Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0006646

Physical Location & Seq

Genomic Coordinates Reverse (-)

47327038 .. 47329776

Gene Structure 2739 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG350300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGAAACGGTCCAACATGCAGGATAAGGCAAACCCATTAGCAATGATTCTCAGTGTTGCTATGCATTTGAAGTACGGTCTTGGAGAAGAAAATGCTACCAAGAGAATTGAGGCAACAGTCCTTGATACTTTGAACCGGGGGTTTCGAACGGTTGATACCTATTCGTCCGGAACGCATTCCTTGGGTAGGTGTGGATGGTTACTTGCAAAGAAAGTCAGTGATAGTCTTAATGACTCTATAGGCCGGCAGATGCAGATTAAGATAGATGTTCATGAGAAAATGACTTTCTTCTGGTTTATAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006790 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009651 GO:0009941 GO:0009987 GO:0016143 GO:0016144 GO:0019748 GO:0019757 GO:0019758 GO:0019760 GO:0019761 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044249 GO:0044272 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0050896 GO:0071704 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00290 ko00660 ko00966 ko01100 ko01110 ko01210 ko01230 map00290 map00660 map00966 map01100 map01110 map01210 map01230

Pfam Domains

Protein Families

Iso_dh

Protein Analysis

101

Amino Acids

11.44

Weight (kDa)

9.46

Isoelectric Point (pI)

38.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Iso_dh	PF00180	7 - 57	3.4e-11	Isocitrate/isopropylmalate dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0006646)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31180 AT1G31180 AT1G80560 AT5G14200 AT5G14200
fragaria_vesca	FvH4_2g04971
malus_domestica	MD17G1218700.v1.1
prunus_persica	Prupe.3G094300_v2.0.a1 Prupe.3G094300_v2.0.a1
pyrus_communis	pycom17g22270 pycom17g22330
rosa_chinensis	RchiOBHm_Chr2g0133781 RchiOBHm_Chr2g0133821
rosa_laevigata	RLG00000019364
rosa_multiflora	Rmu_sc0001782.1_g000049 Rmu_sc0001782.1_g000053 Rmu_sc0003682.1_g000003 Rmu_sc0004983.1_g000001
rosa_roxburghii	Rroxscaffold_2G00110790 Rroxscaffold_2G00110820
rosa_rugosa	Rorug02G0313900
rosa_samantha	Rh2AG367200 Rh2CG350300 Rh2CG350600 Rh2DG389700
rosa_wichuraiana	Rw2G029860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	167
AfaI	GTAC	1 cut(s)	74
AfiI	CCNNNNNNNGG	1 cut(s)	186
AgsI	TTSAA	2 cut(s)	70, 133
AluBI	AGCT	1 cut(s)	302
AluI	AGCT	1 cut(s)	302
Aor13HI	TCCGGA	1 cut(s)	167
AoxI	GGCC	1 cut(s)	241
Asp700I	GAANNNNTTC	1 cut(s)	175
AspS9I	GGNCC	1 cut(s)	9
AsuC2I	CCSGG	1 cut(s)	137
AsuII	TTCGAA	1 cut(s)	145
AvaII	GGWCC	1 cut(s)	9
BccI	CCATC	1 cut(s)	189
BcnI	CCSGG	1 cut(s)	137
BfmI	CTRYAG	1 cut(s)	237
Bme1390I	CCNGG	1 cut(s)	137
Bme18I	GGWCC	1 cut(s)	9
BmgT120I	GGNCC	1 cut(s)	9
BmrFI	CCNGG	1 cut(s)	137
BmsI	GCATC	1 cut(s)	240
Bpu14I	TTCGAA	1 cut(s)	145
BpuMI	CCSGG	1 cut(s)	137
BsaJI	CCNNGG	2 cut(s)	136, 180
BsaWI	WCCGGW	1 cut(s)	167
Bsc4I	CCNNNNNNNGG	1 cut(s)	186
Bse118I	RCCGGY	1 cut(s)	243
Bse3DI	GCAATG	1 cut(s)	48
BseAI	TCCGGA	1 cut(s)	167
BseDI	CCNNGG	2 cut(s)	136, 180
BseGI	GGATG	1 cut(s)	200
BseLI	CCNNNNNNNGG	1 cut(s)	186
BseMI	GCAATG	1 cut(s)	48
BseMII	CTCAG	1 cut(s)	64
BshFI	GGCC	1 cut(s)	243
BsiSI	CCGG	3 cut(s)	136, 168, 244
BslI	CCNNNNNNNGG	1 cut(s)	186
BsmI	GAATGC	1 cut(s)	175
BsnI	GGCC	1 cut(s)	243
Bsp119I	TTCGAA	1 cut(s)	145
Bsp13I	TCCGGA	1 cut(s)	167
BspANI	GGCC	1 cut(s)	243
BspCNI	CTCAG	1 cut(s)	63
BspEI	TCCGGA	1 cut(s)	167
BspHI	TCATGA	1 cut(s)	271
BspT104I	TTCGAA	1 cut(s)	145
BsrDI	GCAATG	1 cut(s)	48
BsrFI	RCCGGY	1 cut(s)	243
BssAI	RCCGGY	1 cut(s)	243
BssECI	CCNNGG	2 cut(s)	136, 180
BssT1I	CCWWGG	1 cut(s)	180
Bst4CI	ACNGT	4 cut(s)	9, 77, 118, 151
BstBI	TTCGAA	1 cut(s)	145
BstC8I	GCNNGC	1 cut(s)	245
BstDEI	CTNAG	1 cut(s)	50
BstENI	CCTNNNNNAGG	1 cut(s)	184
BstF5I	GGATG	1 cut(s)	200
BstNSI	RCATGY	1 cut(s)	19
BstSCI	CCNGG	1 cut(s)	135
BstSFI	CTRYAG	1 cut(s)	237
BsuRI	GGCC	1 cut(s)	243
BtsCI	GGATG	1 cut(s)	200
BtsIMutI	CAGTG	2 cut(s)	58, 223
Cac8I	GCNNGC	1 cut(s)	245
CciI	TCATGA	1 cut(s)	271
Cfr10I	RCCGGY	1 cut(s)	243
Cfr13I	GGNCC	1 cut(s)	9
Csp6I	GTAC	1 cut(s)	73
CviAII	CATG	2 cut(s)	16, 272
CviJI	RGCY	2 cut(s)	243, 302
CviKI_1	RGCY	2 cut(s)	243, 302
CviQI	GTAC	1 cut(s)	73
DdeI	CTNAG	1 cut(s)	50
Eco130I	CCWWGG	1 cut(s)	180
Eco47I	GGWCC	1 cut(s)	9
EcoNI	CCTNNNNNAGG	1 cut(s)	184
EcoT14I	CCWWGG	1 cut(s)	180
EcoT22I	ATGCAT	1 cut(s)	66
ErhI	CCWWGG	1 cut(s)	180
FaeI	CATG	2 cut(s)	19, 275
FaiI	YATR	5 cut(s)	17, 62, 239, 273, 299
FatI	CATG	2 cut(s)	15, 271
FokI	GGATG	1 cut(s)	207
HaeIII	GGCC	1 cut(s)	243
HapII	CCGG	3 cut(s)	136, 168, 244
Hin1II	CATG	2 cut(s)	19, 275
HinfI	GANTC	2 cut(s)	46, 233
HpaII	CCGG	3 cut(s)	136, 168, 244
Hpy188III	TCNNGA	2 cut(s)	168, 272
HpyCH4III	ACNGT	4 cut(s)	9, 77, 118, 151
HpyCH4V	TGCA	4 cut(s)	19, 64, 206, 253
HpyF3I	CTNAG	1 cut(s)	50
Hsp92II	CATG	2 cut(s)	19, 275
Kpn2I	TCCGGA	1 cut(s)	167
KroI	GCCGGC	1 cut(s)	243
KroNI	GCCGGC	1 cut(s)	245
LpnPI	CCDG	5 cut(s)	5, 149, 181, 257, 277
LweI	GCATC	1 cut(s)	240
MaeIII	GTNAC	1 cut(s)	198
MboII	GAAGA	2 cut(s)	98, 280
MluCI	AATT	1 cut(s)	105
MlyI	GAGTC	1 cut(s)	227
MmeI	TCCRAC	1 cut(s)	36
MnlI	CCTC	1 cut(s)	103
Mph1103I	ATGCAT	1 cut(s)	66
MroI	TCCGGA	1 cut(s)	167
MroNI	GCCGGC	1 cut(s)	243
MroXI	GAANNNNTTC	1 cut(s)	175
MseI	TTAA	3 cut(s)	228, 258, 304
MspI	CCGG	3 cut(s)	136, 168, 244
MspR9I	CCNGG	1 cut(s)	137
Mva1269I	GAATGC	1 cut(s)	175
NaeI	GCCGGC	1 cut(s)	245
NciI	CCSGG	1 cut(s)	137
NgoMIV	GCCGGC	1 cut(s)	243
NlaIII	CATG	2 cut(s)	19, 275
NsiI	ATGCAT	1 cut(s)	66
NspI	RCATGY	1 cut(s)	19
NspV	TTCGAA	1 cut(s)	145
PagI	TCATGA	1 cut(s)	271
PctI	GAATGC	1 cut(s)	175
PdiI	GCCGGC	1 cut(s)	245
PdmI	GAANNNNTTC	1 cut(s)	175
PfeI	GAWTC	1 cut(s)	46
PleI	GAGTC	1 cut(s)	227
PpsI	GAGTC	1 cut(s)	227
PspPI	GGNCC	1 cut(s)	9
PsrI	GAACNNNNNNTAC	2 cut(s)	139, 171
RsaI	GTAC	1 cut(s)	74
RsaNI	GTAC	1 cut(s)	73
SaqAI	TTAA	3 cut(s)	228, 258, 304
Sau96I	GGNCC	1 cut(s)	9
SchI	GAGTC	1 cut(s)	227
ScrFI	CCNGG	1 cut(s)	137
SetI	ASST	3 cut(s)	161, 191, 304
SfaNI	GCATC	1 cut(s)	240
SfcI	CTRYAG	1 cut(s)	237
SfuI	TTCGAA	1 cut(s)	145
SinI	GGWCC	1 cut(s)	9
Sse9I	AATT	1 cut(s)	105
StyD4I	CCNGG	1 cut(s)	135
StyI	CCWWGG	1 cut(s)	180
TaaI	ACNGT	4 cut(s)	9, 77, 118, 151
TaqI	TCGA	1 cut(s)	145
TasI	AATT	1 cut(s)	105
TfiI	GAWTC	1 cut(s)	46
Tru1I	TTAA	3 cut(s)	228, 258, 304
Tru9I	TTAA	3 cut(s)	228, 258, 304
TscAI	CASTG	2 cut(s)	58, 223
TspDTI	ATGAA	2 cut(s)	17, 260
TspRI	CASTG	2 cut(s)	58, 223
VpaK11BI	GGWCC	1 cut(s)	9
XagI	CCTNNNNNAGG	1 cut(s)	184
XceI	RCATGY	1 cut(s)	19
XmnI	GAANNNNTTC	1 cut(s)	175
Zsp2I	ATGCAT	1 cut(s)	66

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.