AT1G31180

Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Reverse (-)
11142461 .. 11144717
2257 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G31180.1

Sequence Viewer

Length: 1215 bp
ATGGCGGCGTTTTTGCAAACTAACATCCGTCTGGAGATCATACCGGGAAGATACAGTTCTCTCACCGATCATAAGTTTCGTGCGCCGTATCGAATTAGGTGCGCCGCCGCTTCACCGGTGAAAAAACGGTATAACATCACTCTGCTTCCCGGCGATGGTATCGGTCCAGAAGTTATATCTGTTGCTAAGAATGTGCTTCAGAAAGCTGGATTTCTCCAAGGACTAGAGTTTGATTTCCAGGAGATGCCTTTCGGCGGAGCAGCTTTGGATTTGGTCGGAGTTCCATTGCCGGAGGAAACTTCCACTGCTGCTAAACAGTCTGATGCCATTCTTCTTGGAGCTATCGGAGGGTACAAATGGGACAAGAATGAGAAACATCTGAGACCTGAGATGGGTCTGCTTAACATTCGAAGAGATCTCAATGTCTTTGCTAATTTGAGACCTGCTACAGTTTTACCACAGCTAGTTGATGCTTCCACACTGAAGAAAGAAGTAGCACAAGGTGTTGATATGATGATTGTAAGGGAGCTCACTGGAGGTATTTACTTTGGAGAGCCAAGAGGCATTACGATCAACGAAAATGGCGAAGAAGTCGGTTTTAATACAGAGATCTACGCTGCTCACGAGATTGACAGAATTGCTCGTGTTGCATTCGAGACTGCTAGGAAAAGGCGTGGCAAGCTGTGTTCTGTTGACAAAGCCAATGTCTTGGATGCATCAATATTGTGGAGGAAAAGAGTAACAGCTTTAGCCTCTGAATATCCAGATGTTGAACTATCACATATGTATGTCGATAATGCTGCGATGCAGCTTGTCCGTGACCCGAAACAGTTTGACACAATCGTCACCAATAACATTTTTGGTGATATATTGTCTGATGAAGCTTCAATGATCACTGGTAGCATTGGGATGCTTCCATCTGCAAGTCTTGGTGAATCGGGACCTGGACTCTTTGAACCTATACATGGTTCAGCACCAGATATAGCTGGACAAGACAAGGCAAACCCATTGGCCACCATTCTCAGTGCGGCGATGCTTCTCAAGTATGGACTTGGAGAAGAAAAGGCTGCAAAGATGATTGAAGACGCGGTCGTGGATGCTCTGAACAAAGGTTTCAGAACCGGAGACATCTACTCCCCCGGAAATAAACTGGTGGGATGCAAGGAAATGGGTGAGGAGGTTCTCAAATCAGTGGACTCCAAAGTTCCTGTTTAA

Protein Analysis

404

Amino Acids

43.85

Weight (kDa)

5.6

Isoelectric Point (pI)

42.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Iso_dh PF00180 45 - 394 1.2e-143 Isocitrate/isopropylmalate dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 842
Acc36I ACCTGC 1 cut(s) 451
AccII CGCG 1 cut(s) 1088
AciI CCGC 6 cut(s) 5, 105, 108, 255, 1028, 1088
AcoI YGGCCR 1 cut(s) 1011
AcuI CTGAAG 2 cut(s) 182, 503
AdeI CACNNNGTG 1 cut(s) 503
AfaI GTAC 1 cut(s) 353
AfiI CCNNNNNNNGG 4 cut(s) 155, 254, 392, 965
AgeI ACCGGT 1 cut(s) 115
AgsI TTSAA 4 cut(s) 773, 888, 956, 1082
AjnI CCWGG 2 cut(s) 237, 943
Alw21I GWGCWC 1 cut(s) 531
Alw26I GTCTC 4 cut(s) 376, 433, 650, 1119
AoxI GGCC 1 cut(s) 1011
ApeKI GCWGC 6 cut(s) 260, 308, 617, 800, 808, 1067
ArsI GACNNNNNNTTYG 2 cut(s) 690, 722
AsiGI ACCGGT 1 cut(s) 115
AspLEI GCGC 2 cut(s) 85, 104
AspS9I GGNCC 2 cut(s) 164, 941
AsuC2I CCSGG 3 cut(s) 45, 150, 1140
AsuHPI GGTGA 7 cut(s) 55, 105, 130, 838, 875, 944, 1184
AsuII TTCGAA 1 cut(s) 409
AvaII GGWCC 2 cut(s) 164, 941
BalI TGGCCA 1 cut(s) 1013
BanII GRGCYC 1 cut(s) 531
BauI CACGAG 2 cut(s) 623, 642
BbsI GAAGAC 1 cut(s) 1089
Bbv12I GWGCWC 1 cut(s) 531
BbvI GCAGC 6 cut(s) 272, 295, 604, 787, 820, 1054
BccI CCATC 3 cut(s) 149, 385, 925
BceAI ACGGC 1 cut(s) 70
BcgI CGANNNNNNTGC 4 cut(s) 81, 115, 782, 816
BciT130I CCWGG 2 cut(s) 239, 945
BclI TGATCA 1 cut(s) 891
BcnI CCSGG 3 cut(s) 45, 150, 1140
BcoDI GTCTC 4 cut(s) 376, 433, 650, 1119
BfaI CTAG 3 cut(s) 224, 464, 663
BfmI CTRYAG 1 cut(s) 447
BfuAI ACCTGC 1 cut(s) 451
BglII AGATCT 2 cut(s) 415, 609
Bme1390I CCNGG 5 cut(s) 45, 150, 239, 945, 1140
Bme18I GGWCC 2 cut(s) 164, 941
BmgT120I GGNCC 2 cut(s) 164, 941
BmiI GGNNCC 1 cut(s) 942
BmrFI CCNGG 5 cut(s) 45, 150, 239, 945, 1140
BpiI GAAGAC 1 cut(s) 1089
BpmI CTGGAG 2 cut(s) 53, 555
Bpu14I TTCGAA 1 cut(s) 409
BpuEI CTTGAG 1 cut(s) 1025
BpuMI CCSGG 3 cut(s) 45, 150, 1140
BsaI GGTCTC 2 cut(s) 376, 433
BsaJI CCNNGG 2 cut(s) 217, 1138
BsaWI WCCGGW 2 cut(s) 115, 1121
BsaXI ACNNNNNCTCC 2 cut(s) 1118, 1148
Bsc4I CCNNNNNNNGG 4 cut(s) 155, 254, 392, 965
Bse118I RCCGGY 1 cut(s) 115
Bse1I ACTGG 3 cut(s) 538, 901, 1155
Bse3DI GCAATG 1 cut(s) 284
BseBI CCWGG 2 cut(s) 239, 945
BseDI CCNNGG 2 cut(s) 217, 1138
BseGI GGATG 5 cut(s) 24, 718, 915, 1102, 1163
BseLI CCNNNNNNNGG 4 cut(s) 155, 254, 392, 965
BseMI GCAATG 1 cut(s) 284
BseMII CTCAG 3 cut(s) 371, 378, 1036
BseNI ACTGG 3 cut(s) 538, 901, 1155
BseRI GAGGAG 1 cut(s) 1190
BseXI GCAGC 6 cut(s) 272, 295, 604, 787, 820, 1054
Bsh1236I CGCG 1 cut(s) 1088
Bsh1285I CGRYCG 1 cut(s) 1092
BshFI GGCC 1 cut(s) 1013
BshTI ACCGGT 1 cut(s) 115
BsiEI CGRYCG 1 cut(s) 1092
BsiHKAI GWGCWC 1 cut(s) 531
BsiSI CCGG 6 cut(s) 44, 116, 150, 290, 1122, 1140
BslFI GGGAC 2 cut(s) 374, 954
BslI CCNNNNNNNGG 4 cut(s) 155, 254, 392, 965
BsmAI GTCTC 4 cut(s) 376, 433, 650, 1119
BsmFI GGGAC 2 cut(s) 374, 954
BsmI GAATGC 1 cut(s) 650
BsnI GGCC 1 cut(s) 1013
Bso31I GGTCTC 2 cut(s) 376, 433
Bsp119I TTCGAA 1 cut(s) 409
Bsp1286I GDGCHC 1 cut(s) 531
Bsp143I GATC 6 cut(s) 36, 67, 415, 570, 609, 891
BspACI CCGC 6 cut(s) 5, 105, 108, 255, 1028, 1088
BspANI GGCC 1 cut(s) 1013
BspCNI CTCAG 3 cut(s) 372, 379, 1035
BspFNI CGCG 1 cut(s) 1088
BspLI GGNNCC 1 cut(s) 942
BspMI ACCTGC 1 cut(s) 451
BspT104I TTCGAA 1 cut(s) 409
BspTNI GGTCTC 2 cut(s) 376, 433
BsrDI GCAATG 1 cut(s) 284
BsrFI RCCGGY 1 cut(s) 115
BsrI ACTGG 3 cut(s) 538, 901, 1155
BssAI RCCGGY 1 cut(s) 115
BssECI CCNNGG 2 cut(s) 217, 1138
BssMI GATC 6 cut(s) 36, 67, 415, 570, 609, 891
BssSI CACGAG 2 cut(s) 623, 642
BssT1I CCWWGG 1 cut(s) 217
Bst2BI CACGAG 2 cut(s) 623, 642
Bst2UI CCWGG 2 cut(s) 239, 945
Bst4CI ACNGT 5 cut(s) 56, 129, 318, 451, 831
Bst6I CTCTTC 1 cut(s) 406
BstBI TTCGAA 1 cut(s) 409
BstC8I GCNNGC 1 cut(s) 680
BstDEI CTNAG 4 cut(s) 186, 380, 387, 1022
BstF5I GGATG 5 cut(s) 24, 718, 915, 1102, 1163
BstFNI CGCG 1 cut(s) 1088
BstHHI GCGC 2 cut(s) 85, 104
BstKTI GATC 6 cut(s) 39, 70, 418, 573, 612, 894
BstMAI GTCTC 4 cut(s) 376, 433, 650, 1119
BstMBI GATC 6 cut(s) 36, 67, 415, 570, 609, 891
BstMCI CGRYCG 1 cut(s) 1092
BstMWI GCNNNNNNNGC 2 cut(s) 647, 679
BstNI CCWGG 2 cut(s) 239, 945
BstSCI CCNGG 5 cut(s) 43, 148, 237, 943, 1138
BstSFI CTRYAG 1 cut(s) 447
BstUI CGCG 1 cut(s) 1088
BstV1I GCAGC 6 cut(s) 272, 295, 604, 787, 820, 1054
BstV2I GAAGAC 1 cut(s) 1089
BstX2I RGATCY 2 cut(s) 415, 609
BstXI CCANNNNNNTGG 1 cut(s) 709
BstYI RGATCY 2 cut(s) 415, 609
BsuRI GGCC 1 cut(s) 1013
BtgZI GCGATG 3 cut(s) 168, 818, 1046
BtsCI GGATG 5 cut(s) 24, 718, 915, 1102, 1163
BtsI GCAGTG 1 cut(s) 303
BtsIMutI CAGTG 6 cut(s) 303, 479, 531, 894, 1030, 1197
BveI ACCTGC 1 cut(s) 451
Cac8I GCNNGC 1 cut(s) 680
CfoI GCGC 2 cut(s) 85, 104
Cfr10I RCCGGY 1 cut(s) 115
Cfr13I GGNCC 2 cut(s) 164, 941
CseI GACGC 1 cut(s) 1094
Csp6I GTAC 1 cut(s) 352
CspAI ACCGGT 1 cut(s) 115
CviAII CATG 1 cut(s) 965
CviQI GTAC 1 cut(s) 352
DdeI CTNAG 4 cut(s) 186, 380, 387, 1022
DpnI GATC 6 cut(s) 38, 69, 417, 572, 611, 893
DpnII GATC 6 cut(s) 36, 67, 415, 570, 609, 891
DraIII CACNNNGTG 1 cut(s) 503
DrdI GACNNNNNNGTC 1 cut(s) 842
DseDI GACNNNNNNGTC 1 cut(s) 842
EaeI YGGCCR 1 cut(s) 1011
Eam1104I CTCTTC 1 cut(s) 406
EarI CTCTTC 1 cut(s) 406
EciI GGCGGA 1 cut(s) 270
Ecl136II GAGCTC 1 cut(s) 529
Eco130I CCWWGG 1 cut(s) 217
Eco24I GRGCYC 1 cut(s) 531
Eco31I GGTCTC 2 cut(s) 376, 433
Eco47I GGWCC 2 cut(s) 164, 941
Eco53kI GAGCTC 1 cut(s) 529
Eco57I CTGAAG 2 cut(s) 182, 503
EcoICRI GAGCTC 1 cut(s) 529
EcoO109I RGGNCCY 1 cut(s) 941
EcoRII CCWGG 2 cut(s) 237, 943
EcoT14I CCWWGG 1 cut(s) 217
EcoT22I ATGCAT 1 cut(s) 718
EcoT38I GRGCYC 1 cut(s) 531
ErhI CCWWGG 1 cut(s) 217
FaeI CATG 1 cut(s) 968
FaqI GGGAC 2 cut(s) 374, 954
FatI CATG 1 cut(s) 964
FauNDI CATATG 1 cut(s) 783
FbaI TGATCA 1 cut(s) 891
FokI GGATG 5 cut(s) 11, 725, 922, 1109, 1170
FriOI GRGCYC 1 cut(s) 531
FspBI CTAG 3 cut(s) 224, 464, 663
GlaI GCGC 2 cut(s) 84, 103
GsuI CTGGAG 2 cut(s) 53, 555
HaeIII GGCC 1 cut(s) 1013
HapII CCGG 6 cut(s) 44, 116, 150, 290, 1122, 1140
HgaI GACGC 1 cut(s) 1094
HhaI GCGC 2 cut(s) 85, 104
Hin1II CATG 1 cut(s) 968
Hin6I GCGC 2 cut(s) 83, 102
HinP1I GCGC 2 cut(s) 83, 102
HincII GTYRAC 1 cut(s) 694
HindII GTYRAC 1 cut(s) 694
HindIII AAGCTT 1 cut(s) 882
HinfI GANTC 3 cut(s) 935, 948, 1196
HpaII CCGG 6 cut(s) 44, 116, 150, 290, 1122, 1140
HphI GGTGA 7 cut(s) 55, 105, 130, 838, 875, 944, 1184
Hpy166II GTNNAC 2 cut(s) 694, 1195
Hpy188I TCNGA 9 cut(s) 201, 278, 322, 347, 381, 757, 877, 1104, 1118
Hpy188III TCNNGA 6 cut(s) 32, 167, 623, 655, 764, 939
Hpy8I GTNNAC 2 cut(s) 694, 1195
HpyCH4III ACNGT 5 cut(s) 56, 129, 318, 451, 831
HpyCH4V TGCA 7 cut(s) 16, 650, 716, 808, 923, 1070, 1161
HpyF10VI GCNNNNNNNGC 2 cut(s) 647, 679
HpyF3I CTNAG 4 cut(s) 186, 380, 387, 1022
Hsp92II CATG 1 cut(s) 968
HspAI GCGC 2 cut(s) 83, 102
Ksp22I TGATCA 1 cut(s) 891
Kzo9I GATC 6 cut(s) 36, 67, 415, 570, 609, 891
LmnI GCTCC 3 cut(s) 257, 338, 526
Lsp1109I GCAGC 6 cut(s) 272, 295, 604, 787, 820, 1054
MaeI CTAG 3 cut(s) 224, 464, 663
MaeIII GTNAC 3 cut(s) 739, 818, 844
MalI GATC 6 cut(s) 38, 69, 417, 572, 611, 893
MboI GATC 6 cut(s) 36, 67, 415, 570, 609, 891
MboII GAAGA 7 cut(s) 60, 323, 423, 496, 599, 1070, 1094
MflI RGATCY 2 cut(s) 415, 609
MhlI GDGCHC 1 cut(s) 531
MlsI TGGCCA 1 cut(s) 1013
MluCI AATT 3 cut(s) 93, 433, 636
MluNI TGGCCA 1 cut(s) 1013
MlyI GAGTC 2 cut(s) 942, 1190
MmeI TCCRAC 1 cut(s) 256
MnlI CCTC 8 cut(s) 286, 341, 530, 554, 723, 763, 1168, 1171
Mox20I TGGCCA 1 cut(s) 1013
Mph1103I ATGCAT 1 cut(s) 718
MscI TGGCCA 1 cut(s) 1013
MseI TTAA 3 cut(s) 402, 600, 1213
MslI CAYNNNNRTG 2 cut(s) 786, 908
Msp20I TGGCCA 1 cut(s) 1013
MspI CCGG 6 cut(s) 44, 116, 150, 290, 1122, 1140
MspR9I CCNGG 5 cut(s) 45, 150, 239, 945, 1140
Mva1269I GAATGC 1 cut(s) 650
MvaI CCWGG 2 cut(s) 239, 945
MvnI CGCG 1 cut(s) 1088
MwoI GCNNNNNNNGC 2 cut(s) 647, 679
NciI CCSGG 3 cut(s) 45, 150, 1140
NdeI CATATG 1 cut(s) 783
NdeII GATC 6 cut(s) 36, 67, 415, 570, 609, 891
NlaIII CATG 1 cut(s) 968
NlaIV GGNNCC 1 cut(s) 942
NmuCI GTSAC 2 cut(s) 818, 844
NsiI ATGCAT 1 cut(s) 718
NspV TTCGAA 1 cut(s) 409
PcsI WCGNNNNNNNCGW 2 cut(s) 582, 621
PctI GAATGC 1 cut(s) 650
PfeI GAWTC 1 cut(s) 935
PflFI GACNNNGTC 1 cut(s) 1088
PfoI TCCNGGA 1 cut(s) 237
PinAI ACCGGT 1 cut(s) 115
PleI GAGTC 2 cut(s) 942, 1190
PpsI GAGTC 2 cut(s) 942, 1190
PpuMI RGGWCCY 1 cut(s) 941
Psp124BI GAGCTC 1 cut(s) 531
Psp5II RGGWCCY 1 cut(s) 941
Psp6I CCWGG 2 cut(s) 237, 943
PspGI CCWGG 2 cut(s) 237, 943
PspN4I GGNNCC 1 cut(s) 942
PspPI GGNCC 2 cut(s) 164, 941
PspPPI RGGWCCY 1 cut(s) 941
PsuI RGATCY 2 cut(s) 415, 609
PsyI GACNNNGTC 1 cut(s) 1088
RsaI GTAC 1 cut(s) 353
RsaNI GTAC 1 cut(s) 352
RseI CAYNNNNRTG 2 cut(s) 786, 908
SacI GAGCTC 1 cut(s) 531
SaqAI TTAA 3 cut(s) 402, 600, 1213
Sau3AI GATC 6 cut(s) 36, 67, 415, 570, 609, 891
Sau96I GGNCC 2 cut(s) 164, 941
SchI GAGTC 2 cut(s) 942, 1190
ScrFI CCNGG 5 cut(s) 45, 150, 239, 945, 1140
SduI GDGCHC 1 cut(s) 531
SfcI CTRYAG 1 cut(s) 447
SfuI TTCGAA 1 cut(s) 409
SgrAI CRCCGGYG 1 cut(s) 115
SinI GGWCC 2 cut(s) 164, 941
SmiMI CAYNNNNRTG 2 cut(s) 786, 908
SmlI CTYRAG 1 cut(s) 1040
SmoI CTYRAG 1 cut(s) 1040
Sse9I AATT 3 cut(s) 93, 433, 636
SsiI CCGC 6 cut(s) 5, 105, 108, 255, 1028, 1088
SspI AATATT 1 cut(s) 723
SspMI CTAG 3 cut(s) 224, 464, 663
SstI GAGCTC 1 cut(s) 531
StyD4I CCNGG 5 cut(s) 43, 148, 237, 943, 1138
StyI CCWWGG 1 cut(s) 217
TaaI ACNGT 5 cut(s) 56, 129, 318, 451, 831
TaqI TCGA 4 cut(s) 91, 409, 654, 792
TaqII GACCGA 1 cut(s) 152
TasI AATT 3 cut(s) 93, 433, 636
TauI GCSGC 4 cut(s) 8, 107, 110, 1031
TfiI GAWTC 1 cut(s) 935
Tru1I TTAA 3 cut(s) 402, 600, 1213
Tru9I TTAA 3 cut(s) 402, 600, 1213
TscAI CASTG 6 cut(s) 310, 486, 538, 901, 1030, 1197
TseFI GTSAC 2 cut(s) 818, 844
TseI GCWGC 6 cut(s) 260, 308, 617, 800, 808, 1067
Tsp45I GTSAC 2 cut(s) 818, 844
TspDTI ATGAA 1 cut(s) 894
TspGWI ACGGA 2 cut(s) 17, 806
TspRI CASTG 6 cut(s) 310, 486, 538, 901, 1030, 1197
Tth111I GACNNNGTC 1 cut(s) 1088
VpaK11BI GGWCC 2 cut(s) 164, 941
XspI CTAG 3 cut(s) 224, 464, 663
Zsp2I ATGCAT 1 cut(s) 718
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.