Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003682.1

Orthogroup ID

OG0006646

Physical Location & Seq

Genomic Coordinates Reverse (-)

13227 .. 16597

Gene Structure 3371 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003682.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

atgggggtggctcgaggtctggcaagggagtcctggctgatcggtttgtgcaggttttggtgggtcgtcggagcttccacgacttctggcggcgggatttcgtcggagctctcctggacatgtgatggtggcgtggctatggcggtttttctgggtgatggtggggcagcgcaactttggtggtctgggaggatcgctgcaggggcgaggccatggtcaatctggaccgatcggtgtggcggcatggctaggcaattctgtgcgatctcgtggggtcgcggccacttcaggtctggaggtgatcgtcggcgctggcggaggacggtttggtggctggctcgggtcaatcttttggtgggccttgggctggactcatctccttgggctgctctcttgggccttattttgggctgtattttcgaggccgtggcggcacagaataatccggtgaatgtgggaatcggggtggttcttgatttcgatacggggtttgggaagatggggctgagctgcatcaacatgtctctctctgacttctatgcctctcatcccaattacaccaccaggctgcttctgcaccagaggaactcacccacagacgttgttcttacagctgctgcagaaaccaccgccgcccaccttgaagatctcaactccaggagtccagaaccagcgaccccgcccccagaacctgccggaaaatattcgaaccagccaccggaaatatctatatcctccctgcccggttcgaagctttcctccctgcctactgctaccaaacttcaccgcaagctgcaaccagaccccagatcaccggagccgaaaaatctccaccagaaccggcctataaccatctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0007154 GO:0007165 GO:0008066 GO:0008150 GO:0008324 GO:0009719 GO:0009987 GO:0010033 GO:0010243 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0019722 GO:0019932 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0034220 GO:0035556 GO:0038023 GO:0042221 GO:0043200 GO:0044464 GO:0046873 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0060089 GO:0065007 GO:0070588 GO:0070838 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

285

Amino Acids

30.78

Weight (kDa)

9.38

Isoelectric Point (pI)

52.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006646)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31180 AT1G31180 AT1G80560 AT5G14200 AT5G14200
fragaria_vesca	FvH4_2g04971
malus_domestica	MD17G1218700.v1.1
prunus_persica	Prupe.3G094300_v2.0.a1 Prupe.3G094300_v2.0.a1
pyrus_communis	pycom17g22270 pycom17g22330
rosa_chinensis	RchiOBHm_Chr2g0133781 RchiOBHm_Chr2g0133821
rosa_laevigata	RLG00000019364
rosa_multiflora	Rmu_sc0001782.1_g000049 Rmu_sc0001782.1_g000053 Rmu_sc0003682.1_g000003 Rmu_sc0004983.1_g000001
rosa_roxburghii	Rroxscaffold_2G00110790 Rroxscaffold_2G00110820
rosa_rugosa	Rorug02G0313900
rosa_samantha	Rh2AG367200 Rh2CG350300 Rh2CG350600 Rh2DG389700
rosa_wichuraiana	Rw2G029860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	42, 700
AccII	CGCG	1 cut(s)	279
AclWI	GGATC	1 cut(s)	200
AcoI	YGGCCR	1 cut(s)	280
AcuI	CTGAAG	1 cut(s)	271
AfiI	CCNNNNNNNGG	3 cut(s)	367, 406, 718
AflIII	ACRYGT	2 cut(s)	119, 519
AgsI	TTSAA	1 cut(s)	644
AjnI	CCWGG	4 cut(s)	32, 113, 563, 656
AluBI	AGCT	6 cut(s)	74, 109, 510, 614, 754, 793
AluI	AGCT	6 cut(s)	74, 109, 510, 614, 754, 793
Alw21I	GWGCWC	1 cut(s)	111
Alw26I	GTCTC	1 cut(s)	528
AlwI	GGATC	1 cut(s)	200
AlwNI	CAGNNNCTG	2 cut(s)	617, 692
Ama87I	CYCGRG	2 cut(s)	12, 339
AoxI	GGCC	6 cut(s)	209, 280, 358, 397, 423, 842
ApeKI	GCWGC	8 cut(s)	167, 197, 386, 510, 568, 614, 617, 793
Asp700I	GAANNNNTTC	1 cut(s)	703
AspLEI	GCGC	2 cut(s)	172, 312
AspS9I	GGNCC	3 cut(s)	225, 358, 397
AsuC2I	CCSGG	1 cut(s)	744
AsuHPI	GGTGA	6 cut(s)	167, 311, 460, 582, 776, 804
AsuII	TTCGAA	2 cut(s)	707, 749
AvaI	CYCGRG	2 cut(s)	12, 339
AvaII	GGWCC	1 cut(s)	225
BanII	GRGCYC	1 cut(s)	111
BauI	CACGAG	1 cut(s)	268
Bbv12I	GWGCWC	1 cut(s)	111
BbvI	GCAGC	8 cut(s)	179, 184, 373, 497, 555, 601, 604, 780
BccI	CCATC	3 cut(s)	119, 152, 493
BceAI	ACGGC	1 cut(s)	410
BciT130I	CCWGG	4 cut(s)	34, 115, 565, 658
BcnI	CCSGG	1 cut(s)	744
BcoDI	GTCTC	1 cut(s)	528
BfaI	CTAG	1 cut(s)	249
BfmI	CTRYAG	2 cut(s)	198, 618
BfoI	RGCGCY	1 cut(s)	313
BfuAI	ACCTGC	2 cut(s)	42, 700
BglI	GCCNNNNNGGC	1 cut(s)	431
BglII	AGATCT	1 cut(s)	646
BlpI	GCTNAGC	1 cut(s)	506
Bme1390I	CCNGG	5 cut(s)	34, 115, 565, 658, 744
Bme18I	GGWCC	1 cut(s)	225
BmeT110I	CYCGRG	2 cut(s)	12, 339
BmgT120I	GGNCC	3 cut(s)	225, 358, 397
BmiI	GGNNCC	1 cut(s)	819
BmrFI	CCNGG	5 cut(s)	34, 115, 565, 658, 744
BmsI	GCATC	1 cut(s)	522
BpmI	CTGGAG	2 cut(s)	315, 640
Bpu1102I	GCTNAGC	1 cut(s)	506
Bpu14I	TTCGAA	2 cut(s)	707, 749
BpuMI	CCSGG	1 cut(s)	744
BsaJI	CCNNGG	4 cut(s)	212, 361, 380, 426
BsaWI	WCCGGW	3 cut(s)	445, 718, 814
Bsc4I	CCNNNNNNNGG	3 cut(s)	367, 406, 718
Bse118I	RCCGGY	1 cut(s)	840
BseBI	CCWGG	4 cut(s)	34, 115, 565, 658
BseDI	CCNNGG	4 cut(s)	212, 361, 380, 426
BseGI	GGATG	1 cut(s)	547
BseLI	CCNNNNNNNGG	3 cut(s)	367, 406, 718
BseMII	CTCAG	1 cut(s)	497
BseXI	GCAGC	8 cut(s)	179, 184, 373, 497, 555, 601, 604, 780
BsgI	GTGCAG	2 cut(s)	70, 560
Bsh1236I	CGCG	1 cut(s)	279
Bsh1285I	CGRYCG	1 cut(s)	232
BshFI	GGCC	6 cut(s)	211, 282, 360, 399, 425, 844
BsiEI	CGRYCG	1 cut(s)	232
BsiHKAI	GWGCWC	1 cut(s)	111
BsiHKCI	CYCGRG	2 cut(s)	12, 339
BsiSI	CCGG	6 cut(s)	446, 696, 719, 744, 815, 841
BslI	CCNNNNNNNGG	3 cut(s)	367, 406, 718
BsmAI	GTCTC	1 cut(s)	528
BsnI	GGCC	6 cut(s)	211, 282, 360, 399, 425, 844
BsoBI	CYCGRG	2 cut(s)	12, 339
Bsp119I	TTCGAA	2 cut(s)	707, 749
Bsp1286I	GDGCHC	1 cut(s)	111
Bsp143I	GATC	7 cut(s)	39, 192, 229, 264, 301, 646, 809
Bsp1720I	GCTNAGC	1 cut(s)	506
Bsp19I	CCATGG	1 cut(s)	212
BspANI	GGCC	6 cut(s)	211, 282, 360, 399, 425, 844
BspCNI	CTCAG	1 cut(s)	498
BspFNI	CGCG	1 cut(s)	279
BspLI	GGNNCC	1 cut(s)	819
BspMAI	CTGCAG	2 cut(s)	202, 622
BspMI	ACCTGC	2 cut(s)	42, 700
BspPI	GGATC	1 cut(s)	200
BspT104I	TTCGAA	2 cut(s)	707, 749
BsrFI	RCCGGY	1 cut(s)	840
BssAI	RCCGGY	1 cut(s)	840
BssECI	CCNNGG	4 cut(s)	212, 361, 380, 426
BssMI	GATC	7 cut(s)	39, 192, 229, 264, 301, 646, 809
BssSI	CACGAG	1 cut(s)	268
BssT1I	CCWWGG	3 cut(s)	212, 361, 380
Bst2BI	CACGAG	1 cut(s)	268
Bst2UI	CCWGG	4 cut(s)	34, 115, 565, 658
Bst4CI	ACNGT	1 cut(s)	325
BstBI	TTCGAA	2 cut(s)	707, 749
BstC8I	GCNNGC	3 cut(s)	314, 336, 791
BstDEI	CTNAG	1 cut(s)	506
BstDSI	CCRYGG	2 cut(s)	212, 426
BstF5I	GGATG	1 cut(s)	547
BstFNI	CGCG	1 cut(s)	279
BstH2I	RGCGCY	1 cut(s)	313
BstHHI	GCGC	2 cut(s)	172, 312
BstKTI	GATC	7 cut(s)	42, 195, 232, 267, 304, 649, 812
BstMAI	GTCTC	1 cut(s)	528
BstMBI	GATC	7 cut(s)	39, 192, 229, 264, 301, 646, 809
BstMCI	CGRYCG	1 cut(s)	232
BstMWI	GCNNNNNNNGC	3 cut(s)	203, 431, 574
BstNI	CCWGG	4 cut(s)	34, 115, 565, 658
BstNSI	RCATGY	2 cut(s)	123, 523
BstSCI	CCNGG	5 cut(s)	32, 113, 563, 656, 742
BstSFI	CTRYAG	2 cut(s)	198, 618
BstUI	CGCG	1 cut(s)	279
BstV1I	GCAGC	8 cut(s)	179, 184, 373, 497, 555, 601, 604, 780
BstX2I	RGATCY	1 cut(s)	646
BstYI	RGATCY	1 cut(s)	646
BsuRI	GGCC	6 cut(s)	211, 282, 360, 399, 425, 844
BtgI	CCRYGG	2 cut(s)	212, 426
BtsCI	GGATG	1 cut(s)	547
BveI	ACCTGC	2 cut(s)	42, 700
Cac8I	GCNNGC	3 cut(s)	314, 336, 791
CaiI	CAGNNNCTG	2 cut(s)	617, 692
CfoI	GCGC	2 cut(s)	172, 312
Cfr10I	RCCGGY	1 cut(s)	840
Cfr13I	GGNCC	3 cut(s)	225, 358, 397
CspCI	CAANNNNNGTGG	4 cut(s)	161, 196, 583, 618
CviAII	CATG	4 cut(s)	120, 213, 244, 520
DdeI	CTNAG	1 cut(s)	506
DpnI	GATC	7 cut(s)	41, 194, 231, 266, 303, 648, 811
DpnII	GATC	7 cut(s)	39, 192, 229, 264, 301, 646, 809
EaeI	YGGCCR	1 cut(s)	280
EciI	GGCGGA	1 cut(s)	331
Ecl136II	GAGCTC	1 cut(s)	109
Eco130I	CCWWGG	3 cut(s)	212, 361, 380
Eco24I	GRGCYC	1 cut(s)	111
Eco47I	GGWCC	1 cut(s)	225
Eco53kI	GAGCTC	1 cut(s)	109
Eco57I	CTGAAG	1 cut(s)	271
Eco88I	CYCGRG	2 cut(s)	12, 339
EcoICRI	GAGCTC	1 cut(s)	109
EcoRII	CCWGG	4 cut(s)	32, 113, 563, 656
EcoT14I	CCWWGG	3 cut(s)	212, 361, 380
EcoT38I	GRGCYC	1 cut(s)	111
ErhI	CCWWGG	3 cut(s)	212, 361, 380
FaeI	CATG	4 cut(s)	123, 216, 247, 523
FaiI	YATR	8 cut(s)	121, 140, 214, 245, 521, 540, 731, 848
FatI	CATG	4 cut(s)	119, 212, 243, 519
FauI	CCCGC	2 cut(s)	86, 687
FokI	GGATG	1 cut(s)	534
FriOI	GRGCYC	1 cut(s)	111
FspBI	CTAG	1 cut(s)	249
GlaI	GCGC	2 cut(s)	171, 311
GsuI	CTGGAG	2 cut(s)	315, 640
HaeII	RGCGCY	1 cut(s)	313
HaeIII	GGCC	6 cut(s)	211, 282, 360, 399, 425, 844
HapII	CCGG	6 cut(s)	446, 696, 719, 744, 815, 841
HhaI	GCGC	2 cut(s)	172, 312
Hin1II	CATG	4 cut(s)	123, 216, 247, 523
Hin6I	GCGC	2 cut(s)	170, 310
HinP1I	GCGC	2 cut(s)	170, 310
HindIII	AAGCTT	1 cut(s)	752
HinfI	GANTC	4 cut(s)	29, 371, 459, 661
HpaII	CCGG	6 cut(s)	446, 696, 719, 744, 815, 841
HphI	GGTGA	6 cut(s)	167, 311, 460, 582, 776, 804
Hpy188I	TCNGA	4 cut(s)	71, 106, 532, 857
Hpy188III	TCNNGA	4 cut(s)	223, 294, 473, 665
Hpy99I	CGWCG	3 cut(s)	71, 106, 309
HpyCH4III	ACNGT	1 cut(s)	325
HpyCH4IV	ACGT	1 cut(s)	600
HpyCH4V	TGCA	6 cut(s)	51, 200, 513, 577, 620, 796
HpyF10VI	GCNNNNNNNGC	3 cut(s)	203, 431, 574
HpyF3I	CTNAG	1 cut(s)	506
HpySE526I	ACGT	1 cut(s)	600
Hsp92II	CATG	4 cut(s)	123, 216, 247, 523
HspAI	GCGC	2 cut(s)	170, 310
Kzo9I	GATC	7 cut(s)	39, 192, 229, 264, 301, 646, 809
LmnI	GCTCC	3 cut(s)	71, 106, 817
Lsp1109I	GCAGC	8 cut(s)	179, 184, 373, 497, 555, 601, 604, 780
LweI	GCATC	1 cut(s)	522
MaeI	CTAG	1 cut(s)	249
MaeII	ACGT	1 cut(s)	600
MalI	GATC	7 cut(s)	41, 194, 231, 266, 303, 648, 811
MboI	GATC	7 cut(s)	39, 192, 229, 264, 301, 646, 809
MboII	GAAGA	2 cut(s)	508, 656
MflI	RGATCY	1 cut(s)	646
MhlI	GDGCHC	1 cut(s)	111
MluCI	AATT	2 cut(s)	254, 553
MlyI	GAGTC	3 cut(s)	38, 365, 670
MmeI	TCCRAC	2 cut(s)	49, 84
MroXI	GAANNNNTTC	1 cut(s)	703
MslI	CAYNNNNRTG	1 cut(s)	518
MspA1I	CMGCKG	1 cut(s)	614
MspI	CCGG	6 cut(s)	446, 696, 719, 744, 815, 841
MspR9I	CCNGG	5 cut(s)	34, 115, 565, 658, 744
MvaI	CCWGG	4 cut(s)	34, 115, 565, 658
MvnI	CGCG	1 cut(s)	279
MwoI	GCNNNNNNNGC	3 cut(s)	203, 431, 574
NciI	CCSGG	1 cut(s)	744
NcoI	CCATGG	1 cut(s)	212
NdeII	GATC	7 cut(s)	39, 192, 229, 264, 301, 646, 809
NlaIII	CATG	4 cut(s)	123, 216, 247, 523
NlaIV	GGNNCC	1 cut(s)	819
NspI	RCATGY	2 cut(s)	123, 523
NspV	TTCGAA	2 cut(s)	707, 749
PaeR7I	CTCGAG	1 cut(s)	12
PciI	ACATGT	2 cut(s)	119, 519
PdmI	GAANNNNTTC	1 cut(s)	703
PfeI	GAWTC	1 cut(s)	459
PfoI	TCCNGGA	2 cut(s)	113, 656
Ple19I	CGATCG	1 cut(s)	232
PleI	GAGTC	3 cut(s)	37, 365, 669
PpsI	GAGTC	3 cut(s)	37, 365, 669
PscI	ACATGT	2 cut(s)	119, 519
Psp124BI	GAGCTC	1 cut(s)	111
Psp6I	CCWGG	4 cut(s)	32, 113, 563, 656
PspGI	CCWGG	4 cut(s)	32, 113, 563, 656
PspN4I	GGNNCC	1 cut(s)	819
PspPI	GGNCC	3 cut(s)	225, 358, 397
PspXI	VCTCGAGB	1 cut(s)	12
PstI	CTGCAG	2 cut(s)	202, 622
PstNI	CAGNNNCTG	2 cut(s)	617, 692
PsuI	RGATCY	1 cut(s)	646
PvuI	CGATCG	1 cut(s)	232
PvuII	CAGCTG	1 cut(s)	614
RseI	CAYNNNNRTG	1 cut(s)	518
SacI	GAGCTC	1 cut(s)	111
Sau3AI	GATC	7 cut(s)	39, 192, 229, 264, 301, 646, 809
Sau96I	GGNCC	3 cut(s)	225, 358, 397
SchI	GAGTC	3 cut(s)	38, 365, 670
ScrFI	CCNGG	5 cut(s)	34, 115, 565, 658, 744
SduI	GDGCHC	1 cut(s)	111
SfaNI	GCATC	1 cut(s)	522
SfcI	CTRYAG	2 cut(s)	198, 618
Sfr274I	CTCGAG	1 cut(s)	12
SfuI	TTCGAA	2 cut(s)	707, 749
SinI	GGWCC	1 cut(s)	225
SlaI	CTCGAG	1 cut(s)	12
SmiMI	CAYNNNNRTG	1 cut(s)	518
SmlI	CTYRAG	1 cut(s)	12
SmoI	CTYRAG	1 cut(s)	12
Sse9I	AATT	2 cut(s)	254, 553
SspI	AATATT	1 cut(s)	704
SspMI	CTAG	1 cut(s)	249
SstI	GAGCTC	1 cut(s)	111
StyD4I	CCNGG	5 cut(s)	32, 113, 563, 656, 742
StyI	CCWWGG	3 cut(s)	212, 361, 380
TaaI	ACNGT	1 cut(s)	325
TaiI	ACGT	1 cut(s)	603
TaqI	TCGA	5 cut(s)	13, 420, 480, 707, 749
TaqII	GACCGA	1 cut(s)	242
TasI	AATT	2 cut(s)	254, 553
TauI	GCSGC	5 cut(s)	93, 243, 282, 434, 635
TfiI	GAWTC	1 cut(s)	459
TseI	GCWGC	8 cut(s)	167, 197, 386, 510, 568, 614, 617, 793
VpaK11BI	GGWCC	1 cut(s)	225
XceI	RCATGY	2 cut(s)	123, 523
XcmI	CCANNNNNNNNNTGG	2 cut(s)	219, 290
XhoI	CTCGAG	1 cut(s)	12
XmnI	GAANNNNTTC	1 cut(s)	703
XspI	CTAG	1 cut(s)	249

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.