FvH4_2g04971

Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Reverse (-)
4022822 .. 4027514
4693 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g04971.t1

Sequence Viewer

Length: 1221 bp
ATGGCGGCCCTGCAACTGAACGCTAAGCCCTTCACGCCCCCGCTTGTCTCTTCTCACCCAAGCTCCAAACACTCCTTCAAGCTCGCTAGGGTCAGCTGCTCCGCCGCTGTCGCCGCACCCTCGAAGCGCTACACAATCACCCTCCTTCCGGGCGATGGCATTGGCCCCGAGGTAATCTCAGTCGCCAAAAACGTCCTCAACCTCGCTGCCTCCATCGAAGGGATTGAGTTTAAATACCAAGAAATGCCTGTGGGTGGAAGTGCCTTGGATTTGACTGGAGTGCCGTTACCAGACGAGACCCTTTCGGCAGCTCTGCAATCCGATGCGGTTCTGCTTGGAGCAATTGGGGGGTACAAATGGGATAAAAACGAAAAGCATTTAAAACCAGAAACTGGGTTGCTTAAGCTTCGGGAAGGTCTTAAAGTGTTTGCGAATTTGAGGCCGGCAGTTGTTTTACCGCAGTTGGTCGATGCCTCGACTTTGAAGAGAGAGGTCGCGGAAGGGGTTGACCTTATGGTTGTAAGAGAGCTCACTGGTGGCATCTACTTTGGACAGCCAAGGGGTTTTGGCACCAATGAAAACGGTGAGGAGATTGGTTTCAATACCGAGGTGTATGCTGCCTATGAGGTTGATCGTATTGCTCGAGTTGCATTTGAGACCGCTAGGAAGCGGCAGGGAAAGCTCTGCAGTGTTGACAAAGCAAATGTCTTGGAGGCATCAATGTTTTGGAGAAAAAGAATCATGGAAATAGCCTCGGAATATCCTGATGTTGAACTCTCACACATGTATGTCGATAATGCTGCAATGCAACTTGTTCGTAATCCAAAACAGTTTGATACAATTGTAACAAACAACATTTTTGGCGATATATTATCTGATGAGGCATCAATGATTACTGGAAGTATTGGGATGCTTCCATCTGCGAGTCTTGGAAAATCAGGTCCTGGACTTTTTGAACCTATACATGGTTCGGCTCCTGATATTGCTGGACAGGATAAGGCAAACCCATTAGCAACGGTTCTCAGTGTTGCTATGCTTTTGAAGTACGGTCTAGGAGAAGAAAATGCTGCCCGGAGAATTGAGGCAGCAGTTTTAGATACCTTGGACCGGGGGTTTCGAACGGTTGACATCTATTCATCTGGAACGAAGTTGGTAGGATGCAAAGAAATGGGTGAAGAGGTATTGAAGTCGGTTGATTCTCGAGTTCCTTCTCCCATATGA

Protein Analysis

407

Amino Acids

43.6

Weight (kDa)

5.6

Isoelectric Point (pI)

32.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Iso_dh PF00180 45 - 394 1.2e-140 Isocitrate/isopropylmalate dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 569
AccB7I CCANNNNNTGG 1 cut(s) 392
AccII CGCG 1 cut(s) 497
AcsI RAATTY 1 cut(s) 433
AfaI GTAC 2 cut(s) 353, 1046
AfeI AGCGCT 1 cut(s) 128
AfiI CCNNNNNNNGG 7 cut(s) 148, 155, 219, 254, 392, 965, 1107
AflII CTTAAG 1 cut(s) 401
AflIII ACRYGT 1 cut(s) 783
AgsI TTSAA 7 cut(s) 79, 484, 601, 773, 956, 1042, 1186
AjnI CCWGG 1 cut(s) 943
AjuI GAANNNNNNNTTGG 2 cut(s) 59, 91
AluBI AGCT 7 cut(s) 63, 82, 96, 311, 406, 529, 682
AluI AGCT 7 cut(s) 63, 82, 96, 311, 406, 529, 682
Alw21I GWGCWC 1 cut(s) 531
Alw26I GTCTC 3 cut(s) 52, 290, 650
AlwNI CAGNNNCTG 2 cut(s) 392, 944
Ama87I CYCGRG 3 cut(s) 167, 642, 1200
Aor51HI AGCGCT 1 cut(s) 128
AoxI GGCC 3 cut(s) 6, 163, 440
ApeKI GCWGC 7 cut(s) 96, 206, 308, 617, 800, 1067, 1085
ApoI RAATTY 1 cut(s) 433
ArsI GACNNNNNNTTYG 2 cut(s) 690, 722
AspLEI GCGC 1 cut(s) 129
AspS9I GGNCC 4 cut(s) 7, 164, 941, 1105
AsuC2I CCSGG 3 cut(s) 150, 1072, 1109
AsuHPI GGTGA 4 cut(s) 47, 130, 596, 1184
AsuII TTCGAA 1 cut(s) 1117
AvaI CYCGRG 3 cut(s) 167, 642, 1200
AvaII GGWCC 2 cut(s) 941, 1105
BaeI ACNNNNGTAYC 2 cut(s) 828, 861
BanI GGYRCC 1 cut(s) 569
BanII GRGCYC 1 cut(s) 531
Bbv12I GWGCWC 1 cut(s) 531
BbvI GCAGC 7 cut(s) 83, 193, 320, 604, 787, 1054, 1097
BccI CCATC 3 cut(s) 149, 221, 925
BceAI ACGGC 1 cut(s) 268
BcgI CGANNNNNNTGC 6 cut(s) 596, 630, 782, 797, 816, 831
BciT130I CCWGG 1 cut(s) 945
BcnI CCSGG 3 cut(s) 150, 1072, 1109
BcoDI GTCTC 3 cut(s) 52, 290, 650
BfaI CTAG 3 cut(s) 87, 663, 1052
BfmI CTRYAG 1 cut(s) 685
BfoI RGCGCY 1 cut(s) 130
BfrI CTTAAG 1 cut(s) 401
BlpI GCTNAGC 1 cut(s) 24
Bme1390I CCNGG 4 cut(s) 150, 945, 1072, 1109
Bme18I GGWCC 2 cut(s) 941, 1105
BmeT110I CYCGRG 3 cut(s) 167, 642, 1200
BmgT120I GGNCC 4 cut(s) 7, 164, 941, 1105
BmiI GGNNCC 3 cut(s) 166, 571, 975
BmrFI CCNGG 4 cut(s) 150, 945, 1072, 1109
BmrI ACTGGG 1 cut(s) 402
BmsI GCATC 7 cut(s) 313, 460, 549, 725, 893, 900, 1148
BmuI ACTGGG 1 cut(s) 402
BplI GAGNNNNNCTC 2 cut(s) 161, 193
BpmI CTGGAG 1 cut(s) 297
Bpu1102I GCTNAGC 1 cut(s) 24
Bpu14I TTCGAA 1 cut(s) 1117
BpuMI CCSGG 3 cut(s) 150, 1072, 1109
BsaI GGTCTC 2 cut(s) 290, 650
BsaJI CCNNGG 7 cut(s) 168, 264, 557, 606, 753, 1101, 1108
BsaXI ACNNNNNCTCC 2 cut(s) 47, 77
Bsc4I CCNNNNNNNGG 7 cut(s) 148, 155, 219, 254, 392, 965, 1107
Bse118I RCCGGY 1 cut(s) 442
Bse1I ACTGG 4 cut(s) 280, 397, 538, 901
Bse3DI GCAATG 1 cut(s) 810
BseBI CCWGG 1 cut(s) 945
BseDI CCNNGG 7 cut(s) 168, 264, 557, 606, 753, 1101, 1108
BseGI GGATG 2 cut(s) 915, 1163
BseLI CCNNNNNNNGG 7 cut(s) 148, 155, 219, 254, 392, 965, 1107
BseMI GCAATG 1 cut(s) 810
BseMII CTCAG 2 cut(s) 192, 1036
BseNI ACTGG 4 cut(s) 280, 397, 538, 901
BseRI GAGGAG 1 cut(s) 602
BseXI GCAGC 7 cut(s) 83, 193, 320, 604, 787, 1054, 1097
Bsh1236I CGCG 1 cut(s) 497
BshFI GGCC 3 cut(s) 8, 165, 442
BshNI GGYRCC 1 cut(s) 569
BsiHKAI GWGCWC 1 cut(s) 531
BsiHKCI CYCGRG 3 cut(s) 167, 642, 1200
BsiSI CCGG 4 cut(s) 149, 443, 1072, 1108
BslI CCNNNNNNNGG 7 cut(s) 148, 155, 219, 254, 392, 965, 1107
BsmAI GTCTC 3 cut(s) 52, 290, 650
BsnI GGCC 3 cut(s) 8, 165, 442
Bso31I GGTCTC 2 cut(s) 290, 650
BsoBI CYCGRG 3 cut(s) 167, 642, 1200
Bsp119I TTCGAA 1 cut(s) 1117
Bsp1286I GDGCHC 1 cut(s) 531
Bsp143I GATC 1 cut(s) 631
Bsp1720I GCTNAGC 1 cut(s) 24
BspANI GGCC 3 cut(s) 8, 165, 442
BspCNI CTCAG 2 cut(s) 191, 1035
BspFNI CGCG 1 cut(s) 497
BspLI GGNNCC 3 cut(s) 166, 571, 975
BspMAI CTGCAG 1 cut(s) 689
BspT104I TTCGAA 1 cut(s) 1117
BspT107I GGYRCC 1 cut(s) 569
BspTI CTTAAG 1 cut(s) 401
BspTNI GGTCTC 2 cut(s) 290, 650
BsrDI GCAATG 1 cut(s) 810
BsrFI RCCGGY 1 cut(s) 442
BsrI ACTGG 4 cut(s) 280, 397, 538, 901
BssAI RCCGGY 1 cut(s) 442
BssECI CCNNGG 7 cut(s) 168, 264, 557, 606, 753, 1101, 1108
BssMI GATC 1 cut(s) 631
BssT1I CCWWGG 3 cut(s) 264, 557, 1101
Bst2UI CCWGG 1 cut(s) 945
Bst4CI ACNGT 5 cut(s) 584, 831, 1018, 1049, 1123
Bst6I CTCTTC 3 cut(s) 55, 479, 1170
BstAFI CTTAAG 1 cut(s) 401
BstBI TTCGAA 1 cut(s) 1117
BstC8I GCNNGC 2 cut(s) 84, 444
BstDEI CTNAG 3 cut(s) 24, 178, 1022
BstF5I GGATG 2 cut(s) 915, 1163
BstFNI CGCG 1 cut(s) 497
BstH2I RGCGCY 1 cut(s) 130
BstHHI GCGC 1 cut(s) 129
BstKTI GATC 1 cut(s) 634
BstMAI GTCTC 3 cut(s) 52, 290, 650
BstMBI GATC 1 cut(s) 631
BstMWI GCNNNNNNNGC 5 cut(s) 34, 110, 113, 647, 679
BstNI CCWGG 1 cut(s) 945
BstNSI RCATGY 1 cut(s) 787
BstSCI CCNGG 4 cut(s) 148, 943, 1070, 1107
BstSFI CTRYAG 1 cut(s) 685
BstUI CGCG 1 cut(s) 497
BstV1I GCAGC 7 cut(s) 83, 193, 320, 604, 787, 1054, 1097
BsuRI GGCC 3 cut(s) 8, 165, 442
BtgZI GCGATG 1 cut(s) 168
BtsCI GGATG 2 cut(s) 915, 1163
BtsI GCAGTG 1 cut(s) 694
BtsIMutI CAGTG 3 cut(s) 531, 694, 1030
Cac8I GCNNGC 2 cut(s) 84, 444
CaiI CAGNNNCTG 2 cut(s) 392, 944
CfoI GCGC 1 cut(s) 129
Cfr10I RCCGGY 1 cut(s) 442
Cfr13I GGNCC 4 cut(s) 7, 164, 941, 1105
Csp6I GTAC 2 cut(s) 352, 1045
CviAII CATG 3 cut(s) 742, 784, 965
CviQI GTAC 2 cut(s) 352, 1045
DdeI CTNAG 3 cut(s) 24, 178, 1022
DpnI GATC 1 cut(s) 633
DpnII GATC 1 cut(s) 631
DraI TTTAAA 2 cut(s) 232, 381
Eam1104I CTCTTC 3 cut(s) 55, 479, 1170
EarI CTCTTC 3 cut(s) 55, 479, 1170
EciI GGCGGA 1 cut(s) 91
Ecl136II GAGCTC 1 cut(s) 529
Eco130I CCWWGG 3 cut(s) 264, 557, 1101
Eco24I GRGCYC 1 cut(s) 531
Eco31I GGTCTC 2 cut(s) 290, 650
Eco47I GGWCC 2 cut(s) 941, 1105
Eco47III AGCGCT 1 cut(s) 128
Eco53kI GAGCTC 1 cut(s) 529
Eco88I CYCGRG 3 cut(s) 167, 642, 1200
EcoICRI GAGCTC 1 cut(s) 529
EcoO109I RGGNCCY 1 cut(s) 941
EcoRII CCWGG 1 cut(s) 943
EcoT14I CCWWGG 3 cut(s) 264, 557, 1101
EcoT38I GRGCYC 1 cut(s) 531
ErhI CCWWGG 3 cut(s) 264, 557, 1101
FaeI CATG 3 cut(s) 745, 787, 968
FatI CATG 3 cut(s) 741, 783, 964
FauI CCCGC 1 cut(s) 48
FauNDI CATATG 1 cut(s) 1217
FokI GGATG 2 cut(s) 922, 1170
FriOI GRGCYC 1 cut(s) 531
FspBI CTAG 3 cut(s) 87, 663, 1052
GlaI GCGC 1 cut(s) 128
GsuI CTGGAG 1 cut(s) 297
HaeII RGCGCY 1 cut(s) 130
HaeIII GGCC 3 cut(s) 8, 165, 442
HapII CCGG 4 cut(s) 149, 443, 1072, 1108
HhaI GCGC 1 cut(s) 129
Hin1II CATG 3 cut(s) 745, 787, 968
Hin6I GCGC 1 cut(s) 127
HinP1I GCGC 1 cut(s) 127
HincII GTYRAC 3 cut(s) 508, 694, 1126
HindII GTYRAC 3 cut(s) 508, 694, 1126
HindIII AAGCTT 1 cut(s) 404
HinfI GANTC 3 cut(s) 738, 925, 1196
HpaII CCGG 4 cut(s) 149, 443, 1072, 1108
HphI GGTGA 4 cut(s) 47, 130, 596, 1184
Hpy166II GTNNAC 3 cut(s) 508, 694, 1126
Hpy188I TCNGA 3 cut(s) 322, 757, 877
Hpy188III TCNNGA 5 cut(s) 410, 764, 977, 1140, 1200
Hpy8I GTNNAC 3 cut(s) 508, 694, 1126
HpyAV CCTTC 7 cut(s) 40, 85, 155, 212, 407, 494, 1218
HpyCH4III ACNGT 5 cut(s) 584, 831, 1018, 1049, 1123
HpyCH4IV ACGT 1 cut(s) 192
HpyCH4V TGCA 7 cut(s) 13, 316, 650, 687, 803, 808, 1161
HpyF10VI GCNNNNNNNGC 5 cut(s) 34, 110, 113, 647, 679
HpyF3I CTNAG 3 cut(s) 24, 178, 1022
HpySE526I ACGT 1 cut(s) 192
Hsp92II CATG 3 cut(s) 745, 787, 968
HspAI GCGC 1 cut(s) 127
KroI GCCGGC 1 cut(s) 442
KroNI GCCGGC 1 cut(s) 444
Kzo9I GATC 1 cut(s) 631
LmnI GCTCC 4 cut(s) 68, 104, 338, 979
Lsp1109I GCAGC 7 cut(s) 83, 193, 320, 604, 787, 1054, 1097
LweI GCATC 7 cut(s) 313, 460, 549, 725, 893, 900, 1148
MaeI CTAG 3 cut(s) 87, 663, 1052
MaeII ACGT 1 cut(s) 192
MaeIII GTNAC 2 cut(s) 285, 844
MalI GATC 1 cut(s) 633
MboI GATC 1 cut(s) 631
MboII GAAGA 4 cut(s) 42, 496, 1070, 1187
MfeI CAATTG 2 cut(s) 342, 840
MhlI GDGCHC 1 cut(s) 531
MluCI AATT 4 cut(s) 342, 433, 840, 1077
MlyI GAGTC 1 cut(s) 934
MroNI GCCGGC 1 cut(s) 442
MseI TTAA 4 cut(s) 231, 380, 402, 420
MslI CAYNNNNRTG 1 cut(s) 786
MspA1I CMGCKG 2 cut(s) 96, 107
MspCI CTTAAG 1 cut(s) 401
MspI CCGG 4 cut(s) 149, 443, 1072, 1108
MspR9I CCNGG 4 cut(s) 150, 945, 1072, 1109
MunI CAATTG 2 cut(s) 342, 840
MvaI CCWGG 1 cut(s) 945
MvnI CGCG 1 cut(s) 497
MwoI GCNNNNNNNGC 5 cut(s) 34, 110, 113, 647, 679
NaeI GCCGGC 1 cut(s) 444
NciI CCSGG 3 cut(s) 150, 1072, 1109
NdeI CATATG 1 cut(s) 1217
NdeII GATC 1 cut(s) 631
NgoMIV GCCGGC 1 cut(s) 442
NlaIII CATG 3 cut(s) 745, 787, 968
NlaIV GGNNCC 3 cut(s) 166, 571, 975
NspI RCATGY 1 cut(s) 787
NspV TTCGAA 1 cut(s) 1117
PaeR7I CTCGAG 2 cut(s) 642, 1200
PciI ACATGT 1 cut(s) 783
PcsI WCGNNNNNNNCGW 2 cut(s) 189, 640
PdiI GCCGGC 1 cut(s) 444
PfeI GAWTC 2 cut(s) 738, 1196
PflMI CCANNNNNTGG 1 cut(s) 392
PfoI TCCNGGA 1 cut(s) 943
PleI GAGTC 1 cut(s) 933
PpsI GAGTC 1 cut(s) 933
PpuMI RGGWCCY 1 cut(s) 941
PscI ACATGT 1 cut(s) 783
Psp124BI GAGCTC 1 cut(s) 531
Psp5II RGGWCCY 1 cut(s) 941
Psp6I CCWGG 1 cut(s) 943
PspGI CCWGG 1 cut(s) 943
PspN4I GGNNCC 3 cut(s) 166, 571, 975
PspPI GGNCC 4 cut(s) 7, 164, 941, 1105
PspPPI RGGWCCY 1 cut(s) 941
PspXI VCTCGAGB 1 cut(s) 642
PstI CTGCAG 1 cut(s) 689
PstNI CAGNNNCTG 2 cut(s) 392, 944
PvuII CAGCTG 1 cut(s) 96
RsaI GTAC 2 cut(s) 353, 1046
RsaNI GTAC 2 cut(s) 352, 1045
RseI CAYNNNNRTG 1 cut(s) 786
SacI GAGCTC 1 cut(s) 531
SaqAI TTAA 4 cut(s) 231, 380, 402, 420
Sau3AI GATC 1 cut(s) 631
Sau96I GGNCC 4 cut(s) 7, 164, 941, 1105
SchI GAGTC 1 cut(s) 934
ScrFI CCNGG 4 cut(s) 150, 945, 1072, 1109
SduI GDGCHC 1 cut(s) 531
SfaNI GCATC 7 cut(s) 313, 460, 549, 725, 893, 900, 1148
SfcI CTRYAG 1 cut(s) 685
Sfr274I CTCGAG 2 cut(s) 642, 1200
SfuI TTCGAA 1 cut(s) 1117
SinI GGWCC 2 cut(s) 941, 1105
SlaI CTCGAG 2 cut(s) 642, 1200
SmiMI CAYNNNNRTG 1 cut(s) 786
SmlI CTYRAG 3 cut(s) 401, 642, 1200
SmoI CTYRAG 3 cut(s) 401, 642, 1200
Sse9I AATT 4 cut(s) 342, 433, 840, 1077
SspMI CTAG 3 cut(s) 87, 663, 1052
SstI GAGCTC 1 cut(s) 531
StyD4I CCNGG 4 cut(s) 148, 943, 1070, 1107
StyI CCWWGG 3 cut(s) 264, 557, 1101
TaaI ACNGT 5 cut(s) 584, 831, 1018, 1049, 1123
TaiI ACGT 1 cut(s) 195
TaqI TCGA 8 cut(s) 122, 216, 468, 476, 643, 792, 1117, 1201
TasI AATT 4 cut(s) 342, 433, 840, 1077
TauI GCSGC 4 cut(s) 8, 107, 116, 673
TfiI GAWTC 2 cut(s) 738, 1196
Tru1I TTAA 4 cut(s) 231, 380, 402, 420
Tru9I TTAA 4 cut(s) 231, 380, 402, 420
TscAI CASTG 3 cut(s) 538, 694, 1030
TseI GCWGC 7 cut(s) 96, 206, 308, 617, 800, 1067, 1085
TspDTI ATGAA 2 cut(s) 591, 1125
TspRI CASTG 3 cut(s) 538, 694, 1030
Van91I CCANNNNNTGG 1 cut(s) 392
Vha464I CTTAAG 1 cut(s) 401
VpaK11BI GGWCC 2 cut(s) 941, 1105
XapI RAATTY 1 cut(s) 433
XceI RCATGY 1 cut(s) 787
XhoI CTCGAG 2 cut(s) 642, 1200
XspI CTAG 3 cut(s) 87, 663, 1052
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.