Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001782.1

Orthogroup ID

OG0006646

Physical Location & Seq

Genomic Coordinates Forward (+)

249261 .. 254025

Gene Structure 4765 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001782.1_g000053.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

atgattaccggaagtattgggatgcttccatctgctagtcttggagaatcaggtcttggactttttgaacctatacatggttctggtcttgatattgctggacaggataaggcaaacccattagcaacggttctcagtgctgctatgcttttgaagtacggtcttggagaagaaaatgctgccaagagaattgaggcagcagtccttgatactttgaaccggggccttcaaatcccagaaaccaccgctgcccaccttgaagatctcaactctaggagtccagaaccggcggacccgcccccagaaccggccggaaaatatccgaaccggccaccggaaatatctatatcctccctgcccggttcgaagccttcctccctgcctactgctaccaaacttcaccggaagctgcaaccagaccccagatcaccggagccgaaaaatctccaccggaaccggcctaaattcaactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006790 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009651 GO:0009941 GO:0009987 GO:0016143 GO:0016144 GO:0019748 GO:0019757 GO:0019758 GO:0019760 GO:0019761 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044249 GO:0044272 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0050896 GO:0071704 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00290 ko00660 ko00966 ko01100 ko01110 ko01210 ko01230 map00290 map00660 map00966 map01100 map01110 map01210 map01230

Pfam Domains

Protein Families

Iso_dh

Protein Analysis

157

Amino Acids

16.62

Weight (kDa)

6.92

Isoelectric Point (pI)

59.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006646)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31180 AT1G31180 AT1G80560 AT5G14200 AT5G14200
fragaria_vesca	FvH4_2g04971
malus_domestica	MD17G1218700.v1.1
prunus_persica	Prupe.3G094300_v2.0.a1 Prupe.3G094300_v2.0.a1
pyrus_communis	pycom17g22270 pycom17g22330
rosa_chinensis	RchiOBHm_Chr2g0133781 RchiOBHm_Chr2g0133821
rosa_laevigata	RLG00000019364
rosa_multiflora	Rmu_sc0001782.1_g000049 Rmu_sc0001782.1_g000053 Rmu_sc0003682.1_g000003 Rmu_sc0004983.1_g000001
rosa_roxburghii	Rroxscaffold_2G00110790 Rroxscaffold_2G00110820
rosa_rugosa	Rorug02G0313900
rosa_samantha	Rh2AG367200 Rh2CG350300 Rh2CG350600 Rh2DG389700
rosa_wichuraiana	Rw2G029860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	246, 290, 296
AcoI	YGGCCR	2 cut(s)	309, 329
AcsI	RAATTY	1 cut(s)	464
AfaI	GTAC	1 cut(s)	158
AfiI	CCNNNNNNNGG	3 cut(s)	77, 307, 334
AgsI	TTSAA	6 cut(s)	68, 154, 217, 230, 260, 469
AjuI	GAANNNNNNNTTGG	2 cut(s)	39, 71
AluBI	AGCT	1 cut(s)	409
AluI	AGCT	1 cut(s)	409
AoxI	GGCC	4 cut(s)	223, 309, 329, 458
ApeKI	GCWGC	5 cut(s)	140, 179, 197, 248, 409
ApoI	RAATTY	1 cut(s)	464
AspS9I	GGNCC	2 cut(s)	223, 292
AsuC2I	CCSGG	2 cut(s)	221, 360
AsuHPI	GGTGA	2 cut(s)	392, 420
AsuII	TTCGAA	1 cut(s)	365
AvaII	GGWCC	1 cut(s)	292
BbvI	GCAGC	5 cut(s)	127, 166, 209, 235, 396
BccI	CCATC	1 cut(s)	37
BcnI	CCSGG	2 cut(s)	221, 360
BfaI	CTAG	2 cut(s)	36, 273
BglII	AGATCT	1 cut(s)	262
BisI	GCNGC	5 cut(s)	141, 180, 198, 249, 410
BlsI	GCNGC	5 cut(s)	142, 181, 199, 250, 411
Bme1390I	CCNGG	2 cut(s)	221, 360
Bme18I	GGWCC	1 cut(s)	292
BmgT120I	GGNCC	2 cut(s)	223, 292
BmiI	GGNNCC	4 cut(s)	224, 294, 435, 455
BmrFI	CCNGG	2 cut(s)	221, 360
BmsI	GCATC	1 cut(s)	12
Bpu14I	TTCGAA	1 cut(s)	365
BpuMI	CCSGG	2 cut(s)	221, 360
BsaJI	CCNNGG	1 cut(s)	220
BsaWI	WCCGGW	5 cut(s)	8, 334, 402, 430, 450
Bsc4I	CCNNNNNNNGG	3 cut(s)	77, 307, 334
Bse118I	RCCGGY	4 cut(s)	286, 307, 327, 456
BseDI	CCNNGG	1 cut(s)	220
BseGI	GGATG	1 cut(s)	27
BseLI	CCNNNNNNNGG	3 cut(s)	77, 307, 334
BseMII	CTCAG	1 cut(s)	148
BseX3I	CGGCCG	1 cut(s)	309
BseXI	GCAGC	5 cut(s)	127, 166, 209, 235, 396
Bsh1285I	CGRYCG	1 cut(s)	312
BshFI	GGCC	4 cut(s)	225, 311, 331, 460
BsiEI	CGRYCG	1 cut(s)	312
BslI	CCNNNNNNNGG	3 cut(s)	77, 307, 334
BsnI	GGCC	4 cut(s)	225, 311, 331, 460
Bsp119I	TTCGAA	1 cut(s)	365
Bsp143I	GATC	2 cut(s)	262, 425
BspACI	CCGC	3 cut(s)	246, 290, 296
BspANI	GGCC	4 cut(s)	225, 311, 331, 460
BspCNI	CTCAG	1 cut(s)	147
BspLI	GGNNCC	4 cut(s)	224, 294, 435, 455
BspT104I	TTCGAA	1 cut(s)	365
BsrFI	RCCGGY	4 cut(s)	286, 307, 327, 456
BssAI	RCCGGY	4 cut(s)	286, 307, 327, 456
BssECI	CCNNGG	1 cut(s)	220
BssMI	GATC	2 cut(s)	262, 425
Bst4CI	ACNGT	2 cut(s)	130, 161
BstBI	TTCGAA	1 cut(s)	365
BstDEI	CTNAG	1 cut(s)	134
BstF5I	GGATG	1 cut(s)	27
BstKTI	GATC	2 cut(s)	265, 428
BstMBI	GATC	2 cut(s)	262, 425
BstMCI	CGRYCG	1 cut(s)	312
BstSCI	CCNGG	2 cut(s)	219, 358
BstV1I	GCAGC	5 cut(s)	127, 166, 209, 235, 396
BstX2I	RGATCY	1 cut(s)	262
BstYI	RGATCY	1 cut(s)	262
BstZI	CGGCCG	1 cut(s)	309
BsuRI	GGCC	4 cut(s)	225, 311, 331, 460
BtsCI	GGATG	1 cut(s)	27
BtsIMutI	CAGTG	1 cut(s)	142
Cfr10I	RCCGGY	4 cut(s)	286, 307, 327, 456
Cfr13I	GGNCC	2 cut(s)	223, 292
Csp6I	GTAC	1 cut(s)	157
CviAII	CATG	1 cut(s)	77
CviJI	RGCY	7 cut(s)	225, 311, 331, 370, 409, 436, 460
CviKI_1	RGCY	7 cut(s)	225, 311, 331, 370, 409, 436, 460
CviQI	GTAC	1 cut(s)	157
DdeI	CTNAG	1 cut(s)	134
DpnI	GATC	2 cut(s)	264, 427
DpnII	GATC	2 cut(s)	262, 425
EaeI	YGGCCR	2 cut(s)	309, 329
EagI	CGGCCG	1 cut(s)	309
EciI	GGCGGA	1 cut(s)	305
EclXI	CGGCCG	1 cut(s)	309
Eco47I	GGWCC	1 cut(s)	292
Eco52I	CGGCCG	1 cut(s)	309
EcoO109I	RGGNCCY	1 cut(s)	223
FaeI	CATG	1 cut(s)	80
FaiI	YATR	4 cut(s)	74, 78, 146, 347
FatI	CATG	1 cut(s)	76
FauI	CCCGC	1 cut(s)	303
Fnu4HI	GCNGC	5 cut(s)	141, 180, 198, 249, 410
FokI	GGATG	1 cut(s)	34
Fsp4HI	GCNGC	5 cut(s)	141, 180, 198, 249, 410
FspBI	CTAG	2 cut(s)	36, 273
GluI	GCNGC	5 cut(s)	141, 180, 198, 249, 410
HaeIII	GGCC	4 cut(s)	225, 311, 331, 460
Hin1II	CATG	1 cut(s)	80
HinfI	GANTC	2 cut(s)	47, 277
HphI	GGTGA	2 cut(s)	392, 420
Hpy188I	TCNGA	1 cut(s)	324
Hpy188III	TCNNGA	2 cut(s)	89, 281
HpyAV	CCTTC	2 cut(s)	236, 381
HpyCH4III	ACNGT	2 cut(s)	130, 161
HpyCH4V	TGCA	1 cut(s)	412
HpyF3I	CTNAG	1 cut(s)	134
Hsp92II	CATG	1 cut(s)	80
Kzo9I	GATC	2 cut(s)	262, 425
LmnI	GCTCC	1 cut(s)	433
Lsp1109I	GCAGC	5 cut(s)	127, 166, 209, 235, 396
LweI	GCATC	1 cut(s)	12
MaeI	CTAG	2 cut(s)	36, 273
MalI	GATC	2 cut(s)	264, 427
MboI	GATC	2 cut(s)	262, 425
MboII	GAAGA	2 cut(s)	182, 272
MflI	RGATCY	1 cut(s)	262
MluCI	AATT	2 cut(s)	189, 464
MlyI	GAGTC	1 cut(s)	286
MnlI	CCTC	3 cut(s)	187, 361, 385
MspA1I	CMGCKG	1 cut(s)	248
MspR9I	CCNGG	2 cut(s)	221, 360
NciI	CCSGG	2 cut(s)	221, 360
NdeII	GATC	2 cut(s)	262, 425
NlaIII	CATG	1 cut(s)	80
NlaIV	GGNNCC	4 cut(s)	224, 294, 435, 455
NspV	TTCGAA	1 cut(s)	365
PfeI	GAWTC	1 cut(s)	47
PkrI	GCNGC	5 cut(s)	142, 181, 199, 250, 411
PleI	GAGTC	1 cut(s)	285
PpsI	GAGTC	1 cut(s)	285
PspN4I	GGNNCC	4 cut(s)	224, 294, 435, 455
PspPI	GGNCC	2 cut(s)	223, 292
PsuI	RGATCY	1 cut(s)	262
RsaI	GTAC	1 cut(s)	158
RsaNI	GTAC	1 cut(s)	157
SatI	GCNGC	5 cut(s)	141, 180, 198, 249, 410
Sau3AI	GATC	2 cut(s)	262, 425
Sau96I	GGNCC	2 cut(s)	223, 292
SchI	GAGTC	1 cut(s)	286
ScrFI	CCNGG	2 cut(s)	221, 360
SetI	ASST	4 cut(s)	55, 73, 258, 411
SfaNI	GCATC	1 cut(s)	12
SfuI	TTCGAA	1 cut(s)	365
SinI	GGWCC	1 cut(s)	292
Sse9I	AATT	2 cut(s)	189, 464
SsiI	CCGC	3 cut(s)	246, 290, 296
SspMI	CTAG	2 cut(s)	36, 273
StyD4I	CCNGG	2 cut(s)	219, 358
TaaI	ACNGT	2 cut(s)	130, 161
TaqI	TCGA	1 cut(s)	365
TasI	AATT	2 cut(s)	189, 464
TfiI	GAWTC	1 cut(s)	47
TscAI	CASTG	1 cut(s)	142
TseI	GCWGC	5 cut(s)	140, 179, 197, 248, 409
TspRI	CASTG	1 cut(s)	142
VpaK11BI	GGWCC	1 cut(s)	292
XapI	RAATTY	1 cut(s)	464
XspI	CTAG	2 cut(s)	36, 273

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.