Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0006646

Physical Location & Seq

Genomic Coordinates Forward (+)

7067252 .. 7073206

Gene Structure 5955 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G094300.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1215 bp

ATGGCTGCTTGTCTGCAACTCAACGCTAAACCCTTCAGCCCTCTTCTTTCTCCTAACCCCGTTTCCACAGGCACCCGGAAATTGGGTAGGATCAGCTGCTCCGCAGCCTCGCCTTCCAAACGCCACACCATCACTTTGCTTCCTGGCGATGGCATTGGCCCCGAAGTCATCTCCGTCGCCAGGAACGTTCTCAACCTCGCCGCCTCTATCGAAGGGATTGAGTTCAAGTATCAAGAAGTTCCTGTGGGCGGAGCTGCATTGGATTTGACCGGAGTTCCATTACCGGAAGAGACCCTTTTGGCTGCTAAGCAATCTGATGCAGTTCTGCTCGGAGCAATTGGGGGGTACAAATGGGACAAAAACGAAAAGCATTTGAAACCAGAAACTGGGTTACTTAAGCTTCGAGAAGGTCTTAAAGTATTTGCGAATTTGAGGCCTGCAACTGTTTTACCGCAGTTGGTGGATGCTTCAACTTTGAAGAGAGAGGTTGCTGAAGGGGTGGACCTTATGGTTGTAAGAGAGCTAACTGGAGGTATATATTTTGGAAAGCCAAGGGGTTTTGGCACCAATGAAAATGGAGAGGAGATTGGCTTCAATACGGAGGTGTATGCCGCCTATGAGATCGATCGCATTGCTCGTGTTGCATTTGAGACTGCTCGGAAGCGGAAGGGAAAGCTCTGCAGTGTTGATAAAGCAAATGTGTTGGAGGCATCAATGTTTTGGAGGAAAAGAATCATGGCAATAGCCTTGGAATATCCTGACGTTGAACTCTCACACATGTATGTTGATAATGCTGCAATGCAGCTTGTTCGTGATCCAAAACAGTTTGATACGATTGTAACAAACAACATATTTGGCGATATATTATCTGATGAGGCGTCGATGATTACTGGAAGTATTGGGATGCTTCCATCTGCTAGTCTTGGGGAATCGGGTCCTGGACTTTTTGAACCAATACATGGTTCTGCTCCTGATATTGCTGGACAGGATAAAGCAAATCCATTAGCAACAATTCTCAGTGCTGCTATGCTTTTAAAGTACGGTCTAGGGGAAGAAAAAGCTGCCAAGAGAATTGAGGCTGCAGTTCTAGATACTTTGAATAAGGGGTTTCGAACGGGTGACATTTATTCGGCAGGAACTAAGTTGGTAGGCTGCAAAGAAATGGGTGAAGAGGTATTGAAGTCGGTAGATTCGCTAGTTCCTTCTTCAGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006790 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009651 GO:0009941 GO:0009987 GO:0016143 GO:0016144 GO:0019748 GO:0019757 GO:0019758 GO:0019760 GO:0019761 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044249 GO:0044272 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0050896 GO:0071704 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00290 ko00660 ko00966 ko01100 ko01110 ko01210 ko01230 map00290 map00660 map00966 map01100 map01110 map01210 map01230

Pfam Domains

Protein Families

Iso_dh

Protein Analysis

405

Amino Acids

43.18

Weight (kDa)

5.79

Isoelectric Point (pI)

34.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006646)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31180 AT1G31180 AT1G80560 AT5G14200 AT5G14200
fragaria_vesca	FvH4_2g04971
malus_domestica	MD17G1218700.v1.1
prunus_persica	Prupe.3G094300_v2.0.a1 Prupe.3G094300_v2.0.a1
pyrus_communis	pycom17g22270 pycom17g22330
rosa_chinensis	RchiOBHm_Chr2g0133781 RchiOBHm_Chr2g0133821
rosa_laevigata	RLG00000019364
rosa_multiflora	Rmu_sc0001782.1_g000049 Rmu_sc0001782.1_g000053 Rmu_sc0003682.1_g000003 Rmu_sc0004983.1_g000001
rosa_roxburghii	Rroxscaffold_2G00110790 Rroxscaffold_2G00110820
rosa_rugosa	Rorug02G0313900
rosa_samantha	Rh2AG367200 Rh2CG350300 Rh2CG350600 Rh2DG389700
rosa_wichuraiana	Rw2G029860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	71, 563
AccB7I	CCANNNNNTGG	2 cut(s)	386, 959
AciI	CCGC	6 cut(s)	102, 201, 249, 452, 612, 664
AclI	AACGTT	1 cut(s)	186
AclWI	GGATC	2 cut(s)	98, 809
AcsI	RAATTY	1 cut(s)	427
AcuI	CTGAAG	3 cut(s)	19, 513, 1191
AcyI	GRCGYC	1 cut(s)	878
AfaI	GTAC	2 cut(s)	347, 1040
AfiI	CCNNNNNNNGG	6 cut(s)	82, 149, 180, 248, 386, 959
AflII	CTTAAG	1 cut(s)	395
AflIII	ACRYGT	1 cut(s)	777
AgsI	TTSAA	9 cut(s)	226, 376, 471, 478, 595, 767, 950, 1099, 1180
AjnI	CCWGG	3 cut(s)	142, 179, 937
AjuI	GAANNNNNNNTTGG	2 cut(s)	946, 978
AluBI	AGCT	7 cut(s)	96, 254, 400, 523, 676, 805, 1061
AluI	AGCT	7 cut(s)	96, 254, 400, 523, 676, 805, 1061
Alw26I	GTCTC	2 cut(s)	284, 644
AlwI	GGATC	2 cut(s)	98, 809
AlwNI	CAGNNNCTG	1 cut(s)	386
AoxI	GGCC	2 cut(s)	157, 434
ApoI	RAATTY	1 cut(s)	427
AspS9I	GGNCC	3 cut(s)	158, 502, 935
AsuC2I	CCSGG	1 cut(s)	76
AsuHPI	GGTGA	2 cut(s)	1130, 1178
AsuII	TTCGAA	1 cut(s)	1111
AvaII	GGWCC	2 cut(s)	502, 935
BaeI	ACNNNNGTAYC	2 cut(s)	822, 855
BanI	GGYRCC	2 cut(s)	71, 563
BauI	CACGAG	1 cut(s)	636
BccI	CCATC	3 cut(s)	137, 143, 919
BcgI	CGANNNNNNTGC	4 cut(s)	614, 648, 791, 825
BciT130I	CCWGG	3 cut(s)	144, 181, 939
BcnI	CCSGG	1 cut(s)	76
BcoDI	GTCTC	2 cut(s)	284, 644
BfaI	CTAG	4 cut(s)	918, 1046, 1088, 1196
BfmI	CTRYAG	2 cut(s)	679, 1080
BfrI	CTTAAG	1 cut(s)	395
BlpI	GCTNAGC	1 cut(s)	306
Bme1390I	CCNGG	4 cut(s)	76, 144, 181, 939
Bme18I	GGWCC	2 cut(s)	502, 935
BmgT120I	GGNCC	3 cut(s)	158, 502, 935
BmiI	GGNNCC	4 cut(s)	73, 160, 565, 936
BmrFI	CCNGG	4 cut(s)	76, 144, 181, 939
BmrI	ACTGGG	1 cut(s)	396
BmsI	GCATC	4 cut(s)	307, 454, 719, 894
BmuI	ACTGGG	1 cut(s)	396
BpmI	CTGGAG	1 cut(s)	549
Bpu1102I	GCTNAGC	1 cut(s)	306
Bpu14I	TTCGAA	1 cut(s)	1111
BpuMI	CCSGG	1 cut(s)	76
Bsa29I	ATCGAT	1 cut(s)	624
BsaHI	GRCGYC	1 cut(s)	878
BsaI	GGTCTC	1 cut(s)	284
BsaJI	CCNNGG	2 cut(s)	551, 747
BsaWI	WCCGGW	2 cut(s)	269, 283
Bsc4I	CCNNNNNNNGG	6 cut(s)	82, 149, 180, 248, 386, 959
Bse1I	ACTGG	3 cut(s)	391, 532, 895
Bse3DI	GCAATG	2 cut(s)	630, 804
BseBI	CCWGG	3 cut(s)	144, 181, 939
BseCI	ATCGAT	1 cut(s)	624
BseDI	CCNNGG	2 cut(s)	551, 747
BseGI	GGATG	2 cut(s)	469, 909
BseLI	CCNNNNNNNGG	6 cut(s)	82, 149, 180, 248, 386, 959
BseMI	GCAATG	2 cut(s)	630, 804
BseMII	CTCAG	1 cut(s)	1030
BseNI	ACTGG	3 cut(s)	391, 532, 895
BseRI	GAGGAG	1 cut(s)	596
Bsh1285I	CGRYCG	1 cut(s)	628
BshFI	GGCC	2 cut(s)	159, 436
BshNI	GGYRCC	2 cut(s)	71, 563
BshVI	ATCGAT	1 cut(s)	624
BsiEI	CGRYCG	1 cut(s)	628
BsiSI	CCGG	3 cut(s)	76, 270, 284
BslFI	GGGAC	1 cut(s)	368
BslI	CCNNNNNNNGG	6 cut(s)	82, 149, 180, 248, 386, 959
BsmAI	GTCTC	2 cut(s)	284, 644
BsmFI	GGGAC	1 cut(s)	368
BsnI	GGCC	2 cut(s)	159, 436
Bso31I	GGTCTC	1 cut(s)	284
Bsp119I	TTCGAA	1 cut(s)	1111
Bsp143I	GATC	4 cut(s)	90, 621, 625, 814
Bsp1720I	GCTNAGC	1 cut(s)	306
BspACI	CCGC	6 cut(s)	102, 201, 249, 452, 612, 664
BspANI	GGCC	2 cut(s)	159, 436
BspCNI	CTCAG	1 cut(s)	1029
BspDI	ATCGAT	1 cut(s)	624
BspLI	GGNNCC	4 cut(s)	73, 160, 565, 936
BspMAI	CTGCAG	2 cut(s)	683, 1084
BspPI	GGATC	2 cut(s)	98, 809
BspT104I	TTCGAA	1 cut(s)	1111
BspT107I	GGYRCC	2 cut(s)	71, 563
BspTI	CTTAAG	1 cut(s)	395
BspTNI	GGTCTC	1 cut(s)	284
BsrDI	GCAATG	2 cut(s)	630, 804
BsrI	ACTGG	3 cut(s)	391, 532, 895
BssECI	CCNNGG	2 cut(s)	551, 747
BssMI	GATC	4 cut(s)	90, 621, 625, 814
BssNI	GRCGYC	1 cut(s)	878
BssSI	CACGAG	1 cut(s)	636
BssT1I	CCWWGG	2 cut(s)	551, 747
Bst2BI	CACGAG	1 cut(s)	636
Bst2UI	CCWGG	3 cut(s)	144, 181, 939
Bst4CI	ACNGT	3 cut(s)	445, 825, 1043
Bst6I	CTCTTC	4 cut(s)	48, 282, 473, 1164
BstACI	GRCGYC	1 cut(s)	878
BstAFI	CTTAAG	1 cut(s)	395
BstBI	TTCGAA	1 cut(s)	1111
BstC8I	GCNNGC	1 cut(s)	438
BstDEI	CTNAG	3 cut(s)	306, 1016, 1140
BstF5I	GGATG	2 cut(s)	469, 909
BstKTI	GATC	4 cut(s)	93, 624, 628, 817
BstMAI	GTCTC	2 cut(s)	284, 644
BstMBI	GATC	4 cut(s)	90, 621, 625, 814
BstMCI	CGRYCG	1 cut(s)	628
BstMWI	GCNNNNNNNGC	1 cut(s)	641
BstNI	CCWGG	3 cut(s)	144, 181, 939
BstNSI	RCATGY	1 cut(s)	781
BstSCI	CCNGG	4 cut(s)	74, 142, 179, 937
BstSFI	CTRYAG	2 cut(s)	679, 1080
Bsu15I	ATCGAT	1 cut(s)	624
BsuRI	GGCC	2 cut(s)	159, 436
BsuTUI	ATCGAT	1 cut(s)	624
BtgZI	GCGATG	1 cut(s)	162
BtsCI	GGATG	2 cut(s)	469, 909
BtsI	GCAGTG	1 cut(s)	688
BtsIMutI	CAGTG	2 cut(s)	688, 1024
Cac8I	GCNNGC	1 cut(s)	438
CaiI	CAGNNNCTG	1 cut(s)	386
Cfr13I	GGNCC	3 cut(s)	158, 502, 935
ClaI	ATCGAT	1 cut(s)	624
CseI	GACGC	1 cut(s)	867
Csp6I	GTAC	2 cut(s)	346, 1039
CviAII	CATG	3 cut(s)	736, 778, 959
CviQI	GTAC	2 cut(s)	346, 1039
DdeI	CTNAG	3 cut(s)	306, 1016, 1140
DpnI	GATC	4 cut(s)	92, 623, 627, 816
DpnII	GATC	4 cut(s)	90, 621, 625, 814
DraI	TTTAAA	1 cut(s)	1035
Eam1104I	CTCTTC	4 cut(s)	48, 282, 473, 1164
EarI	CTCTTC	4 cut(s)	48, 282, 473, 1164
EciI	GGCGGA	1 cut(s)	264
Eco130I	CCWWGG	2 cut(s)	551, 747
Eco147I	AGGCCT	1 cut(s)	436
Eco31I	GGTCTC	1 cut(s)	284
Eco47I	GGWCC	2 cut(s)	502, 935
Eco57I	CTGAAG	3 cut(s)	19, 513, 1191
EcoO109I	RGGNCCY	1 cut(s)	935
EcoRII	CCWGG	3 cut(s)	142, 179, 937
EcoT14I	CCWWGG	2 cut(s)	551, 747
ErhI	CCWWGG	2 cut(s)	551, 747
FaeI	CATG	3 cut(s)	739, 781, 962
FalI	AAGNNNNNCTT	2 cut(s)	279, 311
FaqI	GGGAC	1 cut(s)	368
FatI	CATG	3 cut(s)	735, 777, 958
FokI	GGATG	2 cut(s)	476, 916
FspBI	CTAG	4 cut(s)	918, 1046, 1088, 1196
GsuI	CTGGAG	1 cut(s)	549
HaeIII	GGCC	2 cut(s)	159, 436
HapII	CCGG	3 cut(s)	76, 270, 284
HgaI	GACGC	1 cut(s)	867
Hin1I	GRCGYC	1 cut(s)	878
Hin1II	CATG	3 cut(s)	739, 781, 962
HindIII	AAGCTT	1 cut(s)	398
HinfI	GANTC	3 cut(s)	732, 929, 1190
HpaII	CCGG	3 cut(s)	76, 270, 284
HphI	GGTGA	2 cut(s)	1130, 1178
Hpy166II	GTNNAC	1 cut(s)	502
Hpy188I	TCNGA	4 cut(s)	316, 332, 660, 871
Hpy188III	TCNNGA	6 cut(s)	233, 404, 758, 812, 971, 1088
Hpy8I	GTNNAC	1 cut(s)	502
Hpy99I	CGWCG	2 cut(s)	179, 883
HpyAV	CCTTC	7 cut(s)	43, 123, 206, 401, 488, 661, 1212
HpyCH4III	ACNGT	3 cut(s)	445, 825, 1043
HpyCH4IV	ACGT	2 cut(s)	186, 762
HpyF10VI	GCNNNNNNNGC	1 cut(s)	641
HpyF3I	CTNAG	3 cut(s)	306, 1016, 1140
HpySE526I	ACGT	2 cut(s)	186, 762
Hsp92I	GRCGYC	1 cut(s)	878
Hsp92II	CATG	3 cut(s)	739, 781, 962
Kzo9I	GATC	4 cut(s)	90, 621, 625, 814
LmnI	GCTCC	4 cut(s)	104, 251, 332, 973
LweI	GCATC	4 cut(s)	307, 454, 719, 894
MaeI	CTAG	4 cut(s)	918, 1046, 1088, 1196
MaeII	ACGT	2 cut(s)	186, 762
MaeIII	GTNAC	3 cut(s)	390, 838, 1118
MalI	GATC	4 cut(s)	92, 623, 627, 816
MboI	GATC	4 cut(s)	90, 621, 625, 814
MboII	GAAGA	6 cut(s)	35, 299, 490, 1064, 1181, 1197
MfeI	CAATTG	1 cut(s)	336
MluCI	AATT	5 cut(s)	80, 336, 427, 1011, 1071
MmeI	TCCRAC	1 cut(s)	684
MseI	TTAA	3 cut(s)	396, 414, 1034
MslI	CAYNNNNRTG	1 cut(s)	780
MspA1I	CMGCKG	1 cut(s)	96
MspCI	CTTAAG	1 cut(s)	395
MspI	CCGG	3 cut(s)	76, 270, 284
MspR9I	CCNGG	4 cut(s)	76, 144, 181, 939
MunI	CAATTG	1 cut(s)	336
MvaI	CCWGG	3 cut(s)	144, 181, 939
MwoI	GCNNNNNNNGC	1 cut(s)	641
NciI	CCSGG	1 cut(s)	76
NdeII	GATC	4 cut(s)	90, 621, 625, 814
NlaIII	CATG	3 cut(s)	739, 781, 962
NlaIV	GGNNCC	4 cut(s)	73, 160, 565, 936
NmuCI	GTSAC	1 cut(s)	1118
NspI	RCATGY	1 cut(s)	781
NspV	TTCGAA	1 cut(s)	1111
PceI	AGGCCT	1 cut(s)	436
PciI	ACATGT	1 cut(s)	777
PcsI	WCGNNNNNNNCGW	2 cut(s)	183, 634
PfeI	GAWTC	3 cut(s)	732, 929, 1190
PflMI	CCANNNNNTGG	2 cut(s)	386, 959
PfoI	TCCNGGA	1 cut(s)	937
Ple19I	CGATCG	1 cut(s)	628
PpuMI	RGGWCCY	1 cut(s)	935
PscI	ACATGT	1 cut(s)	777
Psp1406I	AACGTT	1 cut(s)	186
Psp5II	RGGWCCY	1 cut(s)	935
Psp6I	CCWGG	3 cut(s)	142, 179, 937
PspGI	CCWGG	3 cut(s)	142, 179, 937
PspN4I	GGNNCC	4 cut(s)	73, 160, 565, 936
PspPI	GGNCC	3 cut(s)	158, 502, 935
PspPPI	RGGWCCY	1 cut(s)	935
PstI	CTGCAG	2 cut(s)	683, 1084
PstNI	CAGNNNCTG	1 cut(s)	386
PvuI	CGATCG	1 cut(s)	628
PvuII	CAGCTG	1 cut(s)	96
RsaI	GTAC	2 cut(s)	347, 1040
RsaNI	GTAC	2 cut(s)	346, 1039
RseI	CAYNNNNRTG	1 cut(s)	780
SaqAI	TTAA	3 cut(s)	396, 414, 1034
Sau3AI	GATC	4 cut(s)	90, 621, 625, 814
Sau96I	GGNCC	3 cut(s)	158, 502, 935
ScrFI	CCNGG	4 cut(s)	76, 144, 181, 939
SfaNI	GCATC	4 cut(s)	307, 454, 719, 894
SfcI	CTRYAG	2 cut(s)	679, 1080
SfuI	TTCGAA	1 cut(s)	1111
SinI	GGWCC	2 cut(s)	502, 935
SmiMI	CAYNNNNRTG	1 cut(s)	780
SmlI	CTYRAG	1 cut(s)	395
SmoI	CTYRAG	1 cut(s)	395
Sse9I	AATT	5 cut(s)	80, 336, 427, 1011, 1071
SseBI	AGGCCT	1 cut(s)	436
SsiI	CCGC	6 cut(s)	102, 201, 249, 452, 612, 664
SspMI	CTAG	4 cut(s)	918, 1046, 1088, 1196
StuI	AGGCCT	1 cut(s)	436
StyD4I	CCNGG	4 cut(s)	74, 142, 179, 937
StyI	CCWWGG	2 cut(s)	551, 747
TaaI	ACNGT	3 cut(s)	445, 825, 1043
TaiI	ACGT	2 cut(s)	189, 765
TaqI	TCGA	5 cut(s)	210, 403, 624, 881, 1111
TasI	AATT	5 cut(s)	80, 336, 427, 1011, 1071
TauI	GCSGC	2 cut(s)	203, 614
TfiI	GAWTC	3 cut(s)	732, 929, 1190
Tru1I	TTAA	3 cut(s)	396, 414, 1034
Tru9I	TTAA	3 cut(s)	396, 414, 1034
TscAI	CASTG	2 cut(s)	688, 1024
TseFI	GTSAC	1 cut(s)	1118
Tsp45I	GTSAC	1 cut(s)	1118
TspDTI	ATGAA	1 cut(s)	585
TspGWI	ACGGA	2 cut(s)	163, 614
TspRI	CASTG	2 cut(s)	688, 1024
Van91I	CCANNNNNTGG	2 cut(s)	386, 959
Vha464I	CTTAAG	1 cut(s)	395
VpaK11BI	GGWCC	2 cut(s)	502, 935
XapI	RAATTY	1 cut(s)	427
XbaI	TCTAGA	1 cut(s)	1087
XceI	RCATGY	1 cut(s)	781
XspI	CTAG	4 cut(s)	918, 1046, 1088, 1196

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.