AT1G80560

Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
30287763 .. 30290299
2537 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G80560.1

Sequence Viewer

Length: 1218 bp
ATGGCGGCGGCTCTGCAGACGAATATCCGGACGGTCAAGGTTCCGGCTACGTTCAGAGCTGTAAGTAAACAGTCATTGGCACCCTTTAGAGTAAGATGTGCTGTTGCTTCCCCTGGTAAAAAACGATACACCATCACTCTCCTTCCCGGAGACGGCATCGGTCCGGAGGTTGTCTCCATTGCCAAAAATGTGCTTCAGCAAGCTGGATCTTTGGAAGGAGTGGAATTTAACTTCCGTGAGATGCCCATTGGAGGAGCTGCTTTGGATTTGGTCGGAGTGCCCTTGCCGGAGGAGACTATCTCAGCTGCAAAAGAATCAGATGCAGTGCTTCTTGGAGCCATTGGAGGGTACAAATGGGATAACAATGAAAAACATCTGAGGCCTGAGAAGGGGTTACTTCAGATTCGTGCAGCTCTCAAAGTCTTTGCAAATCTGAGACCTGCTACAGTCCTCCCACAGTTAGTGGATGCTTCCACCTTAAAGAGAGAGGTAGCAGAAGGTGTTGATCTAATGGTTGTAAGGGAGCTTACAGGAGGTATTTACTTTGGAGAGCCAAGGGGCATAAAGACCAATGAAAATGGCGAGGAAGTTGGGTTTAATACTGAGGTTTATGCTGCTCACGAGATTGATAGAATTGCTCGTGTTGCCTTCGAGACTGCTCGGAAACGGCGTGGCAAGCTGTGTTCTGTTGACAAAGCTAATGTTTTGGAAGCCTCAATCTTATGGAGGAAACGAGTAACAGCATTAGCCTCTGAATATCCTGATGTTGAGCTGTCACATATGTATGTTGACAATGCCGCGATGCAGCTTGTTCGTGACCCAAAACAGTTTGACACCATCGTCACAAACAACATTTTTGGTGATATATTATCCGATGAAGCTTCAATGATCACAGGAAGCATAGGAATGCTGCCATCTGCTAGTCTCAGTGATTCGGGACCTGGACTCTTTGAACCTATACATGGTTCTGCACCTGATATTGCTGGACAGGATAAGGCAAACCCATTGGCAACCATTCTAAGCGCTGCAATGCTTCTGAAATACGGACTTGGAGAAGAAAAGGCAGCCAAGAGAATTGAAGACGCAGTGTTGGTTGCTCTGAACAACGGATTCAGAACTGGAGACATATACTCCGCGGGAACAAAACTGGTGGGCTGCAAGGAGATGGGAGAGGAGGTTCTGAAGTCAGTGGACTCCCAAGTTCCAGCTTCTGTTTAA

Protein Analysis

405

Amino Acids

43.37

Weight (kDa)

5.8

Isoelectric Point (pI)

35.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Iso_dh PF00180 44 - 393 5.2e-145 Isocitrate/isopropylmalate dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 839
Acc36I ACCTGC 1 cut(s) 448
AccB1I GGYRCC 1 cut(s) 79
AccII CGCG 2 cut(s) 800, 1136
AccIII TCCGGA 2 cut(s) 27, 163
AciI CCGC 5 cut(s) 5, 8, 798, 1134, 1136
AclWI GGATC 1 cut(s) 214
AcsI RAATTY 1 cut(s) 224
AcuI CTGAAG 3 cut(s) 179, 383, 1202
AfaI GTAC 1 cut(s) 350
AfeI AGCGCT 1 cut(s) 1024
AfiI CCNNNNNNNGG 5 cut(s) 152, 251, 345, 389, 962
AgsI TTSAA 3 cut(s) 885, 953, 1079
AjnI CCWGG 2 cut(s) 112, 940
AloI GAACNNNNNNTCC 2 cut(s) 1161, 1193
Alw26I GTCTC 7 cut(s) 144, 178, 287, 430, 647, 929, 1116
AlwI GGATC 1 cut(s) 214
AlwNI CAGNNNCTG 1 cut(s) 1211
Aor13HI TCCGGA 2 cut(s) 27, 163
Aor51HI AGCGCT 1 cut(s) 1024
AoxI GGCC 1 cut(s) 380
ApeKI GCWGC 9 cut(s) 257, 305, 410, 614, 805, 910, 1025, 1064, 1155
ApoI RAATTY 1 cut(s) 224
AspLEI GCGC 1 cut(s) 1025
AspS9I GGNCC 2 cut(s) 161, 938
AsuC2I CCSGG 1 cut(s) 147
AsuHPI GGTGA 1 cut(s) 872
AvaII GGWCC 2 cut(s) 161, 938
BaeGI GKGCMC 1 cut(s) 282
BanI GGYRCC 1 cut(s) 79
BauI CACGAG 2 cut(s) 620, 639
BbsI GAAGAC 1 cut(s) 1086
BbvI GCAGC 9 cut(s) 244, 292, 422, 601, 817, 897, 1012, 1076, 1142
BccI CCATC 4 cut(s) 140, 845, 922, 1159
BceAI ACGGC 2 cut(s) 169, 683
BcgI CGANNNNNNTGC 2 cut(s) 794, 828
BciT130I CCWGG 2 cut(s) 114, 942
BclI TGATCA 1 cut(s) 888
BcnI CCSGG 1 cut(s) 147
BcoDI GTCTC 7 cut(s) 144, 178, 287, 430, 647, 929, 1116
BfaI CTAG 1 cut(s) 921
BfmI CTRYAG 2 cut(s) 14, 444
BfoI RGCGCY 1 cut(s) 1026
BfuAI ACCTGC 1 cut(s) 448
Bme1390I CCNGG 3 cut(s) 114, 147, 942
Bme18I GGWCC 2 cut(s) 161, 938
BmgT120I GGNCC 2 cut(s) 161, 938
BmiI GGNNCC 4 cut(s) 42, 81, 337, 939
BmrFI CCNGG 3 cut(s) 114, 147, 942
BmsI GCATC 5 cut(s) 165, 231, 310, 457, 792
BpiI GAAGAC 1 cut(s) 1086
BplI GAGNNNNNCTC 4 cut(s) 158, 190, 284, 316
BpmI CTGGAG 1 cut(s) 1140
BpuMI CCSGG 1 cut(s) 147
BsaI GGTCTC 1 cut(s) 430
BsaJI CCNNGG 3 cut(s) 112, 554, 1134
BsaWI WCCGGW 2 cut(s) 27, 163
BsaXI ACNNNNNCTCC 4 cut(s) 1115, 1145, 1161, 1191
Bsc4I CCNNNNNNNGG 5 cut(s) 152, 251, 345, 389, 962
Bse1I ACTGG 2 cut(s) 1123, 1152
Bse3DI GCAATG 2 cut(s) 177, 1035
BseAI TCCGGA 2 cut(s) 27, 163
BseBI CCWGG 2 cut(s) 114, 942
BseDI CCNNGG 3 cut(s) 112, 554, 1134
BseGI GGATG 1 cut(s) 472
BseLI CCNNNNNNNGG 5 cut(s) 152, 251, 345, 389, 962
BseMI GCAATG 2 cut(s) 177, 1035
BseMII CTCAG 6 cut(s) 315, 368, 375, 425, 594, 940
BseNI ACTGG 2 cut(s) 1123, 1152
BseRI GAGGAG 3 cut(s) 267, 305, 1187
BseSI GKGCMC 1 cut(s) 282
BseXI GCAGC 9 cut(s) 244, 292, 422, 601, 817, 897, 1012, 1076, 1142
BsgI GTGCAG 2 cut(s) 429, 954
Bsh1236I CGCG 2 cut(s) 800, 1136
BshFI GGCC 1 cut(s) 382
BshNI GGYRCC 1 cut(s) 79
BsiSI CCGG 5 cut(s) 28, 44, 147, 164, 287
BslFI GGGAC 1 cut(s) 951
BslI CCNNNNNNNGG 5 cut(s) 152, 251, 345, 389, 962
BsmAI GTCTC 7 cut(s) 144, 178, 287, 430, 647, 929, 1116
BsmBI CGTCTC 1 cut(s) 144
BsmFI GGGAC 1 cut(s) 951
BsmI GAATGC 1 cut(s) 912
BsnI GGCC 1 cut(s) 382
Bso31I GGTCTC 1 cut(s) 430
Bsp1286I GDGCHC 1 cut(s) 282
Bsp13I TCCGGA 2 cut(s) 27, 163
Bsp143I GATC 3 cut(s) 206, 505, 888
BspACI CCGC 5 cut(s) 5, 8, 798, 1134, 1136
BspANI GGCC 1 cut(s) 382
BspCNI CTCAG 6 cut(s) 314, 369, 376, 426, 595, 939
BspEI TCCGGA 2 cut(s) 27, 163
BspFNI CGCG 2 cut(s) 800, 1136
BspLI GGNNCC 4 cut(s) 42, 81, 337, 939
BspMAI CTGCAG 1 cut(s) 18
BspMI ACCTGC 1 cut(s) 448
BspPI GGATC 1 cut(s) 214
BspT107I GGYRCC 1 cut(s) 79
BspTNI GGTCTC 1 cut(s) 430
BsrDI GCAATG 2 cut(s) 177, 1035
BsrI ACTGG 2 cut(s) 1123, 1152
BssECI CCNNGG 3 cut(s) 112, 554, 1134
BssMI GATC 3 cut(s) 206, 505, 888
BssSI CACGAG 2 cut(s) 620, 639
BssT1I CCWWGG 1 cut(s) 554
Bst2BI CACGAG 2 cut(s) 620, 639
Bst2UI CCWGG 2 cut(s) 114, 942
Bst4CI ACNGT 5 cut(s) 34, 72, 448, 459, 828
BstC8I GCNNGC 2 cut(s) 201, 677
BstDEI CTNAG 7 cut(s) 301, 377, 384, 434, 603, 926, 1019
BstDSI CCRYGG 1 cut(s) 1134
BstF5I GGATG 1 cut(s) 472
BstFNI CGCG 2 cut(s) 800, 1136
BstH2I RGCGCY 1 cut(s) 1026
BstHHI GCGC 1 cut(s) 1025
BstKTI GATC 3 cut(s) 209, 508, 891
BstMAI GTCTC 7 cut(s) 144, 178, 287, 430, 647, 929, 1116
BstMBI GATC 3 cut(s) 206, 505, 888
BstMWI GCNNNNNNNGC 2 cut(s) 644, 676
BstNI CCWGG 2 cut(s) 114, 942
BstSCI CCNGG 3 cut(s) 112, 145, 940
BstSFI CTRYAG 2 cut(s) 14, 444
BstSLI GKGCMC 1 cut(s) 282
BstUI CGCG 2 cut(s) 800, 1136
BstV1I GCAGC 9 cut(s) 244, 292, 422, 601, 817, 897, 1012, 1076, 1142
BstV2I GAAGAC 1 cut(s) 1086
BstX2I RGATCY 1 cut(s) 206
BstYI RGATCY 1 cut(s) 206
BsuRI GGCC 1 cut(s) 382
BtgI CCRYGG 1 cut(s) 1134
BtgZI GCGATG 1 cut(s) 815
BtsCI GGATG 1 cut(s) 472
BtsI GCAGTG 2 cut(s) 330, 1092
BtsIMutI CAGTG 4 cut(s) 330, 934, 1092, 1194
BveI ACCTGC 1 cut(s) 448
Cac8I GCNNGC 2 cut(s) 201, 677
CaiI CAGNNNCTG 1 cut(s) 1211
CfoI GCGC 1 cut(s) 1025
Cfr13I GGNCC 2 cut(s) 161, 938
Cfr42I CCGCGG 1 cut(s) 1137
CpoI CGGWCCG 1 cut(s) 161
CseI GACGC 1 cut(s) 1091
Csp6I GTAC 1 cut(s) 349
CspCI CAANNNNNGTGG 2 cut(s) 1131, 1166
CspI CGGWCCG 1 cut(s) 161
CviAII CATG 1 cut(s) 962
CviQI GTAC 1 cut(s) 349
DdeI CTNAG 7 cut(s) 301, 377, 384, 434, 603, 926, 1019
DpnI GATC 3 cut(s) 208, 507, 890
DpnII GATC 3 cut(s) 206, 505, 888
DrdI GACNNNNNNGTC 1 cut(s) 839
DseDI GACNNNNNNGTC 1 cut(s) 839
Eco130I CCWWGG 1 cut(s) 554
Eco147I AGGCCT 1 cut(s) 382
Eco31I GGTCTC 1 cut(s) 430
Eco47I GGWCC 2 cut(s) 161, 938
Eco47III AGCGCT 1 cut(s) 1024
Eco57I CTGAAG 3 cut(s) 179, 383, 1202
EcoO109I RGGNCCY 1 cut(s) 938
EcoRII CCWGG 2 cut(s) 112, 940
EcoT14I CCWWGG 1 cut(s) 554
ErhI CCWWGG 1 cut(s) 554
Esp3I CGTCTC 1 cut(s) 144
FaeI CATG 1 cut(s) 965
FaqI GGGAC 1 cut(s) 951
FatI CATG 1 cut(s) 961
FauI CCCGC 1 cut(s) 1129
FauNDI CATATG 1 cut(s) 780
FbaI TGATCA 1 cut(s) 888
FokI GGATG 1 cut(s) 479
FspBI CTAG 1 cut(s) 921
GlaI GCGC 1 cut(s) 1024
GsuI CTGGAG 1 cut(s) 1140
HaeII RGCGCY 1 cut(s) 1026
HaeIII GGCC 1 cut(s) 382
HapII CCGG 5 cut(s) 28, 44, 147, 164, 287
HgaI GACGC 1 cut(s) 1091
HhaI GCGC 1 cut(s) 1025
Hin1II CATG 1 cut(s) 965
Hin6I GCGC 1 cut(s) 1023
HinP1I GCGC 1 cut(s) 1023
HincII GTYRAC 2 cut(s) 691, 790
HindII GTYRAC 2 cut(s) 691, 790
HindIII AAGCTT 1 cut(s) 879
HinfI GANTC 6 cut(s) 314, 403, 932, 945, 1110, 1193
HpaII CCGG 5 cut(s) 28, 44, 147, 164, 287
HphI GGTGA 1 cut(s) 872
Hpy166II GTNNAC 4 cut(s) 68, 691, 790, 1192
Hpy188III TCNNGA 7 cut(s) 28, 164, 620, 652, 761, 815, 936
Hpy8I GTNNAC 4 cut(s) 68, 691, 790, 1192
HpyAV CCTTC 5 cut(s) 152, 209, 382, 491, 658
HpyCH4III ACNGT 5 cut(s) 34, 72, 448, 459, 828
HpyCH4IV ACGT 1 cut(s) 50
HpyCH4V TGCA 9 cut(s) 16, 308, 323, 410, 428, 805, 971, 1028, 1158
HpyF10VI GCNNNNNNNGC 2 cut(s) 644, 676
HpyF3I CTNAG 7 cut(s) 301, 377, 384, 434, 603, 926, 1019
HpySE526I ACGT 1 cut(s) 50
Hsp92II CATG 1 cut(s) 965
HspAI GCGC 1 cut(s) 1023
Kpn2I TCCGGA 2 cut(s) 27, 163
Ksp22I TGATCA 1 cut(s) 888
KspI CCGCGG 1 cut(s) 1137
Kzo9I GATC 3 cut(s) 206, 505, 888
LmnI GCTCC 3 cut(s) 254, 335, 523
Lsp1109I GCAGC 9 cut(s) 244, 292, 422, 601, 817, 897, 1012, 1076, 1142
LweI GCATC 5 cut(s) 165, 231, 310, 457, 792
MaeI CTAG 1 cut(s) 921
MaeII ACGT 1 cut(s) 50
MaeIII GTNAC 5 cut(s) 393, 736, 774, 815, 841
MalI GATC 3 cut(s) 208, 507, 890
MboI GATC 3 cut(s) 206, 505, 888
MboII GAAGA 2 cut(s) 1067, 1091
MflI RGATCY 1 cut(s) 206
MhlI GDGCHC 1 cut(s) 282
MluCI AATT 3 cut(s) 224, 633, 1074
MlyI GAGTC 2 cut(s) 939, 1187
MmeI TCCRAC 1 cut(s) 253
MroI TCCGGA 2 cut(s) 27, 163
MseI TTAA 4 cut(s) 228, 479, 597, 1216
MslI CAYNNNNRTG 2 cut(s) 783, 905
MspA1I CMGCKG 2 cut(s) 305, 1136
MspI CCGG 5 cut(s) 28, 44, 147, 164, 287
MspR9I CCNGG 3 cut(s) 114, 147, 942
Mva1269I GAATGC 1 cut(s) 912
MvaI CCWGG 2 cut(s) 114, 942
MvnI CGCG 2 cut(s) 800, 1136
MwoI GCNNNNNNNGC 2 cut(s) 644, 676
NciI CCSGG 1 cut(s) 147
NdeI CATATG 1 cut(s) 780
NdeII GATC 3 cut(s) 206, 505, 888
NlaIII CATG 1 cut(s) 965
NlaIV GGNNCC 4 cut(s) 42, 81, 337, 939
NmuCI GTSAC 3 cut(s) 774, 815, 841
PceI AGGCCT 1 cut(s) 382
PcsI WCGNNNNNNNCGW 1 cut(s) 667
PctI GAATGC 1 cut(s) 912
PfeI GAWTC 4 cut(s) 314, 403, 932, 1110
PfoI TCCNGGA 1 cut(s) 145
PleI GAGTC 2 cut(s) 939, 1187
PpsI GAGTC 2 cut(s) 939, 1187
PpuMI RGGWCCY 1 cut(s) 938
Psp5II RGGWCCY 1 cut(s) 938
Psp6I CCWGG 2 cut(s) 112, 940
PspGI CCWGG 2 cut(s) 112, 940
PspN4I GGNNCC 4 cut(s) 42, 81, 337, 939
PspPI GGNCC 2 cut(s) 161, 938
PspPPI RGGWCCY 1 cut(s) 938
PstI CTGCAG 1 cut(s) 18
PstNI CAGNNNCTG 1 cut(s) 1211
PsuI RGATCY 1 cut(s) 206
PvuII CAGCTG 1 cut(s) 305
RsaI GTAC 1 cut(s) 350
RsaNI GTAC 1 cut(s) 349
RseI CAYNNNNRTG 2 cut(s) 783, 905
Rsr2I CGGWCCG 1 cut(s) 161
RsrII CGGWCCG 1 cut(s) 161
SacII CCGCGG 1 cut(s) 1137
SaqAI TTAA 4 cut(s) 228, 479, 597, 1216
Sau3AI GATC 3 cut(s) 206, 505, 888
Sau96I GGNCC 2 cut(s) 161, 938
SchI GAGTC 2 cut(s) 939, 1187
ScrFI CCNGG 3 cut(s) 114, 147, 942
SduI GDGCHC 1 cut(s) 282
SfaNI GCATC 5 cut(s) 165, 231, 310, 457, 792
SfcI CTRYAG 2 cut(s) 14, 444
Sfr303I CCGCGG 1 cut(s) 1137
SgrBI CCGCGG 1 cut(s) 1137
SinI GGWCC 2 cut(s) 161, 938
SmiMI CAYNNNNRTG 2 cut(s) 783, 905
Sse9I AATT 3 cut(s) 224, 633, 1074
SseBI AGGCCT 1 cut(s) 382
SsiI CCGC 5 cut(s) 5, 8, 798, 1134, 1136
SspMI CTAG 1 cut(s) 921
StuI AGGCCT 1 cut(s) 382
StyD4I CCNGG 3 cut(s) 112, 145, 940
StyI CCWWGG 1 cut(s) 554
TaaI ACNGT 5 cut(s) 34, 72, 448, 459, 828
TaiI ACGT 1 cut(s) 53
TaqI TCGA 1 cut(s) 651
TaqII GACCGA 1 cut(s) 149
TasI AATT 3 cut(s) 224, 633, 1074
TauI GCSGC 3 cut(s) 8, 11, 800
TfiI GAWTC 4 cut(s) 314, 403, 932, 1110
Tru1I TTAA 4 cut(s) 228, 479, 597, 1216
Tru9I TTAA 4 cut(s) 228, 479, 597, 1216
TscAI CASTG 4 cut(s) 330, 934, 1092, 1194
TseFI GTSAC 3 cut(s) 774, 815, 841
TseI GCWGC 9 cut(s) 257, 305, 410, 614, 805, 910, 1025, 1064, 1155
Tsp45I GTSAC 3 cut(s) 774, 815, 841
TspDTI ATGAA 3 cut(s) 381, 588, 891
TspGWI ACGGA 3 cut(s) 224, 1059, 1122
TspRI CASTG 4 cut(s) 330, 934, 1092, 1194
VpaK11BI GGWCC 2 cut(s) 161, 938
XapI RAATTY 1 cut(s) 224
XspI CTAG 1 cut(s) 921
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.