Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0006646

Physical Location & Seq

Genomic Coordinates Forward (+)

35301654 .. 35317977

Gene Structure 16324 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00110820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGTTCAGCTGTGGCTCTATCCACAGACCTTCCAGATCTTCTCCATATTCTCACCACCGCCTTCTTACAGTTACAAACAAACTCAGCTCCAAACCCAAAAGATGTGTACAGCGAGAGTTGGCTAAAGTTTTGAAAAAAAAATATTGGATGACCAAGATACAGATCTTTGATGATGTTATGATTTATTCAATTCACCAAACCATCCAAAGGAAAATCATCACACATAACACAAGATCTGTTAACGCAGTAAAACCCTCCAAAGAGGATAAGGCAAACCCATTAGCAACGGTTCTCAGTGCTGCTATGCTTTTGAAGTACGGTCTTGGAGAAGAAAATGCTGCCAAGAGAATTGAGGCAGCAGTCCTTGATACTTTGAACCGGGGGTTTCGAACAGTTGATATCTATTTGTCCGGAACGGATTCACAAGCAAGATCGAGGAAATCAAATTCATACCTTAAATCCTTTGCTGCAAATCCAATTTCAACTCTCCAAGTGAGGAAATCTCTTGCTCCAAGTGCGAAAAAAGCCTCCTTTAGAGCCAAATCCTTGAGAAAACTCATGGGCTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006790 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009651 GO:0009941 GO:0009987 GO:0016143 GO:0016144 GO:0019748 GO:0019757 GO:0019758 GO:0019760 GO:0019761 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044249 GO:0044272 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0050896 GO:0071704 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00290 ko00660 ko00966 ko01100 ko01110 ko01210 ko01230 map00290 map00660 map00966 map01100 map01110 map01210 map01230

Pfam Domains

Protein Families

Iso_dh

Protein Analysis

189

Amino Acids

21.22

Weight (kDa)

10.59

Isoelectric Point (pI)

37.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Iso_dh	PF00180	86 - 139	1.2e-13	Isocitrate/isopropylmalate dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006646)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31180 AT1G31180 AT1G80560 AT5G14200 AT5G14200
fragaria_vesca	FvH4_2g04971
malus_domestica	MD17G1218700.v1.1
prunus_persica	Prupe.3G094300_v2.0.a1 Prupe.3G094300_v2.0.a1
pyrus_communis	pycom17g22270 pycom17g22330
rosa_chinensis	RchiOBHm_Chr2g0133781 RchiOBHm_Chr2g0133821
rosa_laevigata	RLG00000019364
rosa_multiflora	Rmu_sc0001782.1_g000049 Rmu_sc0001782.1_g000053 Rmu_sc0003682.1_g000003 Rmu_sc0004983.1_g000001
rosa_roxburghii	Rroxscaffold_2G00110790 Rroxscaffold_2G00110820
rosa_rugosa	Rorug02G0313900
rosa_samantha	Rh2AG367200 Rh2CG350300 Rh2CG350600 Rh2DG389700
rosa_wichuraiana	Rw2G029860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	410
AciI	CCGC	1 cut(s)	58
AcsI	RAATTY	1 cut(s)	445
AfaI	GTAC	2 cut(s)	108, 317
AfiI	CCNNNNNNNGG	1 cut(s)	207
AgsI	TTSAA	5 cut(s)	133, 189, 313, 376, 483
AluBI	AGCT	2 cut(s)	9, 87
AluI	AGCT	2 cut(s)	9, 87
Aor13HI	TCCGGA	1 cut(s)	410
ApeKI	GCWGC	4 cut(s)	299, 338, 356, 467
ApoI	RAATTY	1 cut(s)	445
Asp700I	GAANNNNTTC	1 cut(s)	418
AsuC2I	CCSGG	1 cut(s)	380
AsuHPI	GGTGA	2 cut(s)	44, 185
AsuII	TTCGAA	1 cut(s)	388
BanII	GRGCYC	1 cut(s)	566
BbvI	GCAGC	4 cut(s)	286, 325, 368, 454
BccI	CCATC	1 cut(s)	209
BcnI	CCSGG	1 cut(s)	380
BglII	AGATCT	3 cut(s)	35, 162, 233
BisI	GCNGC	4 cut(s)	300, 339, 357, 468
BlsI	GCNGC	4 cut(s)	301, 340, 358, 469
Bme1390I	CCNGG	1 cut(s)	380
BmrFI	CCNGG	1 cut(s)	380
BplI	GAGNNNNNCTC	2 cut(s)	487, 519
Bpu14I	TTCGAA	1 cut(s)	388
BpuEI	CTTGAG	1 cut(s)	568
BpuMI	CCSGG	1 cut(s)	380
BsaBI	GATNNNNATC	1 cut(s)	161
BsaJI	CCNNGG	1 cut(s)	379
BsaWI	WCCGGW	1 cut(s)	410
Bsc4I	CCNNNNNNNGG	1 cut(s)	207
Bse8I	GATNNNNATC	1 cut(s)	161
BseAI	TCCGGA	1 cut(s)	410
BseDI	CCNNGG	1 cut(s)	379
BseGI	GGATG	2 cut(s)	153, 201
BseJI	GATNNNNATC	1 cut(s)	161
BseLI	CCNNNNNNNGG	1 cut(s)	207
BseMII	CTCAG	2 cut(s)	97, 307
BseXI	GCAGC	4 cut(s)	286, 325, 368, 454
BsiSI	CCGG	2 cut(s)	379, 411
BslI	CCNNNNNNNGG	1 cut(s)	207
Bsp119I	TTCGAA	1 cut(s)	388
Bsp1286I	GDGCHC	1 cut(s)	566
Bsp13I	TCCGGA	1 cut(s)	410
Bsp1407I	TGTACA	1 cut(s)	106
Bsp143I	GATC	4 cut(s)	35, 162, 233, 431
BspACI	CCGC	1 cut(s)	58
BspCNI	CTCAG	2 cut(s)	96, 306
BspEI	TCCGGA	1 cut(s)	410
BspT104I	TTCGAA	1 cut(s)	388
BsrGI	TGTACA	1 cut(s)	106
BssECI	CCNNGG	1 cut(s)	379
BssMI	GATC	4 cut(s)	35, 162, 233, 431
Bst4CI	ACNGT	4 cut(s)	70, 289, 320, 394
BstAUI	TGTACA	1 cut(s)	106
BstBI	TTCGAA	1 cut(s)	388
BstDEI	CTNAG	2 cut(s)	83, 293
BstF5I	GGATG	2 cut(s)	153, 201
BstKTI	GATC	4 cut(s)	38, 165, 236, 434
BstMBI	GATC	4 cut(s)	35, 162, 233, 431
BstMWI	GCNNNNNNNGC	2 cut(s)	515, 524
BstSCI	CCNGG	1 cut(s)	378
BstV1I	GCAGC	4 cut(s)	286, 325, 368, 454
BstX2I	RGATCY	3 cut(s)	35, 162, 233
BstYI	RGATCY	3 cut(s)	35, 162, 233
BtsCI	GGATG	2 cut(s)	153, 201
BtsIMutI	CAGTG	1 cut(s)	301
Csp6I	GTAC	2 cut(s)	107, 316
CviAII	CATG	1 cut(s)	559
CviJI	RGCY	7 cut(s)	9, 15, 87, 122, 527, 539, 564
CviKI_1	RGCY	7 cut(s)	9, 15, 87, 122, 527, 539, 564
CviQI	GTAC	2 cut(s)	107, 316
DdeI	CTNAG	2 cut(s)	83, 293
DpnI	GATC	4 cut(s)	37, 164, 235, 433
DpnII	GATC	4 cut(s)	35, 162, 233, 431
Eco24I	GRGCYC	1 cut(s)	566
Eco32I	GATATC	1 cut(s)	400
EcoRV	GATATC	1 cut(s)	400
EcoT38I	GRGCYC	1 cut(s)	566
FaeI	CATG	1 cut(s)	562
FaiI	YATR	6 cut(s)	46, 179, 225, 305, 451, 560
FatI	CATG	1 cut(s)	558
Fnu4HI	GCNGC	4 cut(s)	300, 339, 357, 468
FokI	GGATG	2 cut(s)	160, 188
FriOI	GRGCYC	1 cut(s)	566
Fsp4HI	GCNGC	4 cut(s)	300, 339, 357, 468
GluI	GCNGC	4 cut(s)	300, 339, 357, 468
HapII	CCGG	2 cut(s)	379, 411
Hin1II	CATG	1 cut(s)	562
HincII	GTYRAC	1 cut(s)	241
HindII	GTYRAC	1 cut(s)	241
HinfI	GANTC	1 cut(s)	419
HpaI	GTTAAC	1 cut(s)	241
HpaII	CCGG	2 cut(s)	379, 411
HphI	GGTGA	2 cut(s)	44, 185
Hpy166II	GTNNAC	2 cut(s)	107, 241
Hpy188III	TCNNGA	3 cut(s)	33, 411, 567
Hpy8I	GTNNAC	2 cut(s)	107, 241
HpyAV	CCTTC	2 cut(s)	39, 71
HpyCH4III	ACNGT	4 cut(s)	70, 289, 320, 394
HpyCH4V	TGCA	1 cut(s)	470
HpyF10VI	GCNNNNNNNGC	2 cut(s)	515, 524
HpyF3I	CTNAG	2 cut(s)	83, 293
Hsp92II	CATG	1 cut(s)	562
Kpn2I	TCCGGA	1 cut(s)	410
KspAI	GTTAAC	1 cut(s)	241
Kzo9I	GATC	4 cut(s)	35, 162, 233, 431
LmnI	GCTCC	2 cut(s)	92, 514
LpnPI	CCDG	3 cut(s)	46, 392, 424
Lsp1109I	GCAGC	4 cut(s)	286, 325, 368, 454
MaeIII	GTNAC	1 cut(s)	70
MalI	GATC	4 cut(s)	37, 164, 235, 433
MboI	GATC	4 cut(s)	35, 162, 233, 431
MboII	GAAGA	2 cut(s)	30, 341
MflI	RGATCY	3 cut(s)	35, 162, 233
MhlI	GDGCHC	1 cut(s)	566
MluCI	AATT	4 cut(s)	189, 348, 445, 477
MnlI	CCTC	6 cut(s)	256, 265, 346, 429, 489, 538
MroI	TCCGGA	1 cut(s)	410
MroXI	GAANNNNTTC	1 cut(s)	418
MseI	TTAA	2 cut(s)	240, 456
MspA1I	CMGCKG	1 cut(s)	9
MspI	CCGG	2 cut(s)	379, 411
MspR9I	CCNGG	1 cut(s)	380
MwoI	GCNNNNNNNGC	2 cut(s)	515, 524
NciI	CCSGG	1 cut(s)	380
NdeII	GATC	4 cut(s)	35, 162, 233, 431
NlaIII	CATG	1 cut(s)	562
NspV	TTCGAA	1 cut(s)	388
PdmI	GAANNNNTTC	1 cut(s)	418
PfeI	GAWTC	1 cut(s)	419
PkrI	GCNGC	4 cut(s)	301, 340, 358, 469
PsuI	RGATCY	3 cut(s)	35, 162, 233
PvuII	CAGCTG	1 cut(s)	9
RsaI	GTAC	2 cut(s)	108, 317
RsaNI	GTAC	2 cut(s)	107, 316
SaqAI	TTAA	2 cut(s)	240, 456
SatI	GCNGC	4 cut(s)	300, 339, 357, 468
Sau3AI	GATC	4 cut(s)	35, 162, 233, 431
ScrFI	CCNGG	1 cut(s)	380
SduI	GDGCHC	1 cut(s)	566
SetI	ASST	4 cut(s)	11, 31, 89, 456
SfuI	TTCGAA	1 cut(s)	388
SmlI	CTYRAG	1 cut(s)	547
SmoI	CTYRAG	1 cut(s)	547
Sse9I	AATT	4 cut(s)	189, 348, 445, 477
SsiI	CCGC	1 cut(s)	58
SspI	AATATT	1 cut(s)	143
StyD4I	CCNGG	1 cut(s)	378
TaaI	ACNGT	4 cut(s)	70, 289, 320, 394
TaqI	TCGA	2 cut(s)	388, 434
TasI	AATT	4 cut(s)	189, 348, 445, 477
TatI	WGTACW	1 cut(s)	106
TfiI	GAWTC	1 cut(s)	419
Tru1I	TTAA	2 cut(s)	240, 456
Tru9I	TTAA	2 cut(s)	240, 456
TscAI	CASTG	1 cut(s)	301
TseI	GCWGC	4 cut(s)	299, 338, 356, 467
TspDTI	ATGAA	1 cut(s)	438
TspGWI	ACGGA	1 cut(s)	431
TspRI	CASTG	1 cut(s)	301
XapI	RAATTY	1 cut(s)	445
XmnI	GAANNNNTTC	1 cut(s)	418

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.