 cut(s)	441, 684
BstX2I	RGATCY	4 cut(s)	862, 1330, 1438, 1613
BstXI	CCANNNNNNTGG	1 cut(s)	950
BstYI	RGATCY	4 cut(s)	862, 1330, 1438, 1613
Bsu15I	ATCGAT	1 cut(s)	621
Bsu36I	CCTNAGG	1 cut(s)	1086
BsuRI	GGCC	2 cut(s)	353, 600
BsuTUI	ATCGAT	1 cut(s)	621
BtgI	CCRYGG	1 cut(s)	669
BtsCI	GGATG	2 cut(s)	726, 1587
BtsI	GCAGTG	1 cut(s)	147
BtsIMutI	CAGTG	2 cut(s)	147, 237
Cac8I	GCNNGC	2 cut(s)	715, 1419
CaiI	CAGNNNCTG	1 cut(s)	1265
Cfr13I	GGNCC	3 cut(s)	223, 352, 817
ClaI	ATCGAT	1 cut(s)	621
Csp6I	GTAC	5 cut(s)	89, 217, 1054, 1066, 1312
CviQI	GTAC	5 cut(s)	89, 217, 1054, 1066, 1312
DdeI	CTNAG	9 cut(s)	115, 126, 212, 243, 320, 541, 789, 849, 1086
DpnI	GATC	7 cut(s)	415, 864, 1332, 1440, 1541, 1557, 1615
DpnII	GATC	7 cut(s)	413, 862, 1330, 1438, 1539, 1555, 1613
DraI	TTTAAA	1 cut(s)	1303
Eam1104I	CTCTTC	5 cut(s)	494, 872, 1200, 1457, 1602
EarI	CTCTTC	5 cut(s)	494, 872, 1200, 1457, 1602
Eco130I	CCWWGG	4 cut(s)	601, 669, 795, 1412
Eco24I	GRGCYC	1 cut(s)	1214
Eco32I	GATATC	2 cut(s)	57, 430
Eco47I	GGWCC	2 cut(s)	223, 817
Eco57I	CTGAAG	4 cut(s)	69, 213, 396, 1555
Eco81I	CCTNAGG	1 cut(s)	1086
EcoO109I	RGGNCCY	2 cut(s)	352, 817
EcoRI	GAATTC	1 cut(s)	1293
EcoRV	GATATC	2 cut(s)	57, 430
EcoT14I	CCWWGG	4 cut(s)	601, 669, 795, 1412
EcoT38I	GRGCYC	1 cut(s)	1214
ErhI	CCWWGG	4 cut(s)	601, 669, 795, 1412
FalI	AAGNNNNNCTT	2 cut(s)	1505, 1537
FaqI	GGGAC	2 cut(s)	209, 352
FauNDI	CATATG	3 cut(s)	574, 1234, 1423
FblI	GTMKAC	1 cut(s)	396
Fnu4HI	GCNGC	4 cut(s)	285, 305, 666, 843
FokI	GGATG	2 cut(s)	713, 1574
FriOI	GRGCYC	1 cut(s)	1214
Fsp4HI	GCNGC	4 cut(s)	285, 305, 666, 843
FspBI	CTAG	1 cut(s)	1617
GluI	GCNGC	4 cut(s)	285, 305, 666, 843
GsaI	CCCAGC	1 cut(s)	528
HaeIII	GGCC	2 cut(s)	353, 600
HindIII	AAGCTT	3 cut(s)	538, 1373, 1474
HinfI	GANTC	4 cut(s)	208, 269, 630, 1262
HphI	GGTGA	6 cut(s)	151, 485, 781, 916, 965, 1231
Hpy166II	GTNNAC	2 cut(s)	397, 481
Hpy188I	TCNGA	8 cut(s)	54, 118, 127, 329, 698, 1141, 1261, 1267
Hpy188III	TCNNGA	7 cut(s)	656, 1117, 1163, 1442, 1543, 1559, 1617
Hpy8I	GTNNAC	2 cut(s)	397, 481
Hpy99I	CGWCG	1 cut(s)	428
HpyAV	CCTTC	3 cut(s)	93, 237, 1285
HpyCH4III	ACNGT	3 cut(s)	769, 775, 784
HpyCH4V	TGCA	6 cut(s)	265, 494, 534, 572, 809, 1023
HpyF10VI	GCNNNNNNNGC	4 cut(s)	909, 1180, 1397, 1473
HpyF3I	CTNAG	9 cut(s)	115, 126, 212, 243, 320, 541, 789, 849, 1086
KpnI	GGTACC	1 cut(s)	1069
Kzo9I	GATC	7 cut(s)	413, 862, 1330, 1438, 1539, 1555, 1613
LguI	GCTCTTC	2 cut(s)	494, 1457
LmnI	GCTCC	2 cut(s)	710, 1396
Lsp1109I	GCAGC	4 cut(s)	271, 316, 677, 829
LweI	GCATC	4 cut(s)	613, 732, 946, 1596
MaeI	CTAG	1 cut(s)	1617
MaeIII	GTNAC	2 cut(s)	769, 1499
MalI	GATC	7 cut(s)	415, 864, 1332, 1440, 1541, 1557, 1615
MboI	GATC	7 cut(s)	413, 862, 1330, 1438, 1539, 1555, 1613
MflI	RGATCY	4 cut(s)	862, 1330, 1438, 1613
MhlI	GDGCHC	2 cut(s)	558, 1214
MlyI	GAGTC	1 cut(s)	1271
MroXI	GAANNNNTTC	1 cut(s)	1124
MseI	TTAA	5 cut(s)	134, 155, 1302, 1455, 1524
MslI	CAYNNNNRTG	3 cut(s)	345, 1287, 1341
MwoI	GCNNNNNNNGC	4 cut(s)	909, 1180, 1397, 1473
NcoI	CCATGG	1 cut(s)	669
NdeI	CATATG	3 cut(s)	574, 1234, 1423
NdeII	GATC	7 cut(s)	413, 862, 1330, 1438, 1539, 1555, 1613
NlaIV	GGNNCC	5 cut(s)	225, 463, 753, 1067, 1392
NmuCI	GTSAC	1 cut(s)	769
PciSI	GCTCTTC	2 cut(s)	494, 1457
PcsI	WCGNNNNNNNCGW	1 cut(s)	429
PdmI	GAANNNNTTC	1 cut(s)	1124
PfeI	GAWTC	3 cut(s)	208, 269, 630
PkrI	GCNGC	4 cut(s)	286, 306, 667, 844
Ple19I	CGATCG	1 cut(s)	416
PleI	GAGTC	1 cut(s)	1270
PpsI	GAGTC	1 cut(s)	1270
PpuMI	RGGWCCY	1 cut(s)	817
Psp5II	RGGWCCY	1 cut(s)	817
PspFI	CCCAGC	1 cut(s)	524
PspN4I	GGNNCC	5 cut(s)	225, 463, 753, 1067, 1392
PspPI	GGNCC	3 cut(s)	223, 352, 817
PspPPI	RGGWCCY	1 cut(s)	817
PstNI	CAGNNNCTG	1 cut(s)	1265
PsuI	RGATCY	4 cut(s)	862, 1330, 1438, 1613
PvuI	CGATCG	1 cut(s)	416
RsaI	GTAC	5 cut(s)	90, 218, 1055, 1067, 1313
RsaNI	GTAC	5 cut(s)	89, 217, 1054, 1066, 1312
RseI	CAYNNNNRTG	3 cut(s)	345, 1287, 1341
SapI	GCTCTTC	2 cut(s)	494, 1457
SaqAI	TTAA	5 cut(s)	134, 155, 1302, 1455, 1524
SatI	GCNGC	4 cut(s)	285, 305, 666, 843
Sau3AI	GATC	7 cut(s)	413, 862, 1330, 1438, 1539, 1555, 1613
Sau96I	GGNCC	3 cut(s)	223, 352, 817
ScaI	AGTACT	1 cut(s)	1313
SchI	GAGTC	1 cut(s)	1271
SduI	GDGCHC	2 cut(s)	558, 1214
SfaNI	GCATC	4 cut(s)	613, 732, 946, 1596
SfcI	CTRYAG	3 cut(s)	198, 484, 1643
SinI	GGWCC	2 cut(s)	223, 817
SmiMI	CAYNNNNRTG	3 cut(s)	345, 1287, 1341
SmlI	CTYRAG	1 cut(s)	1175
SmoI	CTYRAG	1 cut(s)	1175
SspMI	CTAG	1 cut(s)	1617
StyI	CCWWGG	4 cut(s)	601, 669, 795, 1412
TaaI	ACNGT	3 cut(s)	769, 775, 784
TaqI	TCGA	5 cut(s)	412, 426, 432, 621, 628
TaqII	GACCGA	1 cut(s)	406
TatI	WGTACW	3 cut(s)	88, 1053, 1311
TfiI	GAWTC	3 cut(s)	208, 269, 630
Tru1I	TTAA	5 cut(s)	134, 155, 1302, 1455, 1524
Tru9I	TTAA	5 cut(s)	134, 155, 1302, 1455, 1524
TscAI	CASTG	2 cut(s)	154, 237
TseFI	GTSAC	1 cut(s)	769
TseI	GCWGC	4 cut(s)	284, 304, 665, 842
Tsp45I	GTSAC	1 cut(s)	769
TspRI	CASTG	2 cut(s)	154, 237
VpaK11BI	GGWCC	2 cut(s)	223, 817
XapI	RAATTY	6 cut(s)	121, 989, 1254, 1269, 1293, 1305
XbaI	TCTAGA	1 cut(s)	1616
XmiI	GTMKAC	1 cut(s)	396
XmnI	GAANNNNTTC	1 cut(s)	1124
XspI	CTAG	1 cut(s)	1617
ZrmI	AGTACT	1 cut(s)	1313

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.