Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0006646

Physical Location & Seq

Genomic Coordinates Reverse (-)

54447161 .. 54451877

Gene Structure 4717 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG367200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1215 bp

ATGGCTGCTTGTCTGCAACTCAACGCTAAGCCCTTCAACCCTCTTGTCTCTCCGAACCCCCTCTCCAAACACACCTTCAAGCTTGGCAGGGTCCGGTGCTCCGCCGCCTCACCCTCCAAACGCTACACCATCACTCTGCTTCCCGGCGATGGCATTGGCCCCGAAGTCATTTCAGTCGCCAAAAACGTCCTCAACCTCGCTGCCACCATCGAAGGGATTGAGTTTAAATATCAAGAAATGCCTGTGGGTGGAAATGCCTTGGATTTGACTGGAGTGCCGTTACCAGAAGAGACCCTTTCGGCAGCTAAGCAATCTGATGCAGTTCTGCTGGGAGCAATTGGGGGGTACAAATGGGATAAAAACGAAAAGCATTTAAAACCAGAAACTGGGTTGCTTAAGCTTCGGGAAGGTCTTAAAGTGTTTGCAAATTTGAGGCCAGCAGTTGTTTTACCACAGTTGGTCGATGCCTCTACTTTGAAGAGAGAGGTCGCCGAAGGGGTTGACCTTATGGTTATAAGAGAGCTCACTGGTGGTATATACTTTGGACAGCCAAGGGGTTTTGGCACTAATGAAAACGGTGAGGAGATTGGTTTCAATACCGAGGTGTATGCTGCCTATGAGATTGATCGTATTGCTCGAGTTGCATTTGAGACTGCTAGGAAGCGGCAGGGAAAGCTCTGTAGTGTTGACAAAGCAAATGTATTGGAGGCATCAATGTTTTGGAGAAAAAGAATCCTGGAAATAGCCTTGGATTATCCTGATGTTGAACTCTCACACATGTATGTTGATAATGCTGCAATGCAGCTTGTTCGTAATCCAAAACAGTTTGATACAATTGTAACAAACAACATATTTGGCGATATATTATCTGATGAGGCCTCAATGATTACTGGAAGTATTGGGATGCTCCCATCTGCTAGTCTTGGAGAATCAGGTCCTGGACTTTTTGAACCTATACATGGTTCTGCTCCTGATATTGCTGGACAGGATAAAGCAAACCCATTAGCAACGGTTCTCAGTGCTGCTATGCTTTTGAAGTACGGTCTTGGAGAAGAAAATGCTGCCAAGATAATTGAGGCAGCAGTCCTAGATACTTTGAACCGGGGGTTTCGAACAGTTGATATCTATTCGTCTGGAACGAAGTTGGTAGGATGCAAAGAAATGGGTGAAGAGGTATTGAAGTCAGTTGATTCTCTAGTTCCTTCTCCGGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006790 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009651 GO:0009941 GO:0009987 GO:0016143 GO:0016144 GO:0019748 GO:0019757 GO:0019758 GO:0019760 GO:0019761 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044249 GO:0044272 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0050896 GO:0071704 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00290 ko00660 ko00966 ko01100 ko01110 ko01210 ko01230 map00290 map00660 map00966 map01100 map01110 map01210 map01230

Pfam Domains

Protein Families

Iso_dh

Protein Analysis

404

Amino Acids

43.49

Weight (kDa)

5.4

Isoelectric Point (pI)

34.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Iso_dh	PF00180	43 - 392	2.3e-139	Isocitrate/isopropylmalate dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006646)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31180 AT1G31180 AT1G80560 AT5G14200 AT5G14200
fragaria_vesca	FvH4_2g04971
malus_domestica	MD17G1218700.v1.1
prunus_persica	Prupe.3G094300_v2.0.a1 Prupe.3G094300_v2.0.a1
pyrus_communis	pycom17g22270 pycom17g22330
rosa_chinensis	RchiOBHm_Chr2g0133781 RchiOBHm_Chr2g0133821
rosa_laevigata	RLG00000019364
rosa_multiflora	Rmu_sc0001782.1_g000049 Rmu_sc0001782.1_g000053 Rmu_sc0003682.1_g000003 Rmu_sc0004983.1_g000001
rosa_roxburghii	Rroxscaffold_2G00110790 Rroxscaffold_2G00110820
rosa_rugosa	Rorug02G0313900
rosa_samantha	Rh2AG367200 Rh2CG350300 Rh2CG350600 Rh2DG389700
rosa_wichuraiana	Rw2G029860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	515
AccB7I	CCANNNNNTGG	1 cut(s)	386
AciI	CCGC	3 cut(s)	102, 105, 664
AcsI	RAATTY	1 cut(s)	427
AfaI	GTAC	2 cut(s)	347, 1040
AfiI	CCNNNNNNNGG	5 cut(s)	149, 213, 248, 386, 959
AflII	CTTAAG	1 cut(s)	395
AflIII	ACRYGT	1 cut(s)	777
AgsI	TTSAA	9 cut(s)	37, 79, 478, 595, 767, 950, 1036, 1099, 1180
AjnI	CCWGG	2 cut(s)	735, 937
AjuI	GAANNNNNNNTTGG	2 cut(s)	59, 91
AloI	GAACNNNNNNTCC	2 cut(s)	47, 79
AluBI	AGCT	6 cut(s)	82, 305, 400, 523, 676, 805
AluI	AGCT	6 cut(s)	82, 305, 400, 523, 676, 805
Alw21I	GWGCWC	2 cut(s)	101, 525
Alw26I	GTCTC	3 cut(s)	52, 284, 644
AlwNI	CAGNNNCTG	2 cut(s)	386, 938
Ama87I	CYCGRG	1 cut(s)	636
AoxI	GGCC	3 cut(s)	157, 434, 876
ApeKI	GCWGC	9 cut(s)	5, 200, 302, 611, 794, 802, 1022, 1061, 1079
ApoI	RAATTY	1 cut(s)	427
AspS9I	GGNCC	3 cut(s)	91, 158, 935
AsuC2I	CCSGG	2 cut(s)	144, 1103
AsuHPI	GGTGA	3 cut(s)	102, 590, 1178
AsuII	TTCGAA	1 cut(s)	1111
AvaI	CYCGRG	1 cut(s)	636
AvaII	GGWCC	2 cut(s)	91, 935
BaeI	ACNNNNGTAYC	2 cut(s)	822, 855
BanII	GRGCYC	1 cut(s)	525
Bbv12I	GWGCWC	2 cut(s)	101, 525
BbvI	GCAGC	8 cut(s)	187, 314, 598, 781, 814, 1009, 1048, 1091
BccI	CCATC	4 cut(s)	137, 143, 215, 919
BceAI	ACGGC	1 cut(s)	262
BcgI	CGANNNNNNTGC	4 cut(s)	590, 624, 791, 825
BciT130I	CCWGG	2 cut(s)	737, 939
BcnI	CCSGG	2 cut(s)	144, 1103
BcoDI	GTCTC	3 cut(s)	52, 284, 644
BfaI	CTAG	4 cut(s)	657, 918, 1088, 1196
BfmI	CTRYAG	1 cut(s)	679
BfrI	CTTAAG	1 cut(s)	395
BlpI	GCTNAGC	2 cut(s)	27, 306
Bme1390I	CCNGG	4 cut(s)	144, 737, 939, 1103
Bme18I	GGWCC	2 cut(s)	91, 935
BmeT110I	CYCGRG	1 cut(s)	636
BmgT120I	GGNCC	3 cut(s)	91, 158, 935
BmiI	GGNNCC	2 cut(s)	92, 160
BmrFI	CCNGG	4 cut(s)	144, 737, 939, 1103
BmrI	ACTGGG	1 cut(s)	396
BmsI	GCATC	5 cut(s)	307, 454, 719, 894, 1142
BmuI	ACTGGG	1 cut(s)	396
BpmI	CTGGAG	1 cut(s)	291
Bpu1102I	GCTNAGC	2 cut(s)	27, 306
Bpu14I	TTCGAA	1 cut(s)	1111
BpuMI	CCSGG	2 cut(s)	144, 1103
BsaI	GGTCTC	1 cut(s)	284
BsaJI	CCNNGG	5 cut(s)	258, 551, 600, 747, 1102
BsaWI	WCCGGW	2 cut(s)	93, 1207
BsaXI	ACNNNNNCTCC	2 cut(s)	47, 77
Bsc4I	CCNNNNNNNGG	5 cut(s)	149, 213, 248, 386, 959
Bse1I	ACTGG	4 cut(s)	274, 391, 532, 895
Bse3DI	GCAATG	1 cut(s)	804
BseBI	CCWGG	2 cut(s)	737, 939
BseDI	CCNNGG	5 cut(s)	258, 551, 600, 747, 1102
BseGI	GGATG	2 cut(s)	909, 1157
BseLI	CCNNNNNNNGG	5 cut(s)	149, 213, 248, 386, 959
BseMI	GCAATG	1 cut(s)	804
BseMII	CTCAG	1 cut(s)	1030
BseNI	ACTGG	4 cut(s)	274, 391, 532, 895
BseRI	GAGGAG	1 cut(s)	596
BseXI	GCAGC	8 cut(s)	187, 314, 598, 781, 814, 1009, 1048, 1091
BseYI	CCCAGC	1 cut(s)	328
BshFI	GGCC	3 cut(s)	159, 436, 878
BsiHKAI	GWGCWC	2 cut(s)	101, 525
BsiHKCI	CYCGRG	1 cut(s)	636
BsiSI	CCGG	4 cut(s)	94, 144, 1102, 1208
BslI	CCNNNNNNNGG	5 cut(s)	149, 213, 248, 386, 959
BsmAI	GTCTC	3 cut(s)	52, 284, 644
BsnI	GGCC	3 cut(s)	159, 436, 878
Bso31I	GGTCTC	1 cut(s)	284
BsoBI	CYCGRG	1 cut(s)	636
Bsp119I	TTCGAA	1 cut(s)	1111
Bsp1286I	GDGCHC	2 cut(s)	101, 525
Bsp143I	GATC	1 cut(s)	625
Bsp1720I	GCTNAGC	2 cut(s)	27, 306
BspACI	CCGC	3 cut(s)	102, 105, 664
BspANI	GGCC	3 cut(s)	159, 436, 878
BspCNI	CTCAG	1 cut(s)	1029
BspLI	GGNNCC	2 cut(s)	92, 160
BspT104I	TTCGAA	1 cut(s)	1111
BspTI	CTTAAG	1 cut(s)	395
BspTNI	GGTCTC	1 cut(s)	284
BsrDI	GCAATG	1 cut(s)	804
BsrI	ACTGG	4 cut(s)	274, 391, 532, 895
BssECI	CCNNGG	5 cut(s)	258, 551, 600, 747, 1102
BssMI	GATC	1 cut(s)	625
BssT1I	CCWWGG	3 cut(s)	258, 551, 747
Bst2UI	CCWGG	2 cut(s)	737, 939
Bst4CI	ACNGT	6 cut(s)	456, 578, 825, 1012, 1043, 1117
Bst6I	CTCTTC	3 cut(s)	282, 473, 1164
BstAFI	CTTAAG	1 cut(s)	395
BstBI	TTCGAA	1 cut(s)	1111
BstC8I	GCNNGC	1 cut(s)	438
BstDEI	CTNAG	3 cut(s)	27, 306, 1016
BstF5I	GGATG	2 cut(s)	909, 1157
BstKTI	GATC	1 cut(s)	628
BstMAI	GTCTC	3 cut(s)	52, 284, 644
BstMBI	GATC	1 cut(s)	625
BstMWI	GCNNNNNNNGC	2 cut(s)	641, 673
BstNI	CCWGG	2 cut(s)	737, 939
BstNSI	RCATGY	1 cut(s)	781
BstSCI	CCNGG	4 cut(s)	142, 735, 937, 1101
BstSFI	CTRYAG	1 cut(s)	679
BstV1I	GCAGC	8 cut(s)	187, 314, 598, 781, 814, 1009, 1048, 1091
BsuRI	GGCC	3 cut(s)	159, 436, 878
BtgZI	GCGATG	1 cut(s)	162
BtsCI	GGATG	2 cut(s)	909, 1157
BtsIMutI	CAGTG	2 cut(s)	525, 1024
Cac8I	GCNNGC	1 cut(s)	438
CaiI	CAGNNNCTG	2 cut(s)	386, 938
Cfr13I	GGNCC	3 cut(s)	91, 158, 935
Csp6I	GTAC	2 cut(s)	346, 1039
CviAII	CATG	2 cut(s)	778, 959
CviQI	GTAC	2 cut(s)	346, 1039
DdeI	CTNAG	3 cut(s)	27, 306, 1016
DpnI	GATC	1 cut(s)	627
DpnII	GATC	1 cut(s)	625
DraI	TTTAAA	2 cut(s)	226, 375
Eam1104I	CTCTTC	3 cut(s)	282, 473, 1164
EarI	CTCTTC	3 cut(s)	282, 473, 1164
EciI	GGCGGA	1 cut(s)	91
Ecl136II	GAGCTC	1 cut(s)	523
Eco130I	CCWWGG	3 cut(s)	258, 551, 747
Eco147I	AGGCCT	1 cut(s)	878
Eco24I	GRGCYC	1 cut(s)	525
Eco31I	GGTCTC	1 cut(s)	284
Eco32I	GATATC	1 cut(s)	1123
Eco47I	GGWCC	2 cut(s)	91, 935
Eco53kI	GAGCTC	1 cut(s)	523
Eco88I	CYCGRG	1 cut(s)	636
EcoICRI	GAGCTC	1 cut(s)	523
EcoO109I	RGGNCCY	1 cut(s)	935
EcoRII	CCWGG	2 cut(s)	735, 937
EcoRV	GATATC	1 cut(s)	1123
EcoT14I	CCWWGG	3 cut(s)	258, 551, 747
EcoT38I	GRGCYC	1 cut(s)	525
ErhI	CCWWGG	3 cut(s)	258, 551, 747
FaeI	CATG	2 cut(s)	781, 962
FalI	AAGNNNNNCTT	2 cut(s)	279, 311
FatI	CATG	2 cut(s)	777, 958
FokI	GGATG	2 cut(s)	916, 1164
FriOI	GRGCYC	1 cut(s)	525
FspBI	CTAG	4 cut(s)	657, 918, 1088, 1196
GsaI	CCCAGC	1 cut(s)	332
GsuI	CTGGAG	1 cut(s)	291
HaeIII	GGCC	3 cut(s)	159, 436, 878
HapII	CCGG	4 cut(s)	94, 144, 1102, 1208
Hin1II	CATG	2 cut(s)	781, 962
HincII	GTYRAC	2 cut(s)	502, 688
HindII	GTYRAC	2 cut(s)	502, 688
HindIII	AAGCTT	2 cut(s)	80, 398
HinfI	GANTC	3 cut(s)	732, 929, 1190
HpaII	CCGG	4 cut(s)	94, 144, 1102, 1208
HphI	GGTGA	3 cut(s)	102, 590, 1178
Hpy166II	GTNNAC	2 cut(s)	502, 688
Hpy188I	TCNGA	3 cut(s)	54, 316, 871
Hpy188III	TCNNGA	5 cut(s)	233, 404, 758, 971, 1134
Hpy8I	GTNNAC	2 cut(s)	502, 688
HpyAV	CCTTC	6 cut(s)	43, 85, 206, 401, 488, 1212
HpyCH4III	ACNGT	6 cut(s)	456, 578, 825, 1012, 1043, 1117
HpyCH4IV	ACGT	1 cut(s)	186
HpyCH4V	TGCA	7 cut(s)	16, 320, 425, 644, 797, 802, 1155
HpyF10VI	GCNNNNNNNGC	2 cut(s)	641, 673
HpyF3I	CTNAG	3 cut(s)	27, 306, 1016
HpySE526I	ACGT	1 cut(s)	186
Hsp92II	CATG	2 cut(s)	781, 962
Kzo9I	GATC	1 cut(s)	625
LmnI	GCTCC	4 cut(s)	104, 332, 912, 973
Lsp1109I	GCAGC	8 cut(s)	187, 314, 598, 781, 814, 1009, 1048, 1091
LweI	GCATC	5 cut(s)	307, 454, 719, 894, 1142
MaeI	CTAG	4 cut(s)	657, 918, 1088, 1196
MaeII	ACGT	1 cut(s)	186
MaeIII	GTNAC	2 cut(s)	279, 838
MalI	GATC	1 cut(s)	627
MboI	GATC	1 cut(s)	625
MboII	GAAGA	4 cut(s)	299, 490, 1064, 1181
MfeI	CAATTG	2 cut(s)	336, 834
MhlI	GDGCHC	2 cut(s)	101, 525
MluCI	AATT	4 cut(s)	336, 427, 834, 1071
MseI	TTAA	4 cut(s)	225, 374, 396, 414
MslI	CAYNNNNRTG	1 cut(s)	780
MspCI	CTTAAG	1 cut(s)	395
MspI	CCGG	4 cut(s)	94, 144, 1102, 1208
MspR9I	CCNGG	4 cut(s)	144, 737, 939, 1103
MunI	CAATTG	2 cut(s)	336, 834
MvaI	CCWGG	2 cut(s)	737, 939
MwoI	GCNNNNNNNGC	2 cut(s)	641, 673
NciI	CCSGG	2 cut(s)	144, 1103
NdeII	GATC	1 cut(s)	625
NlaIII	CATG	2 cut(s)	781, 962
NlaIV	GGNNCC	2 cut(s)	92, 160
NspI	RCATGY	1 cut(s)	781
NspV	TTCGAA	1 cut(s)	1111
PaeR7I	CTCGAG	1 cut(s)	636
PceI	AGGCCT	1 cut(s)	878
PciI	ACATGT	1 cut(s)	777
PcsI	WCGNNNNNNNCGW	3 cut(s)	183, 634, 1136
PfeI	GAWTC	3 cut(s)	732, 929, 1190
PflMI	CCANNNNNTGG	1 cut(s)	386
PfoI	TCCNGGA	2 cut(s)	735, 937
PpuMI	RGGWCCY	1 cut(s)	935
PscI	ACATGT	1 cut(s)	777
PsiI	TTATAA	1 cut(s)	515
Psp124BI	GAGCTC	1 cut(s)	525
Psp5II	RGGWCCY	1 cut(s)	935
Psp6I	CCWGG	2 cut(s)	735, 937
PspFI	CCCAGC	1 cut(s)	328
PspGI	CCWGG	2 cut(s)	735, 937
PspN4I	GGNNCC	2 cut(s)	92, 160
PspPI	GGNCC	3 cut(s)	91, 158, 935
PspPPI	RGGWCCY	1 cut(s)	935
PspXI	VCTCGAGB	1 cut(s)	636
PstNI	CAGNNNCTG	2 cut(s)	386, 938
RsaI	GTAC	2 cut(s)	347, 1040
RsaNI	GTAC	2 cut(s)	346, 1039
RseI	CAYNNNNRTG	1 cut(s)	780
SacI	GAGCTC	1 cut(s)	525
SaqAI	TTAA	4 cut(s)	225, 374, 396, 414
Sau3AI	GATC	1 cut(s)	625
Sau96I	GGNCC	3 cut(s)	91, 158, 935
ScrFI	CCNGG	4 cut(s)	144, 737, 939, 1103
SduI	GDGCHC	2 cut(s)	101, 525
SfaNI	GCATC	5 cut(s)	307, 454, 719, 894, 1142
SfcI	CTRYAG	1 cut(s)	679
Sfr274I	CTCGAG	1 cut(s)	636
SfuI	TTCGAA	1 cut(s)	1111
SinI	GGWCC	2 cut(s)	91, 935
SlaI	CTCGAG	1 cut(s)	636
SmiMI	CAYNNNNRTG	1 cut(s)	780
SmlI	CTYRAG	2 cut(s)	395, 636
SmoI	CTYRAG	2 cut(s)	395, 636
Sse9I	AATT	4 cut(s)	336, 427, 834, 1071
SseBI	AGGCCT	1 cut(s)	878
SsiI	CCGC	3 cut(s)	102, 105, 664
SspMI	CTAG	4 cut(s)	657, 918, 1088, 1196
SstI	GAGCTC	1 cut(s)	525
StuI	AGGCCT	1 cut(s)	878
StyD4I	CCNGG	4 cut(s)	142, 735, 937, 1101
StyI	CCWWGG	3 cut(s)	258, 551, 747
TaaI	ACNGT	6 cut(s)	456, 578, 825, 1012, 1043, 1117
TaiI	ACGT	1 cut(s)	189
TaqI	TCGA	4 cut(s)	210, 462, 637, 1111
TasI	AATT	4 cut(s)	336, 427, 834, 1071
TauI	GCSGC	2 cut(s)	107, 667
TfiI	GAWTC	3 cut(s)	732, 929, 1190
Tru1I	TTAA	4 cut(s)	225, 374, 396, 414
Tru9I	TTAA	4 cut(s)	225, 374, 396, 414
TscAI	CASTG	2 cut(s)	532, 1024
TseI	GCWGC	9 cut(s)	5, 200, 302, 611, 794, 802, 1022, 1061, 1079
TspDTI	ATGAA	1 cut(s)	585
TspRI	CASTG	2 cut(s)	532, 1024
Van91I	CCANNNNNTGG	1 cut(s)	386
Vha464I	CTTAAG	1 cut(s)	395
VpaK11BI	GGWCC	2 cut(s)	91, 935
XapI	RAATTY	1 cut(s)	427
XceI	RCATGY	1 cut(s)	781
XhoI	CTCGAG	1 cut(s)	636
XspI	CTAG	4 cut(s)	657, 918, 1088, 1196

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.