Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0006646

Physical Location & Seq

Genomic Coordinates Reverse (-)

50877971 .. 50882733

Gene Structure 4763 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000019364

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1215 bp

ATGGCTGCTTGTCTGCAACTCAACGCTAAGCCCTTCACCCCTCTTGTCTCTCCGAACCCCCTCTCCAAACACACCTTCAAGCTTGGCAGGGTCCGGTGCTCCGCTGCCTCACCCTCCAAACGCTACACCATCACTCTACTTCCCGGCGATGGCATTGGCCCCGAAGTCATTTCAGTCGCCAAAAAGGTCCTCAACCTCGCTGCCACCATCGAAGGGATTGAGTTTAAATATCAAGATATGCCTGTGGGTGGAAATGCCTTGGATTTGACTGGAGTGCCGTTACCAGAAGAGACCCTTTCGGCAGCTAAGCAATCCGATGCAGTTCTGCTGGGAGCAATTGGGGGGTACAAATGGGATAAAAATGAAAAGCATTTAAAACCAGAAACTGGGTTGCTTAAGCTTCGGGAAGGTCTTAAAGTGTTTGCAAATTTGAGGCCAGCAGTTGTTTTACCGCAGTTGGTCGATGCCTCTACTTTGAAGAGAGAGGTCGCTGAAGGGGTTGACCTTATGGTTATAAGAGAGCTCACTGGTGGTATATACTTTGGACAACCAAGGGGTTTTGGCACTAATGAAAACGGTGAGGAGATTGGTTTCAATACCGAGGTGTATGCTGCATATGAGGTTGATCGTATTGCTCGAGTTGCATTTGAGACTGCTAGGAAGCGGCAGGGAAAGCTCTGTAGTGTTGACAAAGCAAATGTATTGGAGGCATCAATGTTTTGGAGAAAAAGAATCCTGGAAATAGCCTTGGATTATCCTGATGTTGAACTCTCACACATGTATGTTGATAATGCTGCAATGCAGCTTGTTCGTAATCCAAAACAGTTTGATACAATTGTAACAAACAACATATTTGGCGATATATTATCTGATGAGGCTTCAATGATTACCGGAAGTATTGGGATGCTTCCATCTGCTAGTCTTGGAGAATCAGGTCCTGGACTTTTTGAACCTATACATGGTTCTGCTCCTGATATTGCTGGACAGGATAAGGCAAACCCATTAGCAACGGTTCTCAGTGCTGCTATGCTTTTGAAGTACGGTCTTGGAGAAGAAAATGCTGCCAAGAGAATTGAGGCAGCAGTCCTTGATACTTTGAACCGGGGGTTTCGAACGGTTGATATCTATTCTTCCGGAACGAAGTTGGTAGGATGCAAAGAAATGGGTGAAGAGGTATTGAAGTCAGTTGATTCTCTAGTTCCTTCTCCGGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006790 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009651 GO:0009941 GO:0009987 GO:0016143 GO:0016144 GO:0019748 GO:0019757 GO:0019758 GO:0019760 GO:0019761 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044249 GO:0044272 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0050896 GO:0071704 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00290 ko00660 ko00966 ko01100 ko01110 ko01210 ko01230 map00290 map00660 map00966 map01100 map01110 map01210 map01230

Pfam Domains

Protein Families

Iso_dh

Protein Analysis

405

Amino Acids

43.5

Weight (kDa)

5.64

Isoelectric Point (pI)

34.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Iso_dh	PF00180	43 - 392	6.6e-140	Isocitrate/isopropylmalate dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006646)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31180 AT1G31180 AT1G80560 AT5G14200 AT5G14200
fragaria_vesca	FvH4_2g04971
malus_domestica	MD17G1218700.v1.1
prunus_persica	Prupe.3G094300_v2.0.a1 Prupe.3G094300_v2.0.a1
pyrus_communis	pycom17g22270 pycom17g22330
rosa_chinensis	RchiOBHm_Chr2g0133781 RchiOBHm_Chr2g0133821
rosa_laevigata	RLG00000019364
rosa_multiflora	Rmu_sc0001782.1_g000049 Rmu_sc0001782.1_g000053 Rmu_sc0003682.1_g000003 Rmu_sc0004983.1_g000001
rosa_roxburghii	Rroxscaffold_2G00110790 Rroxscaffold_2G00110820
rosa_rugosa	Rorug02G0313900
rosa_samantha	Rh2AG367200 Rh2CG350300 Rh2CG350600 Rh2DG389700
rosa_wichuraiana	Rw2G029860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	515
AccB7I	CCANNNNNTGG	1 cut(s)	386
AccIII	TCCGGA	1 cut(s)	1133
AciI	CCGC	3 cut(s)	102, 452, 664
AcsI	RAATTY	1 cut(s)	427
AcuI	CTGAAG	1 cut(s)	513
AfaI	GTAC	2 cut(s)	347, 1040
AfiI	CCNNNNNNNGG	5 cut(s)	149, 213, 248, 386, 959
AflII	CTTAAG	1 cut(s)	395
AflIII	ACRYGT	1 cut(s)	777
AgsI	TTSAA	9 cut(s)	79, 478, 595, 767, 882, 950, 1036, 1099, 1180
AjnI	CCWGG	2 cut(s)	735, 937
AjuI	GAANNNNNNNTTGG	2 cut(s)	59, 91
AloI	GAACNNNNNNTCC	2 cut(s)	47, 79
AluBI	AGCT	6 cut(s)	82, 305, 400, 523, 676, 805
AluI	AGCT	6 cut(s)	82, 305, 400, 523, 676, 805
Alw21I	GWGCWC	2 cut(s)	101, 525
Alw26I	GTCTC	3 cut(s)	52, 284, 644
AlwNI	CAGNNNCTG	2 cut(s)	386, 938
Ama87I	CYCGRG	1 cut(s)	636
Aor13HI	TCCGGA	1 cut(s)	1133
AoxI	GGCC	2 cut(s)	157, 434
ApoI	RAATTY	1 cut(s)	427
AspS9I	GGNCC	4 cut(s)	91, 158, 187, 935
AsuC2I	CCSGG	2 cut(s)	144, 1103
AsuHPI	GGTGA	4 cut(s)	28, 102, 590, 1178
AsuII	TTCGAA	1 cut(s)	1111
AvaI	CYCGRG	1 cut(s)	636
AvaII	GGWCC	3 cut(s)	91, 187, 935
BaeI	ACNNNNGTAYC	2 cut(s)	822, 855
BanII	GRGCYC	1 cut(s)	525
Bbv12I	GWGCWC	2 cut(s)	101, 525
BbvI	GCAGC	9 cut(s)	91, 187, 314, 598, 781, 814, 1009, 1048, 1091
BccI	CCATC	4 cut(s)	137, 143, 215, 919
BceAI	ACGGC	1 cut(s)	262
BcgI	CGANNNNNNTGC	4 cut(s)	590, 624, 791, 825
BciT130I	CCWGG	2 cut(s)	737, 939
BcnI	CCSGG	2 cut(s)	144, 1103
BcoDI	GTCTC	3 cut(s)	52, 284, 644
BfaI	CTAG	3 cut(s)	657, 918, 1196
BfmI	CTRYAG	1 cut(s)	679
BfrI	CTTAAG	1 cut(s)	395
BlpI	GCTNAGC	2 cut(s)	27, 306
Bme1390I	CCNGG	4 cut(s)	144, 737, 939, 1103
Bme18I	GGWCC	3 cut(s)	91, 187, 935
BmeT110I	CYCGRG	1 cut(s)	636
BmgT120I	GGNCC	4 cut(s)	91, 158, 187, 935
BmiI	GGNNCC	2 cut(s)	92, 160
BmrFI	CCNGG	4 cut(s)	144, 737, 939, 1103
BmrI	ACTGGG	1 cut(s)	396
BmsI	GCATC	5 cut(s)	307, 454, 719, 894, 1142
BmuI	ACTGGG	1 cut(s)	396
BpmI	CTGGAG	1 cut(s)	291
Bpu1102I	GCTNAGC	2 cut(s)	27, 306
Bpu14I	TTCGAA	1 cut(s)	1111
BpuMI	CCSGG	2 cut(s)	144, 1103
BsaI	GGTCTC	1 cut(s)	284
BsaJI	CCNNGG	5 cut(s)	258, 551, 600, 747, 1102
BsaWI	WCCGGW	4 cut(s)	93, 890, 1133, 1207
BsaXI	ACNNNNNCTCC	2 cut(s)	47, 77
Bsc4I	CCNNNNNNNGG	5 cut(s)	149, 213, 248, 386, 959
Bse1I	ACTGG	3 cut(s)	274, 391, 532
Bse3DI	GCAATG	1 cut(s)	804
BseAI	TCCGGA	1 cut(s)	1133
BseBI	CCWGG	2 cut(s)	737, 939
BseDI	CCNNGG	5 cut(s)	258, 551, 600, 747, 1102
BseGI	GGATG	2 cut(s)	909, 1157
BseLI	CCNNNNNNNGG	5 cut(s)	149, 213, 248, 386, 959
BseMI	GCAATG	1 cut(s)	804
BseMII	CTCAG	1 cut(s)	1030
BseNI	ACTGG	3 cut(s)	274, 391, 532
BseRI	GAGGAG	1 cut(s)	596
BseXI	GCAGC	9 cut(s)	91, 187, 314, 598, 781, 814, 1009, 1048, 1091
BseYI	CCCAGC	1 cut(s)	328
BshFI	GGCC	2 cut(s)	159, 436
BsiHKAI	GWGCWC	2 cut(s)	101, 525
BsiHKCI	CYCGRG	1 cut(s)	636
BsiSI	CCGG	6 cut(s)	94, 144, 891, 1102, 1134, 1208
BslI	CCNNNNNNNGG	5 cut(s)	149, 213, 248, 386, 959
BsmAI	GTCTC	3 cut(s)	52, 284, 644
BsnI	GGCC	2 cut(s)	159, 436
Bso31I	GGTCTC	1 cut(s)	284
BsoBI	CYCGRG	1 cut(s)	636
Bsp119I	TTCGAA	1 cut(s)	1111
Bsp1286I	GDGCHC	2 cut(s)	101, 525
Bsp13I	TCCGGA	1 cut(s)	1133
Bsp143I	GATC	1 cut(s)	625
Bsp1720I	GCTNAGC	2 cut(s)	27, 306
BspACI	CCGC	3 cut(s)	102, 452, 664
BspANI	GGCC	2 cut(s)	159, 436
BspCNI	CTCAG	1 cut(s)	1029
BspEI	TCCGGA	1 cut(s)	1133
BspLI	GGNNCC	2 cut(s)	92, 160
BspT104I	TTCGAA	1 cut(s)	1111
BspTI	CTTAAG	1 cut(s)	395
BspTNI	GGTCTC	1 cut(s)	284
BsrDI	GCAATG	1 cut(s)	804
BsrI	ACTGG	3 cut(s)	274, 391, 532
BssECI	CCNNGG	5 cut(s)	258, 551, 600, 747, 1102
BssMI	GATC	1 cut(s)	625
BssT1I	CCWWGG	3 cut(s)	258, 551, 747
Bst2UI	CCWGG	2 cut(s)	737, 939
Bst4CI	ACNGT	5 cut(s)	578, 825, 1012, 1043, 1117
Bst6I	CTCTTC	3 cut(s)	282, 473, 1164
BstAFI	CTTAAG	1 cut(s)	395
BstBI	TTCGAA	1 cut(s)	1111
BstC8I	GCNNGC	1 cut(s)	438
BstDEI	CTNAG	3 cut(s)	27, 306, 1016
BstF5I	GGATG	2 cut(s)	909, 1157
BstKTI	GATC	1 cut(s)	628
BstMAI	GTCTC	3 cut(s)	52, 284, 644
BstMBI	GATC	1 cut(s)	625
BstMWI	GCNNNNNNNGC	2 cut(s)	641, 673
BstNI	CCWGG	2 cut(s)	737, 939
BstNSI	RCATGY	1 cut(s)	781
BstSCI	CCNGG	4 cut(s)	142, 735, 937, 1101
BstSFI	CTRYAG	1 cut(s)	679
BstV1I	GCAGC	9 cut(s)	91, 187, 314, 598, 781, 814, 1009, 1048, 1091
BsuRI	GGCC	2 cut(s)	159, 436
BtgZI	GCGATG	1 cut(s)	162
BtsCI	GGATG	2 cut(s)	909, 1157
BtsIMutI	CAGTG	2 cut(s)	525, 1024
Cac8I	GCNNGC	1 cut(s)	438
CaiI	CAGNNNCTG	2 cut(s)	386, 938
Cfr13I	GGNCC	4 cut(s)	91, 158, 187, 935
Csp6I	GTAC	2 cut(s)	346, 1039
CviAII	CATG	2 cut(s)	778, 959
CviQI	GTAC	2 cut(s)	346, 1039
DdeI	CTNAG	3 cut(s)	27, 306, 1016
DpnI	GATC	1 cut(s)	627
DpnII	GATC	1 cut(s)	625
DraI	TTTAAA	2 cut(s)	226, 375
Eam1104I	CTCTTC	3 cut(s)	282, 473, 1164
EarI	CTCTTC	3 cut(s)	282, 473, 1164
Ecl136II	GAGCTC	1 cut(s)	523
Eco130I	CCWWGG	3 cut(s)	258, 551, 747
Eco24I	GRGCYC	1 cut(s)	525
Eco31I	GGTCTC	1 cut(s)	284
Eco32I	GATATC	1 cut(s)	1123
Eco47I	GGWCC	3 cut(s)	91, 187, 935
Eco53kI	GAGCTC	1 cut(s)	523
Eco57I	CTGAAG	1 cut(s)	513
Eco88I	CYCGRG	1 cut(s)	636
EcoICRI	GAGCTC	1 cut(s)	523
EcoO109I	RGGNCCY	2 cut(s)	187, 935
EcoRII	CCWGG	2 cut(s)	735, 937
EcoRV	GATATC	1 cut(s)	1123
EcoT14I	CCWWGG	3 cut(s)	258, 551, 747
EcoT38I	GRGCYC	1 cut(s)	525
ErhI	CCWWGG	3 cut(s)	258, 551, 747
FaeI	CATG	2 cut(s)	781, 962
FalI	AAGNNNNNCTT	2 cut(s)	279, 311
FatI	CATG	2 cut(s)	777, 958
FauNDI	CATATG	1 cut(s)	616
FokI	GGATG	2 cut(s)	916, 1164
FriOI	GRGCYC	1 cut(s)	525
FspBI	CTAG	3 cut(s)	657, 918, 1196
GsaI	CCCAGC	1 cut(s)	332
GsuI	CTGGAG	1 cut(s)	291
HaeIII	GGCC	2 cut(s)	159, 436
HapII	CCGG	6 cut(s)	94, 144, 891, 1102, 1134, 1208
Hin1II	CATG	2 cut(s)	781, 962
HincII	GTYRAC	2 cut(s)	502, 688
HindII	GTYRAC	2 cut(s)	502, 688
HindIII	AAGCTT	2 cut(s)	80, 398
HinfI	GANTC	3 cut(s)	732, 929, 1190
HpaII	CCGG	6 cut(s)	94, 144, 891, 1102, 1134, 1208
HphI	GGTGA	4 cut(s)	28, 102, 590, 1178
Hpy166II	GTNNAC	2 cut(s)	502, 688
Hpy188I	TCNGA	3 cut(s)	54, 316, 871
Hpy188III	TCNNGA	5 cut(s)	233, 404, 758, 971, 1134
Hpy8I	GTNNAC	2 cut(s)	502, 688
HpyAV	CCTTC	6 cut(s)	43, 85, 206, 401, 488, 1212
HpyCH4III	ACNGT	5 cut(s)	578, 825, 1012, 1043, 1117
HpyCH4V	TGCA	8 cut(s)	16, 320, 425, 614, 644, 797, 802, 1155
HpyF10VI	GCNNNNNNNGC	2 cut(s)	641, 673
HpyF3I	CTNAG	3 cut(s)	27, 306, 1016
Hsp92II	CATG	2 cut(s)	781, 962
Kpn2I	TCCGGA	1 cut(s)	1133
Kzo9I	GATC	1 cut(s)	625
LmnI	GCTCC	3 cut(s)	104, 332, 973
Lsp1109I	GCAGC	9 cut(s)	91, 187, 314, 598, 781, 814, 1009, 1048, 1091
LweI	GCATC	5 cut(s)	307, 454, 719, 894, 1142
MaeI	CTAG	3 cut(s)	657, 918, 1196
MaeIII	GTNAC	2 cut(s)	279, 838
MalI	GATC	1 cut(s)	627
MboI	GATC	1 cut(s)	625
MboII	GAAGA	5 cut(s)	299, 490, 1064, 1122, 1181
MfeI	CAATTG	2 cut(s)	336, 834
MhlI	GDGCHC	2 cut(s)	101, 525
MluCI	AATT	4 cut(s)	336, 427, 834, 1071
MroI	TCCGGA	1 cut(s)	1133
MseI	TTAA	4 cut(s)	225, 374, 396, 414
MslI	CAYNNNNRTG	1 cut(s)	780
MspA1I	CMGCKG	1 cut(s)	104
MspCI	CTTAAG	1 cut(s)	395
MspI	CCGG	6 cut(s)	94, 144, 891, 1102, 1134, 1208
MspR9I	CCNGG	4 cut(s)	144, 737, 939, 1103
MunI	CAATTG	2 cut(s)	336, 834
MvaI	CCWGG	2 cut(s)	737, 939
MwoI	GCNNNNNNNGC	2 cut(s)	641, 673
NciI	CCSGG	2 cut(s)	144, 1103
NdeI	CATATG	1 cut(s)	616
NdeII	GATC	1 cut(s)	625
NlaIII	CATG	2 cut(s)	781, 962
NlaIV	GGNNCC	2 cut(s)	92, 160
NspI	RCATGY	1 cut(s)	781
NspV	TTCGAA	1 cut(s)	1111
PaeR7I	CTCGAG	1 cut(s)	636
PciI	ACATGT	1 cut(s)	777
PcsI	WCGNNNNNNNCGW	1 cut(s)	634
PfeI	GAWTC	3 cut(s)	732, 929, 1190
PflMI	CCANNNNNTGG	1 cut(s)	386
PfoI	TCCNGGA	2 cut(s)	735, 937
PpuMI	RGGWCCY	2 cut(s)	187, 935
PscI	ACATGT	1 cut(s)	777
PsiI	TTATAA	1 cut(s)	515
Psp124BI	GAGCTC	1 cut(s)	525
Psp5II	RGGWCCY	2 cut(s)	187, 935
Psp6I	CCWGG	2 cut(s)	735, 937
PspFI	CCCAGC	1 cut(s)	328
PspGI	CCWGG	2 cut(s)	735, 937
PspN4I	GGNNCC	2 cut(s)	92, 160
PspPI	GGNCC	4 cut(s)	91, 158, 187, 935
PspPPI	RGGWCCY	2 cut(s)	187, 935
PspXI	VCTCGAGB	1 cut(s)	636
PstNI	CAGNNNCTG	2 cut(s)	386, 938
RsaI	GTAC	2 cut(s)	347, 1040
RsaNI	GTAC	2 cut(s)	346, 1039
RseI	CAYNNNNRTG	1 cut(s)	780
SacI	GAGCTC	1 cut(s)	525
SaqAI	TTAA	4 cut(s)	225, 374, 396, 414
Sau3AI	GATC	1 cut(s)	625
Sau96I	GGNCC	4 cut(s)	91, 158, 187, 935
ScrFI	CCNGG	4 cut(s)	144, 737, 939, 1103
SduI	GDGCHC	2 cut(s)	101, 525
SfaNI	GCATC	5 cut(s)	307, 454, 719, 894, 1142
SfcI	CTRYAG	1 cut(s)	679
Sfr274I	CTCGAG	1 cut(s)	636
SfuI	TTCGAA	1 cut(s)	1111
SinI	GGWCC	3 cut(s)	91, 187, 935
SlaI	CTCGAG	1 cut(s)	636
SmiMI	CAYNNNNRTG	1 cut(s)	780
SmlI	CTYRAG	2 cut(s)	395, 636
SmoI	CTYRAG	2 cut(s)	395, 636
Sse9I	AATT	4 cut(s)	336, 427, 834, 1071
SsiI	CCGC	3 cut(s)	102, 452, 664
SspMI	CTAG	3 cut(s)	657, 918, 1196
SstI	GAGCTC	1 cut(s)	525
StyD4I	CCNGG	4 cut(s)	142, 735, 937, 1101
StyI	CCWWGG	3 cut(s)	258, 551, 747
TaaI	ACNGT	5 cut(s)	578, 825, 1012, 1043, 1117
TaqI	TCGA	4 cut(s)	210, 462, 637, 1111
TasI	AATT	4 cut(s)	336, 427, 834, 1071
TauI	GCSGC	1 cut(s)	667
TfiI	GAWTC	3 cut(s)	732, 929, 1190
Tru1I	TTAA	4 cut(s)	225, 374, 396, 414
Tru9I	TTAA	4 cut(s)	225, 374, 396, 414
TscAI	CASTG	2 cut(s)	532, 1024
TspDTI	ATGAA	2 cut(s)	378, 585
TspRI	CASTG	2 cut(s)	532, 1024
Van91I	CCANNNNNTGG	1 cut(s)	386
Vha464I	CTTAAG	1 cut(s)	395
VpaK11BI	GGWCC	3 cut(s)	91, 187, 935
XapI	RAATTY	1 cut(s)	427
XceI	RCATGY	1 cut(s)	781
XhoI	CTCGAG	1 cut(s)	636
XspI	CTAG	3 cut(s)	657, 918, 1196

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.