Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0006646

Physical Location & Seq

Genomic Coordinates Reverse (-)

50683796 .. 50684369

Gene Structure 574 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ50491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGATTACCGGAAGTATTGGGATGCTTCCATCTGCTAGTCTTGGAGAATCAGGTCCTGGACTTTTTGAACCTATACATGGTTCTGGTCTTGATATTGCTGGACAGGATAAGGCAAACCCATTAGCAACGGTTCTCAGTGCTGCTATGCTTTTGAAGTACGGTCTTGGAGAAGAAAATGCTGCCAAGAGAATTGAGGCAGTAGTCCTTGATACTTTGAACCGGGGGTTTCGAACAGTTGATATCTATTCGTCCGGAACGGTGGACATGATAAAATCCAACATATTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006790 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009651 GO:0009941 GO:0009987 GO:0016143 GO:0016144 GO:0019748 GO:0019757 GO:0019758 GO:0019760 GO:0019761 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044249 GO:0044272 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0050896 GO:0071704 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00290 ko00660 ko00966 ko01100 ko01110 ko01210 ko01230 map00290 map00660 map00966 map01100 map01110 map01210 map01230

Pfam Domains

Protein Families

Iso_dh

Protein Analysis

95

Amino Acids

9.85

Weight (kDa)

4.87

Isoelectric Point (pI)

27.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Iso_dh	PF00180	1 - 87	1.7e-31	Isocitrate/isopropylmalate dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0006646)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31180 AT1G31180 AT1G80560 AT5G14200 AT5G14200
fragaria_vesca	FvH4_2g04971
malus_domestica	MD17G1218700.v1.1
prunus_persica	Prupe.3G094300_v2.0.a1 Prupe.3G094300_v2.0.a1
pyrus_communis	pycom17g22270 pycom17g22330
rosa_chinensis	RchiOBHm_Chr2g0133781 RchiOBHm_Chr2g0133821
rosa_laevigata	RLG00000019364
rosa_multiflora	Rmu_sc0001782.1_g000049 Rmu_sc0001782.1_g000053 Rmu_sc0003682.1_g000003 Rmu_sc0004983.1_g000001
rosa_roxburghii	Rroxscaffold_2G00110790 Rroxscaffold_2G00110820
rosa_rugosa	Rorug02G0313900
rosa_samantha	Rh2AG367200 Rh2CG350300 Rh2CG350600 Rh2DG389700
rosa_wichuraiana	Rw2G029860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	286
AccIII	TCCGGA	1 cut(s)	251
AfaI	GTAC	1 cut(s)	158
AfiI	CCNNNNNNNGG	1 cut(s)	77
AgsI	TTSAA	3 cut(s)	68, 154, 217
AjnI	CCWGG	1 cut(s)	55
AlwNI	CAGNNNCTG	1 cut(s)	56
Aor13HI	TCCGGA	1 cut(s)	251
ApeKI	GCWGC	2 cut(s)	140, 179
AspS9I	GGNCC	1 cut(s)	53
AsuC2I	CCSGG	1 cut(s)	221
AsuII	TTCGAA	1 cut(s)	229
AvaII	GGWCC	1 cut(s)	53
BbvI	GCAGC	2 cut(s)	127, 166
BccI	CCATC	1 cut(s)	37
BciT130I	CCWGG	1 cut(s)	57
BcnI	CCSGG	1 cut(s)	221
BfaI	CTAG	1 cut(s)	36
BisI	GCNGC	2 cut(s)	141, 180
BlsI	GCNGC	2 cut(s)	142, 181
Bme1390I	CCNGG	2 cut(s)	57, 221
Bme18I	GGWCC	1 cut(s)	53
BmgT120I	GGNCC	1 cut(s)	53
BmrFI	CCNGG	2 cut(s)	57, 221
BmsI	GCATC	1 cut(s)	12
Bpu14I	TTCGAA	1 cut(s)	229
BpuMI	CCSGG	1 cut(s)	221
BsaJI	CCNNGG	1 cut(s)	220
BsaWI	WCCGGW	2 cut(s)	8, 251
Bsc4I	CCNNNNNNNGG	1 cut(s)	77
BseAI	TCCGGA	1 cut(s)	251
BseBI	CCWGG	1 cut(s)	57
BseDI	CCNNGG	1 cut(s)	220
BseGI	GGATG	1 cut(s)	27
BseLI	CCNNNNNNNGG	1 cut(s)	77
BseMII	CTCAG	1 cut(s)	148
BseXI	GCAGC	2 cut(s)	127, 166
BsiSI	CCGG	3 cut(s)	9, 220, 252
BslI	CCNNNNNNNGG	1 cut(s)	77
Bsp119I	TTCGAA	1 cut(s)	229
Bsp13I	TCCGGA	1 cut(s)	251
BspCNI	CTCAG	1 cut(s)	147
BspEI	TCCGGA	1 cut(s)	251
BspT104I	TTCGAA	1 cut(s)	229
BssECI	CCNNGG	1 cut(s)	220
Bst2UI	CCWGG	1 cut(s)	57
Bst4CI	ACNGT	4 cut(s)	130, 161, 235, 259
BstBI	TTCGAA	1 cut(s)	229
BstDEI	CTNAG	1 cut(s)	134
BstF5I	GGATG	1 cut(s)	27
BstNI	CCWGG	1 cut(s)	57
BstSCI	CCNGG	2 cut(s)	55, 219
BstV1I	GCAGC	2 cut(s)	127, 166
BtsCI	GGATG	1 cut(s)	27
BtsIMutI	CAGTG	1 cut(s)	142
CaiI	CAGNNNCTG	1 cut(s)	56
Cfr13I	GGNCC	1 cut(s)	53
Csp6I	GTAC	1 cut(s)	157
CviAII	CATG	2 cut(s)	77, 265
CviQI	GTAC	1 cut(s)	157
DdeI	CTNAG	1 cut(s)	134
Eco32I	GATATC	1 cut(s)	241
Eco47I	GGWCC	1 cut(s)	53
EcoO109I	RGGNCCY	1 cut(s)	53
EcoRII	CCWGG	1 cut(s)	55
EcoRV	GATATC	1 cut(s)	241
FaeI	CATG	2 cut(s)	80, 268
FaiI	YATR	6 cut(s)	74, 78, 146, 266, 281, 286
FatI	CATG	2 cut(s)	76, 264
Fnu4HI	GCNGC	2 cut(s)	141, 180
FokI	GGATG	1 cut(s)	34
Fsp4HI	GCNGC	2 cut(s)	141, 180
FspBI	CTAG	1 cut(s)	36
GluI	GCNGC	2 cut(s)	141, 180
HapII	CCGG	3 cut(s)	9, 220, 252
Hin1II	CATG	2 cut(s)	80, 268
HinfI	GANTC	1 cut(s)	47
HpaII	CCGG	3 cut(s)	9, 220, 252
Hpy166II	GTNNAC	1 cut(s)	262
Hpy188III	TCNNGA	2 cut(s)	89, 252
Hpy8I	GTNNAC	1 cut(s)	262
HpyCH4III	ACNGT	4 cut(s)	130, 161, 235, 259
HpyF3I	CTNAG	1 cut(s)	134
Hsp92II	CATG	2 cut(s)	80, 268
Kpn2I	TCCGGA	1 cut(s)	251
LpnPI	CCDG	9 cut(s)	22, 36, 42, 69, 69, 84, 89, 233, 265
Lsp1109I	GCAGC	2 cut(s)	127, 166
LweI	GCATC	1 cut(s)	12
MaeI	CTAG	1 cut(s)	36
MboII	GAAGA	1 cut(s)	182
MluCI	AATT	1 cut(s)	189
MnlI	CCTC	1 cut(s)	187
MroI	TCCGGA	1 cut(s)	251
MspI	CCGG	3 cut(s)	9, 220, 252
MspR9I	CCNGG	2 cut(s)	57, 221
MvaI	CCWGG	1 cut(s)	57
NciI	CCSGG	1 cut(s)	221
NlaIII	CATG	2 cut(s)	80, 268
NspV	TTCGAA	1 cut(s)	229
PfeI	GAWTC	1 cut(s)	47
PfoI	TCCNGGA	1 cut(s)	55
PkrI	GCNGC	2 cut(s)	142, 181
PpuMI	RGGWCCY	1 cut(s)	53
PsiI	TTATAA	1 cut(s)	286
Psp5II	RGGWCCY	1 cut(s)	53
Psp6I	CCWGG	1 cut(s)	55
PspGI	CCWGG	1 cut(s)	55
PspPI	GGNCC	1 cut(s)	53
PspPPI	RGGWCCY	1 cut(s)	53
PstNI	CAGNNNCTG	1 cut(s)	56
RsaI	GTAC	1 cut(s)	158
RsaNI	GTAC	1 cut(s)	157
SatI	GCNGC	2 cut(s)	141, 180
Sau96I	GGNCC	1 cut(s)	53
ScrFI	CCNGG	2 cut(s)	57, 221
SetI	ASST	2 cut(s)	55, 73
SfaNI	GCATC	1 cut(s)	12
SfuI	TTCGAA	1 cut(s)	229
SinI	GGWCC	1 cut(s)	53
Sse9I	AATT	1 cut(s)	189
SspMI	CTAG	1 cut(s)	36
StyD4I	CCNGG	2 cut(s)	55, 219
TaaI	ACNGT	4 cut(s)	130, 161, 235, 259
TaqI	TCGA	1 cut(s)	229
TasI	AATT	1 cut(s)	189
TfiI	GAWTC	1 cut(s)	47
TscAI	CASTG	1 cut(s)	142
TseI	GCWGC	2 cut(s)	140, 179
TspRI	CASTG	1 cut(s)	142
VpaK11BI	GGWCC	1 cut(s)	53
XspI	CTAG	1 cut(s)	36

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.