AT5G14200

Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Forward (+)
4576123 .. 4578402
2280 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G14200.1

Sequence Viewer

Length: 1230 bp
ATGGCGGCGTTTTTGCAAACGAACATCAGTCTGAATGCGATCAAGATCGTCCCGGGGAAATACAGTTCTCTCACCGATCATCAGTTTCGTGCGCCGTATCGAATTAGGTGCGCCGCCGCTTCACCTGGGAAAAAACGGTATAACATCGCTCTGCTTCCCGGAGACGGTATCGGTCCAGAAGTTATCTCTGTTGCTAAGAATGTGCTTCAGAAAGCTGGATCTCTCGAAGGACTGGAGTTTGATTTCAAGGAGATGCCTGTCGGAGGAGCAGCCTTGGATTTGGTTGGAGTTCCATTGCCGGAGGAAACTTTCACGGCTGCAAAACTATCTGATGCCATTCTTCTTGGAGCTATTGGAGGGTACAAATGGGACAAGAATGAGAAACATCTGAGACCTGAGATGGCTCTGTTTTACCTTAGAAGAGATCTCAAAGTCTTTGCTAATTTGAGACCTGCTACAGTTTTGCCACAGCTAGTTGATGCTTCCACACTGAAGAAAGAAGTAGCAGAAGGTGTTGATATGATGATTGTTAGGGAGCTCACAGGAGGTATTTACTTTGGAGAGCCAAGAGGCATTACGATCAATGAAAATGGCGAAGAAGTCGGCGTTAGTACAGAGATCTACGCTGCTCACGAGATTGACAGAATTGCTCGTGTAGCATTCGAGACTGCTAGGAAAAGGCGTGGCAAACTTTGTTCTGTTGACAAAGCCAATGTGTTGGATGCATCAATATTGTGGAGGAAAAGAGTAACAGCTTTAGCCTCTGAATATCCAGATGTTGAACTATCACATATGTATGTCGATAATGCTGCAATGCAGCTTATTCGTGACCCGAAACAGTTTGACACAATCGTTACCAATAACATTTTTGGTGATATATTGTCTGATGAAGCTTCAATGATCACTGGAAGCATTGGAATGCTTCCATCTGCTAGTCTCGGTGAATCGGGACCTGGACTCTTTGAACCTATACATGGTTCAGCACCAGATATAGCTGGACAAGACAAGGCAAACCCATTGGCCACCATTCTCAGCGCGGCGATGCTTCTGAAGTATGGACTTGGAGAAGAAAAGGCTGCAAAGAGGATTGAAGACGCTGTCGTGGATGCTCTGAACAAAGGGTTCAGAACCGGAGACATCTACTCCCCTGGAAATAAACTGGTGGGATGCAAGGAAATGGGTGAGGAGGTTCTCAAATCAGTGGAATCCAAAGTTCCAGCTACTGTTTAA

Protein Analysis

409

Amino Acids

44.16

Weight (kDa)

5.75

Isoelectric Point (pI)

37.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Iso_dh PF00180 48 - 397 1.6e-143 Isocitrate/isopropylmalate dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 460
AccII CGCG 1 cut(s) 1037
AciI CCGC 4 cut(s) 5, 114, 117, 1037
AclWI GGATC 1 cut(s) 226
AcoI YGGCCR 1 cut(s) 1020
AcuI CTGAAG 3 cut(s) 191, 512, 1070
AfaI GTAC 2 cut(s) 362, 613
AfiI CCNNNNNNNGG 3 cut(s) 164, 263, 974
AgsI TTSAA 5 cut(s) 247, 782, 897, 965, 1091
AjnI CCWGG 3 cut(s) 124, 952, 1147
AloI GAACNNNNNNTCC 2 cut(s) 49, 81
AluBI AGCT 9 cut(s) 215, 350, 472, 538, 755, 820, 893, 995, 1220
AluI AGCT 9 cut(s) 215, 350, 472, 538, 755, 820, 893, 995, 1220
Alw21I GWGCWC 1 cut(s) 540
Alw26I GTCTC 6 cut(s) 156, 385, 442, 659, 941, 1128
AlwI GGATC 1 cut(s) 226
AlwNI CAGNNNCTG 1 cut(s) 1223
Ama87I CYCGRG 1 cut(s) 52
AoxI GGCC 1 cut(s) 1020
ApeKI GCWGC 6 cut(s) 269, 317, 626, 809, 817, 1076
AspLEI GCGC 3 cut(s) 94, 113, 1037
AspS9I GGNCC 2 cut(s) 173, 950
AsuC2I CCSGG 3 cut(s) 53, 54, 159
AsuHPI GGTGA 5 cut(s) 64, 114, 884, 953, 1193
AvaI CYCGRG 1 cut(s) 52
AvaII GGWCC 2 cut(s) 173, 950
BalI TGGCCA 1 cut(s) 1022
BanII GRGCYC 1 cut(s) 540
BauI CACGAG 2 cut(s) 632, 651
BbsI GAAGAC 1 cut(s) 1098
Bbv12I GWGCWC 1 cut(s) 540
BbvI GCAGC 6 cut(s) 281, 304, 613, 796, 829, 1063
BccI CCATC 2 cut(s) 394, 934
BceAI ACGGC 2 cut(s) 79, 330
BcgI CGANNNNNNTGC 6 cut(s) 90, 124, 791, 806, 825, 840
BciT130I CCWGG 3 cut(s) 126, 954, 1149
BclI TGATCA 1 cut(s) 900
BcnI CCSGG 3 cut(s) 53, 54, 159
BcoDI GTCTC 6 cut(s) 156, 385, 442, 659, 941, 1128
BfaI CTAG 3 cut(s) 473, 672, 933
BfmI CTRYAG 1 cut(s) 456
BfuAI ACCTGC 1 cut(s) 460
BglII AGATCT 2 cut(s) 424, 618
Bme1390I CCNGG 6 cut(s) 53, 54, 126, 159, 954, 1149
Bme18I GGWCC 2 cut(s) 173, 950
BmeT110I CYCGRG 1 cut(s) 52
BmgT120I GGNCC 2 cut(s) 173, 950
BmiI GGNNCC 1 cut(s) 951
BmrFI CCNGG 6 cut(s) 53, 54, 126, 159, 954, 1149
BmsI GCATC 8 cut(s) 243, 322, 469, 712, 734, 1032, 1096, 1157
BpiI GAAGAC 1 cut(s) 1098
BpmI CTGGAG 1 cut(s) 254
BpuMI CCSGG 3 cut(s) 53, 54, 159
BsaBI GATNNNNATC 1 cut(s) 44
BsaI GGTCTC 2 cut(s) 385, 442
BsaJI CCNNGG 5 cut(s) 52, 53, 125, 273, 1147
BsaWI WCCGGW 1 cut(s) 1130
BsaXI ACNNNNNCTCC 2 cut(s) 1127, 1157
Bsc4I CCNNNNNNNGG 3 cut(s) 164, 263, 974
Bse1I ACTGG 3 cut(s) 237, 910, 1164
Bse3DI GCAATG 2 cut(s) 293, 819
Bse8I GATNNNNATC 1 cut(s) 44
BseBI CCWGG 3 cut(s) 126, 954, 1149
BseDI CCNNGG 5 cut(s) 52, 53, 125, 273, 1147
BseGI GGATG 3 cut(s) 727, 1111, 1172
BseJI GATNNNNATC 1 cut(s) 44
BseLI CCNNNNNNNGG 3 cut(s) 164, 263, 974
BseMI GCAATG 2 cut(s) 293, 819
BseMII CTCAG 3 cut(s) 380, 387, 1045
BseNI ACTGG 3 cut(s) 237, 910, 1164
BseRI GAGGAG 2 cut(s) 279, 1199
BseXI GCAGC 6 cut(s) 281, 304, 613, 796, 829, 1063
Bsh1236I CGCG 1 cut(s) 1037
BshFI GGCC 1 cut(s) 1022
BsiHKAI GWGCWC 1 cut(s) 540
BsiHKCI CYCGRG 1 cut(s) 52
BsiSI CCGG 4 cut(s) 53, 159, 299, 1131
BslFI GGGAC 3 cut(s) 35, 383, 963
BslI CCNNNNNNNGG 3 cut(s) 164, 263, 974
BsmAI GTCTC 6 cut(s) 156, 385, 442, 659, 941, 1128
BsmBI CGTCTC 1 cut(s) 156
BsmFI GGGAC 3 cut(s) 35, 383, 963
BsmI GAATGC 3 cut(s) 40, 659, 924
BsnI GGCC 1 cut(s) 1022
Bso31I GGTCTC 2 cut(s) 385, 442
BsoBI CYCGRG 1 cut(s) 52
Bsp1286I GDGCHC 1 cut(s) 540
Bsp143I GATC 8 cut(s) 39, 45, 76, 218, 424, 579, 618, 900
BspACI CCGC 4 cut(s) 5, 114, 117, 1037
BspANI GGCC 1 cut(s) 1022
BspCNI CTCAG 3 cut(s) 381, 388, 1044
BspFNI CGCG 1 cut(s) 1037
BspLI GGNNCC 1 cut(s) 951
BspMI ACCTGC 1 cut(s) 460
BspPI GGATC 1 cut(s) 226
BspTNI GGTCTC 2 cut(s) 385, 442
BsrDI GCAATG 2 cut(s) 293, 819
BsrI ACTGG 3 cut(s) 237, 910, 1164
BssECI CCNNGG 5 cut(s) 52, 53, 125, 273, 1147
BssMI GATC 8 cut(s) 39, 45, 76, 218, 424, 579, 618, 900
BssSI CACGAG 2 cut(s) 632, 651
BssT1I CCWWGG 1 cut(s) 273
Bst2BI CACGAG 2 cut(s) 632, 651
Bst2UI CCWGG 3 cut(s) 126, 954, 1149
Bst4CI ACNGT 6 cut(s) 65, 138, 167, 460, 840, 1225
Bst6I CTCTTC 1 cut(s) 415
BstDEI CTNAG 5 cut(s) 195, 389, 396, 416, 1031
BstENI CCTNNNNNAGG 1 cut(s) 261
BstF5I GGATG 3 cut(s) 727, 1111, 1172
BstFNI CGCG 1 cut(s) 1037
BstHHI GCGC 3 cut(s) 94, 113, 1037
BstKTI GATC 8 cut(s) 42, 48, 79, 221, 427, 582, 621, 903
BstMAI GTCTC 6 cut(s) 156, 385, 442, 659, 941, 1128
BstMBI GATC 8 cut(s) 39, 45, 76, 218, 424, 579, 618, 900
BstMWI GCNNNNNNNGC 1 cut(s) 656
BstNI CCWGG 3 cut(s) 126, 954, 1149
BstSCI CCNGG 6 cut(s) 51, 52, 124, 157, 952, 1147
BstSFI CTRYAG 1 cut(s) 456
BstUI CGCG 1 cut(s) 1037
BstV1I GCAGC 6 cut(s) 281, 304, 613, 796, 829, 1063
BstV2I GAAGAC 1 cut(s) 1098
BstX2I RGATCY 3 cut(s) 218, 424, 618
BstXI CCANNNNNNTGG 1 cut(s) 718
BstYI RGATCY 3 cut(s) 218, 424, 618
BsuRI GGCC 1 cut(s) 1022
BtgZI GCGATG 2 cut(s) 130, 1055
BtsCI GGATG 3 cut(s) 727, 1111, 1172
BtsIMutI CAGTG 3 cut(s) 488, 903, 1206
BveI ACCTGC 1 cut(s) 460
CaiI CAGNNNCTG 1 cut(s) 1223
CfoI GCGC 3 cut(s) 94, 113, 1037
Cfr13I GGNCC 2 cut(s) 173, 950
Cfr9I CCCGGG 1 cut(s) 52
CseI GACGC 1 cut(s) 1103
Csp6I GTAC 2 cut(s) 361, 612
CviAII CATG 1 cut(s) 974
CviQI GTAC 2 cut(s) 361, 612
DdeI CTNAG 5 cut(s) 195, 389, 396, 416, 1031
DpnI GATC 8 cut(s) 41, 47, 78, 220, 426, 581, 620, 902
DpnII GATC 8 cut(s) 39, 45, 76, 218, 424, 579, 618, 900
EaeI YGGCCR 1 cut(s) 1020
Eam1104I CTCTTC 1 cut(s) 415
EarI CTCTTC 1 cut(s) 415
Ecl136II GAGCTC 1 cut(s) 538
Eco130I CCWWGG 1 cut(s) 273
Eco24I GRGCYC 1 cut(s) 540
Eco31I GGTCTC 2 cut(s) 385, 442
Eco47I GGWCC 2 cut(s) 173, 950
Eco53kI GAGCTC 1 cut(s) 538
Eco57I CTGAAG 3 cut(s) 191, 512, 1070
Eco88I CYCGRG 1 cut(s) 52
EcoICRI GAGCTC 1 cut(s) 538
EcoNI CCTNNNNNAGG 1 cut(s) 261
EcoO109I RGGNCCY 1 cut(s) 950
EcoRII CCWGG 3 cut(s) 124, 952, 1147
EcoT14I CCWWGG 1 cut(s) 273
EcoT22I ATGCAT 1 cut(s) 727
EcoT38I GRGCYC 1 cut(s) 540
ErhI CCWWGG 1 cut(s) 273
Esp3I CGTCTC 1 cut(s) 156
FaeI CATG 1 cut(s) 977
FaqI GGGAC 3 cut(s) 35, 383, 963
FatI CATG 1 cut(s) 973
FauNDI CATATG 1 cut(s) 792
FbaI TGATCA 1 cut(s) 900
FokI GGATG 3 cut(s) 734, 1118, 1179
FriOI GRGCYC 1 cut(s) 540
FspBI CTAG 3 cut(s) 473, 672, 933
GlaI GCGC 3 cut(s) 93, 112, 1036
GsuI CTGGAG 1 cut(s) 254
HaeIII GGCC 1 cut(s) 1022
HapII CCGG 4 cut(s) 53, 159, 299, 1131
HgaI GACGC 1 cut(s) 1103
HhaI GCGC 3 cut(s) 94, 113, 1037
Hin1II CATG 1 cut(s) 977
Hin6I GCGC 3 cut(s) 92, 111, 1035
HinP1I GCGC 3 cut(s) 92, 111, 1035
HincII GTYRAC 1 cut(s) 703
HindII GTYRAC 1 cut(s) 703
HindIII AAGCTT 1 cut(s) 891
HinfI GANTC 3 cut(s) 944, 957, 1205
HpaII CCGG 4 cut(s) 53, 159, 299, 1131
HphI GGTGA 5 cut(s) 64, 114, 884, 953, 1193
Hpy166II GTNNAC 1 cut(s) 703
Hpy188III TCNNGA 8 cut(s) 43, 176, 224, 632, 664, 773, 827, 948
Hpy8I GTNNAC 1 cut(s) 703
HpyAV CCTTC 2 cut(s) 221, 503
HpyCH4III ACNGT 6 cut(s) 65, 138, 167, 460, 840, 1225
HpyCH4V TGCA 7 cut(s) 16, 320, 725, 812, 817, 1079, 1170
HpyF10VI GCNNNNNNNGC 1 cut(s) 656
HpyF3I CTNAG 5 cut(s) 195, 389, 396, 416, 1031
Hsp92II CATG 1 cut(s) 977
HspAI GCGC 3 cut(s) 92, 111, 1035
Ksp22I TGATCA 1 cut(s) 900
Kzo9I GATC 8 cut(s) 39, 45, 76, 218, 424, 579, 618, 900
LmnI GCTCC 3 cut(s) 266, 347, 535
Lsp1109I GCAGC 6 cut(s) 281, 304, 613, 796, 829, 1063
LweI GCATC 8 cut(s) 243, 322, 469, 712, 734, 1032, 1096, 1157
MaeI CTAG 3 cut(s) 473, 672, 933
MaeIII GTNAC 3 cut(s) 748, 827, 853
MalI GATC 8 cut(s) 41, 47, 78, 220, 426, 581, 620, 902
MboI GATC 8 cut(s) 39, 45, 76, 218, 424, 579, 618, 900
MboII GAAGA 6 cut(s) 332, 432, 505, 608, 1079, 1103
MflI RGATCY 3 cut(s) 218, 424, 618
MhlI GDGCHC 1 cut(s) 540
MlsI TGGCCA 1 cut(s) 1022
MluCI AATT 3 cut(s) 102, 442, 645
MluNI TGGCCA 1 cut(s) 1022
MlyI GAGTC 1 cut(s) 951
MmeI TCCRAC 3 cut(s) 241, 265, 699
Mox20I TGGCCA 1 cut(s) 1022
Mph1103I ATGCAT 1 cut(s) 727
MscI TGGCCA 1 cut(s) 1022
MseI TTAA 1 cut(s) 1228
MslI CAYNNNNRTG 2 cut(s) 795, 917
Msp20I TGGCCA 1 cut(s) 1022
MspI CCGG 4 cut(s) 53, 159, 299, 1131
MspR9I CCNGG 6 cut(s) 53, 54, 126, 159, 954, 1149
Mva1269I GAATGC 3 cut(s) 40, 659, 924
MvaI CCWGG 3 cut(s) 126, 954, 1149
MvnI CGCG 1 cut(s) 1037
MwoI GCNNNNNNNGC 1 cut(s) 656
NciI CCSGG 3 cut(s) 53, 54, 159
NdeI CATATG 1 cut(s) 792
NdeII GATC 8 cut(s) 39, 45, 76, 218, 424, 579, 618, 900
NlaIII CATG 1 cut(s) 977
NlaIV GGNNCC 1 cut(s) 951
NmuCI GTSAC 1 cut(s) 827
NsiI ATGCAT 1 cut(s) 727
PcsI WCGNNNNNNNCGW 1 cut(s) 630
PctI GAATGC 3 cut(s) 40, 659, 924
PfeI GAWTC 2 cut(s) 944, 1205
PflFI GACNNNGTC 1 cut(s) 1097
PfoI TCCNGGA 1 cut(s) 157
PleI GAGTC 1 cut(s) 951
PpsI GAGTC 1 cut(s) 951
PpuMI RGGWCCY 1 cut(s) 950
Psp124BI GAGCTC 1 cut(s) 540
Psp5II RGGWCCY 1 cut(s) 950
Psp6I CCWGG 3 cut(s) 124, 952, 1147
PspGI CCWGG 3 cut(s) 124, 952, 1147
PspN4I GGNNCC 1 cut(s) 951
PspPI GGNCC 2 cut(s) 173, 950
PspPPI RGGWCCY 1 cut(s) 950
PstNI CAGNNNCTG 1 cut(s) 1223
PsuI RGATCY 3 cut(s) 218, 424, 618
PsyI GACNNNGTC 1 cut(s) 1097
RsaI GTAC 2 cut(s) 362, 613
RsaNI GTAC 2 cut(s) 361, 612
RseI CAYNNNNRTG 2 cut(s) 795, 917
SacI GAGCTC 1 cut(s) 540
SaqAI TTAA 1 cut(s) 1228
Sau3AI GATC 8 cut(s) 39, 45, 76, 218, 424, 579, 618, 900
Sau96I GGNCC 2 cut(s) 173, 950
SchI GAGTC 1 cut(s) 951
ScrFI CCNGG 6 cut(s) 53, 54, 126, 159, 954, 1149
SduI GDGCHC 1 cut(s) 540
SfaNI GCATC 8 cut(s) 243, 322, 469, 712, 734, 1032, 1096, 1157
SfcI CTRYAG 1 cut(s) 456
SinI GGWCC 2 cut(s) 173, 950
SmaI CCCGGG 1 cut(s) 54
SmiMI CAYNNNNRTG 2 cut(s) 795, 917
Sse9I AATT 3 cut(s) 102, 442, 645
SsiI CCGC 4 cut(s) 5, 114, 117, 1037
SspI AATATT 1 cut(s) 732
SspMI CTAG 3 cut(s) 473, 672, 933
SstI GAGCTC 1 cut(s) 540
StyD4I CCNGG 6 cut(s) 51, 52, 124, 157, 952, 1147
StyI CCWWGG 1 cut(s) 273
TaaI ACNGT 6 cut(s) 65, 138, 167, 460, 840, 1225
TaqI TCGA 4 cut(s) 100, 225, 663, 801
TaqII GACCGA 1 cut(s) 161
TasI AATT 3 cut(s) 102, 442, 645
TatI WGTACW 1 cut(s) 611
TauI GCSGC 4 cut(s) 8, 116, 119, 1040
TfiI GAWTC 2 cut(s) 944, 1205
Tru1I TTAA 1 cut(s) 1228
Tru9I TTAA 1 cut(s) 1228
TscAI CASTG 3 cut(s) 495, 910, 1206
TseFI GTSAC 1 cut(s) 827
TseI GCWGC 6 cut(s) 269, 317, 626, 809, 817, 1076
Tsp45I GTSAC 1 cut(s) 827
TspDTI ATGAA 2 cut(s) 600, 903
TspMI CCCGGG 1 cut(s) 52
TspRI CASTG 3 cut(s) 495, 910, 1206
Tth111I GACNNNGTC 1 cut(s) 1097
VpaK11BI GGWCC 2 cut(s) 173, 950
XagI CCTNNNNNAGG 1 cut(s) 261
XmaI CCCGGG 1 cut(s) 52
XspI CTAG 3 cut(s) 473, 672, 933
Zsp2I ATGCAT 1 cut(s) 727
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.