Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0006646

Physical Location & Seq

Genomic Coordinates Forward (+)

20715232 .. 20716326

Gene Structure 1095 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g22270.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGATCACTGGAAGTATTGGGATGCTGCCATCTGCTAGTCTTGGGGAATCGGGTCCTGGACTTTATGAACCCATACATGGTTCTGCTCCTGATATTGCTGGACAGGATAAAGCAAACCCATTAGCGACAGTTCTCAGTGCTGCTATGCTTTTGAAGTACGGTTCAGGTGAAGAAAAGGCTGCCAAGAGAATTGAGGATGCAGTTCTAGATACTTTGAATGGGGGGTTTCGGACTGGTGACATATATTCCACTGGAACTAAATTGGTAGGATGCAAAGAAATGGGTGAAGAGGTATTGAAGTCTGTTGATTCCCAAGTTCCGTCTCCAGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006790 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009651 GO:0009941 GO:0009987 GO:0016143 GO:0016144 GO:0019748 GO:0019757 GO:0019758 GO:0019760 GO:0019761 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044249 GO:0044272 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0050896 GO:0071704 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00290 ko00660 ko00966 ko01100 ko01110 ko01210 ko01230 map00290 map00660 map00966 map01100 map01110 map01210 map01230

Pfam Domains

Protein Families

Iso_dh

Protein Analysis

111

Amino Acids

11.27

Weight (kDa)

4.7

Isoelectric Point (pI)

32.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006646)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31180 AT1G31180 AT1G80560 AT5G14200 AT5G14200
fragaria_vesca	FvH4_2g04971
malus_domestica	MD17G1218700.v1.1
prunus_persica	Prupe.3G094300_v2.0.a1 Prupe.3G094300_v2.0.a1
pyrus_communis	pycom17g22270 pycom17g22330
rosa_chinensis	RchiOBHm_Chr2g0133781 RchiOBHm_Chr2g0133821
rosa_laevigata	RLG00000019364
rosa_multiflora	Rmu_sc0001782.1_g000049 Rmu_sc0001782.1_g000053 Rmu_sc0003682.1_g000003 Rmu_sc0004983.1_g000001
rosa_roxburghii	Rroxscaffold_2G00110790 Rroxscaffold_2G00110820
rosa_rugosa	Rorug02G0313900
rosa_samantha	Rh2AG367200 Rh2CG350300 Rh2CG350600 Rh2DG389700
rosa_wichuraiana	Rw2G029860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	158
AfiI	CCNNNNNNNGG	1 cut(s)	77
AgsI	TTSAA	3 cut(s)	154, 217, 298
AjnI	CCWGG	1 cut(s)	55
Alw26I	GTCTC	1 cut(s)	327
ApeKI	GCWGC	3 cut(s)	25, 140, 179
AspS9I	GGNCC	1 cut(s)	53
AsuHPI	GGTGA	3 cut(s)	179, 248, 296
AvaII	GGWCC	1 cut(s)	53
BbvI	GCAGC	3 cut(s)	12, 127, 166
BccI	CCATC	1 cut(s)	37
BciT130I	CCWGG	1 cut(s)	57
BclI	TGATCA	1 cut(s)	3
BcoDI	GTCTC	1 cut(s)	327
BfaI	CTAG	2 cut(s)	36, 206
BisI	GCNGC	3 cut(s)	26, 141, 180
BlsI	GCNGC	3 cut(s)	27, 142, 181
Bme1390I	CCNGG	1 cut(s)	57
Bme18I	GGWCC	1 cut(s)	53
BmgT120I	GGNCC	1 cut(s)	53
BmiI	GGNNCC	1 cut(s)	54
BmrFI	CCNGG	1 cut(s)	57
BmsI	GCATC	3 cut(s)	12, 187, 260
BpmI	CTGGAG	1 cut(s)	309
Bsc4I	CCNNNNNNNGG	1 cut(s)	77
Bse1I	ACTGG	4 cut(s)	13, 238, 256, 326
BseBI	CCWGG	1 cut(s)	57
BseGI	GGATG	3 cut(s)	27, 202, 275
BseLI	CCNNNNNNNGG	1 cut(s)	77
BseMII	CTCAG	1 cut(s)	148
BseNI	ACTGG	4 cut(s)	13, 238, 256, 326
BseXI	GCAGC	3 cut(s)	12, 127, 166
BslI	CCNNNNNNNGG	1 cut(s)	77
BsmAI	GTCTC	1 cut(s)	327
BsmBI	CGTCTC	1 cut(s)	327
Bsp143I	GATC	1 cut(s)	3
BspCNI	CTCAG	1 cut(s)	147
BspLI	GGNNCC	1 cut(s)	54
BsrI	ACTGG	4 cut(s)	13, 238, 256, 326
BssMI	GATC	1 cut(s)	3
Bst2UI	CCWGG	1 cut(s)	57
Bst4CI	ACNGT	2 cut(s)	130, 161
Bst6I	CTCTTC	1 cut(s)	282
BstDEI	CTNAG	1 cut(s)	134
BstF5I	GGATG	3 cut(s)	27, 202, 275
BstKTI	GATC	1 cut(s)	6
BstMAI	GTCTC	1 cut(s)	327
BstMBI	GATC	1 cut(s)	3
BstNI	CCWGG	1 cut(s)	57
BstSCI	CCNGG	1 cut(s)	55
BstV1I	GCAGC	3 cut(s)	12, 127, 166
BtsCI	GGATG	3 cut(s)	27, 202, 275
BtsIMutI	CAGTG	3 cut(s)	6, 142, 249
Cfr13I	GGNCC	1 cut(s)	53
Csp6I	GTAC	1 cut(s)	157
CviAII	CATG	1 cut(s)	77
CviJI	RGCY	1 cut(s)	179
CviKI_1	RGCY	1 cut(s)	179
CviQI	GTAC	1 cut(s)	157
DdeI	CTNAG	1 cut(s)	134
DpnI	GATC	1 cut(s)	5
DpnII	GATC	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	282
EarI	CTCTTC	1 cut(s)	282
Eco47I	GGWCC	1 cut(s)	53
EcoO109I	RGGNCCY	1 cut(s)	53
EcoRII	CCWGG	1 cut(s)	55
Esp3I	CGTCTC	1 cut(s)	327
FaeI	CATG	1 cut(s)	80
FaiI	YATR	7 cut(s)	66, 74, 78, 146, 242, 244, 331
FatI	CATG	1 cut(s)	76
FbaI	TGATCA	1 cut(s)	3
Fnu4HI	GCNGC	3 cut(s)	26, 141, 180
FokI	GGATG	3 cut(s)	34, 209, 282
Fsp4HI	GCNGC	3 cut(s)	26, 141, 180
FspBI	CTAG	2 cut(s)	36, 206
GluI	GCNGC	3 cut(s)	26, 141, 180
GsuI	CTGGAG	1 cut(s)	309
Hin1II	CATG	1 cut(s)	80
HinfI	GANTC	2 cut(s)	47, 308
HphI	GGTGA	3 cut(s)	179, 248, 296
Hpy188I	TCNGA	1 cut(s)	231
Hpy188III	TCNNGA	2 cut(s)	89, 206
HpyCH4III	ACNGT	2 cut(s)	130, 161
HpyCH4V	TGCA	2 cut(s)	200, 273
HpyF3I	CTNAG	1 cut(s)	134
Hsp92II	CATG	1 cut(s)	80
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	1 cut(s)	3
LmnI	GCTCC	1 cut(s)	91
LpnPI	CCDG	8 cut(s)	42, 69, 84, 89, 102, 150, 219, 237
Lsp1109I	GCAGC	3 cut(s)	12, 127, 166
LweI	GCATC	3 cut(s)	12, 187, 260
MaeI	CTAG	2 cut(s)	36, 206
MaeIII	GTNAC	1 cut(s)	236
MalI	GATC	1 cut(s)	5
MboI	GATC	1 cut(s)	3
MboII	GAAGA	2 cut(s)	182, 299
MluCI	AATT	2 cut(s)	189, 260
MnlI	CCTC	2 cut(s)	187, 283
MspR9I	CCNGG	1 cut(s)	57
MvaI	CCWGG	1 cut(s)	57
NdeII	GATC	1 cut(s)	3
NlaIII	CATG	1 cut(s)	80
NlaIV	GGNNCC	1 cut(s)	54
NmuCI	GTSAC	1 cut(s)	236
PfeI	GAWTC	2 cut(s)	47, 308
PfoI	TCCNGGA	1 cut(s)	55
PkrI	GCNGC	3 cut(s)	27, 142, 181
PpuMI	RGGWCCY	1 cut(s)	53
Psp5II	RGGWCCY	1 cut(s)	53
Psp6I	CCWGG	1 cut(s)	55
PspGI	CCWGG	1 cut(s)	55
PspN4I	GGNNCC	1 cut(s)	54
PspPI	GGNCC	1 cut(s)	53
PspPPI	RGGWCCY	1 cut(s)	53
RsaI	GTAC	1 cut(s)	158
RsaNI	GTAC	1 cut(s)	157
SatI	GCNGC	3 cut(s)	26, 141, 180
Sau3AI	GATC	1 cut(s)	3
Sau96I	GGNCC	1 cut(s)	53
ScrFI	CCNGG	1 cut(s)	57
SetI	ASST	2 cut(s)	169, 294
SfaNI	GCATC	3 cut(s)	12, 187, 260
SinI	GGWCC	1 cut(s)	53
Sse9I	AATT	2 cut(s)	189, 260
SspMI	CTAG	2 cut(s)	36, 206
StyD4I	CCNGG	1 cut(s)	55
TaaI	ACNGT	2 cut(s)	130, 161
TasI	AATT	2 cut(s)	189, 260
TfiI	GAWTC	2 cut(s)	47, 308
TscAI	CASTG	3 cut(s)	13, 142, 256
TseFI	GTSAC	1 cut(s)	236
TseI	GCWGC	3 cut(s)	25, 140, 179
Tsp45I	GTSAC	1 cut(s)	236
TspDTI	ATGAA	1 cut(s)	81
TspGWI	ACGGA	1 cut(s)	309
TspRI	CASTG	3 cut(s)	13, 142, 256
VpaK11BI	GGWCC	1 cut(s)	53
XbaI	TCTAGA	1 cut(s)	205
XspI	CTAG	2 cut(s)	36, 206

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.