Rmu_sc0001782.1_g000049

Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001782.1
Physical Location & Seq
Forward (+)
233992 .. 240160
6169 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001782.1_g000049.1.cds

Sequence Viewer

Length: 1380 bp
atggcttcttgtctgcaactcaacgctaagcccttcacccctcttgtctctccgaaccccctctccaaacacaccttcaagcttggcagggtccggtgctccgccgtctcaccctccaaacgctacaccatcactctgcttcccggcgatggcattggccccgaagtcatttcagtcgccaaaaacgtcctcaacctcgctgccaccatcgaagggattgagtttaaatatcaagaaatgcctgtgggtggaaatgccttggatttgactggagtgccgttaccagaagagaccctttcggcagctaagcaatccgatgcagttctgctgggagcaattggggggtacaaatgggataaaaacgaaaagcatttaaaaccagaaactgggttgcttaagcttcgggaaggtcttaaagtgtttgcaaatttgaggccagcagttgttttaccgcagttggtcgatgcctctactttgaagagagaggtcgccgaaggggttgaccttatggttataagagagctcactggtggtatatactttggacagccaaggggttttggcactaatgaaaacggtgaggagattggtttcaataccgaggtgtatgctgcctatgagattgatcgtattgctcgagttgcatttgagactgctaggaagcggcagggaaagctctgtagtgttgacaaagcaaatgtattggaggcatcaatgttttggagaaaaagaatcctggaaatagccttggattatcctgatgttgaactctcacacatgtatgttgataatgcggcaatgcagcttgttcgtaatccaaaacagtttgatacaattgtaacaaacaacatatttggcgatatattatctgatgaggcctcaatgattactggaagtattgggatgcttccatctgctagtcttggagaatcaggtcctggactttttgaacctatacatggttctgctcctgatattgctggacaggataaggcaaacccattagcaacggttctcagtgctgctatgcttttgaagtacggtcttggagaagaaaatgctgccaagagaattgaggcagcagtcctagatactttgaaccgggggtttcgaacggttgatatctattcgtctggaacgaagttggtaggatgtaaagaaatgggtgaagaggtattgaagtcagttgactctctggttccttctccgatgctgcagatatactccaatgaggtcggcaagcgcatcctggagatcaactccaacaacgccgctgcttctgctgctgaaaacggcgcgtcggagaccgccgaggctcccagtgaggatgtcaagactgaccgagtcaacctgatctgcagtagtgttaggcgtttctag

Protein Analysis

459

Amino Acids

49.49

Weight (kDa)

5.37

Isoelectric Point (pI)

36.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 515
AccB7I CCANNNNNTGG 1 cut(s) 386
AccII CGCG 1 cut(s) 1298
AciI CCGC 6 cut(s) 102, 452, 664, 794, 1272, 1308
AcsI RAATTY 1 cut(s) 427
AfaI GTAC 2 cut(s) 347, 1040
AfiI CCNNNNNNNGG 5 cut(s) 149, 213, 248, 386, 959
AflII CTTAAG 1 cut(s) 395
AflIII ACRYGT 1 cut(s) 777
AgsI TTSAA 8 cut(s) 79, 478, 595, 767, 950, 1036, 1099, 1180
AjnI CCWGG 3 cut(s) 735, 937, 1248
AjuI GAANNNNNNNTTGG 2 cut(s) 59, 91
AloI GAACNNNNNNTCC 2 cut(s) 47, 79
AluBI AGCT 6 cut(s) 82, 305, 400, 523, 676, 805
AluI AGCT 6 cut(s) 82, 305, 400, 523, 676, 805
Alw21I GWGCWC 2 cut(s) 101, 525
Alw26I GTCTC 5 cut(s) 52, 112, 284, 644, 1298
AlwNI CAGNNNCTG 2 cut(s) 386, 938
Ama87I CYCGRG 1 cut(s) 636
AoxI GGCC 3 cut(s) 157, 434, 876
ApoI RAATTY 1 cut(s) 427
AspLEI GCGC 2 cut(s) 1245, 1298
AspS9I GGNCC 3 cut(s) 91, 158, 935
AsuC2I CCSGG 2 cut(s) 144, 1103
AsuHPI GGTGA 4 cut(s) 28, 102, 590, 1178
AsuII TTCGAA 1 cut(s) 1111
AvaI CYCGRG 1 cut(s) 636
AvaII GGWCC 2 cut(s) 91, 935
BaeI ACNNNNGTAYC 2 cut(s) 822, 855
BanII GRGCYC 1 cut(s) 525
Bbv12I GWGCWC 2 cut(s) 101, 525
BccI CCATC 4 cut(s) 137, 143, 215, 919
BceAI ACGGC 3 cut(s) 89, 262, 1309
BcgI CGANNNNNNTGC 4 cut(s) 590, 624, 791, 825
BciT130I CCWGG 3 cut(s) 737, 939, 1250
BcnI CCSGG 2 cut(s) 144, 1103
BcoDI GTCTC 5 cut(s) 52, 112, 284, 644, 1298
BfaI CTAG 4 cut(s) 657, 918, 1088, 1378
BfmI CTRYAG 3 cut(s) 679, 1214, 1357
BfrI CTTAAG 1 cut(s) 395
BlpI GCTNAGC 2 cut(s) 27, 306
Bme1390I CCNGG 5 cut(s) 144, 737, 939, 1103, 1250
Bme18I GGWCC 2 cut(s) 91, 935
BmeT110I CYCGRG 1 cut(s) 636
BmgT120I GGNCC 3 cut(s) 91, 158, 935
BmiI GGNNCC 4 cut(s) 92, 160, 1200, 1317
BmrFI CCNGG 5 cut(s) 144, 737, 939, 1103, 1250
BmrI ACTGGG 2 cut(s) 396, 1314
BmsI GCATC 6 cut(s) 307, 454, 719, 894, 1200, 1254
BmuI ACTGGG 2 cut(s) 396, 1314
BplI GAGNNNNNCTC 2 cut(s) 1244, 1276
BpmI CTGGAG 2 cut(s) 291, 1271
Bpu1102I GCTNAGC 2 cut(s) 27, 306
Bpu14I TTCGAA 1 cut(s) 1111
BpuMI CCSGG 2 cut(s) 144, 1103
BsaI GGTCTC 2 cut(s) 284, 1298
BsaJI CCNNGG 6 cut(s) 258, 551, 600, 747, 1102, 1311
BsaWI WCCGGW 1 cut(s) 93
BsaXI ACNNNNNCTCC 2 cut(s) 47, 77
Bsc4I CCNNNNNNNGG 5 cut(s) 149, 213, 248, 386, 959
Bse1I ACTGG 5 cut(s) 274, 391, 532, 895, 1320
Bse3DI GCAATG 1 cut(s) 804
BseBI CCWGG 3 cut(s) 737, 939, 1250
BseDI CCNNGG 6 cut(s) 258, 551, 600, 747, 1102, 1311
BseGI GGATG 4 cut(s) 909, 1157, 1245, 1333
BseLI CCNNNNNNNGG 5 cut(s) 149, 213, 248, 386, 959
BseMI GCAATG 1 cut(s) 804
BseMII CTCAG 1 cut(s) 1030
BseNI ACTGG 5 cut(s) 274, 391, 532, 895, 1320
BseRI GAGGAG 1 cut(s) 596
BseYI CCCAGC 1 cut(s) 328
Bsh1236I CGCG 1 cut(s) 1298
BshFI GGCC 3 cut(s) 159, 436, 878
BsiHKAI GWGCWC 2 cut(s) 101, 525
BsiHKCI CYCGRG 1 cut(s) 636
BsiSI CCGG 3 cut(s) 94, 144, 1102
BslI CCNNNNNNNGG 5 cut(s) 149, 213, 248, 386, 959
BsmAI GTCTC 5 cut(s) 52, 112, 284, 644, 1298
BsmBI CGTCTC 1 cut(s) 112
BsnI GGCC 3 cut(s) 159, 436, 878
Bso31I GGTCTC 2 cut(s) 284, 1298
BsoBI CYCGRG 1 cut(s) 636
Bsp119I TTCGAA 1 cut(s) 1111
Bsp1286I GDGCHC 2 cut(s) 101, 525
Bsp143I GATC 3 cut(s) 625, 1254, 1353
Bsp1720I GCTNAGC 2 cut(s) 27, 306
BspACI CCGC 6 cut(s) 102, 452, 664, 794, 1272, 1308
BspANI GGCC 3 cut(s) 159, 436, 878
BspCNI CTCAG 1 cut(s) 1029
BspFNI CGCG 1 cut(s) 1298
BspLI GGNNCC 4 cut(s) 92, 160, 1200, 1317
BspMAI CTGCAG 2 cut(s) 1218, 1361
BspT104I TTCGAA 1 cut(s) 1111
BspTI CTTAAG 1 cut(s) 395
BspTNI GGTCTC 2 cut(s) 284, 1298
BsrDI GCAATG 1 cut(s) 804
BsrI ACTGG 5 cut(s) 274, 391, 532, 895, 1320
BssECI CCNNGG 6 cut(s) 258, 551, 600, 747, 1102, 1311
BssMI GATC 3 cut(s) 625, 1254, 1353
BssT1I CCWWGG 3 cut(s) 258, 551, 747
Bst2UI CCWGG 3 cut(s) 737, 939, 1250
Bst4CI ACNGT 5 cut(s) 578, 825, 1012, 1043, 1117
Bst6I CTCTTC 3 cut(s) 282, 473, 1164
BstAFI CTTAAG 1 cut(s) 395
BstBI TTCGAA 1 cut(s) 1111
BstC8I GCNNGC 2 cut(s) 438, 1241
BstDEI CTNAG 3 cut(s) 27, 306, 1016
BstF5I GGATG 4 cut(s) 909, 1157, 1245, 1333
BstFNI CGCG 1 cut(s) 1298
BstHHI GCGC 2 cut(s) 1245, 1298
BstKTI GATC 3 cut(s) 628, 1257, 1356
BstMAI GTCTC 5 cut(s) 52, 112, 284, 644, 1298
BstMBI GATC 3 cut(s) 625, 1254, 1353
BstMWI GCNNNNNNNGC 4 cut(s) 641, 673, 1280, 1283
BstNI CCWGG 3 cut(s) 737, 939, 1250
BstNSI RCATGY 1 cut(s) 781
BstSCI CCNGG 5 cut(s) 142, 735, 937, 1101, 1248
BstSFI CTRYAG 3 cut(s) 679, 1214, 1357
BstUI CGCG 1 cut(s) 1298
BsuRI GGCC 3 cut(s) 159, 436, 878
BtgZI GCGATG 1 cut(s) 162
BtsCI GGATG 4 cut(s) 909, 1157, 1245, 1333
BtsIMutI CAGTG 3 cut(s) 525, 1024, 1327
Cac8I GCNNGC 2 cut(s) 438, 1241
CaiI CAGNNNCTG 2 cut(s) 386, 938
CfoI GCGC 2 cut(s) 1245, 1298
Cfr13I GGNCC 3 cut(s) 91, 158, 935
CseI GACGC 1 cut(s) 1287
Csp6I GTAC 2 cut(s) 346, 1039
CviAII CATG 2 cut(s) 778, 959
CviQI GTAC 2 cut(s) 346, 1039
DdeI CTNAG 3 cut(s) 27, 306, 1016
DpnI GATC 3 cut(s) 627, 1256, 1355
DpnII GATC 3 cut(s) 625, 1254, 1353
DraI TTTAAA 2 cut(s) 226, 375
Eam1104I CTCTTC 3 cut(s) 282, 473, 1164
EarI CTCTTC 3 cut(s) 282, 473, 1164
EciI GGCGGA 1 cut(s) 91
Ecl136II GAGCTC 1 cut(s) 523
Eco130I CCWWGG 3 cut(s) 258, 551, 747
Eco147I AGGCCT 1 cut(s) 878
Eco24I GRGCYC 1 cut(s) 525
Eco31I GGTCTC 2 cut(s) 284, 1298
Eco32I GATATC 1 cut(s) 1123
Eco47I GGWCC 2 cut(s) 91, 935
Eco53kI GAGCTC 1 cut(s) 523
Eco88I CYCGRG 1 cut(s) 636
EcoICRI GAGCTC 1 cut(s) 523
EcoO109I RGGNCCY 1 cut(s) 935
EcoRII CCWGG 3 cut(s) 735, 937, 1248
EcoRV GATATC 1 cut(s) 1123
EcoT14I CCWWGG 3 cut(s) 258, 551, 747
EcoT38I GRGCYC 1 cut(s) 525
ErhI CCWWGG 3 cut(s) 258, 551, 747
Esp3I CGTCTC 1 cut(s) 112
FaeI CATG 2 cut(s) 781, 962
FalI AAGNNNNNCTT 2 cut(s) 279, 311
FatI CATG 2 cut(s) 777, 958
FokI GGATG 4 cut(s) 916, 1164, 1232, 1340
FriOI GRGCYC 1 cut(s) 525
FspBI CTAG 4 cut(s) 657, 918, 1088, 1378
GlaI GCGC 2 cut(s) 1244, 1297
GsaI CCCAGC 1 cut(s) 332
GsuI CTGGAG 2 cut(s) 291, 1271
HaeIII GGCC 3 cut(s) 159, 436, 878
HapII CCGG 3 cut(s) 94, 144, 1102
HgaI GACGC 1 cut(s) 1287
HhaI GCGC 2 cut(s) 1245, 1298
Hin1II CATG 2 cut(s) 781, 962
Hin6I GCGC 2 cut(s) 1243, 1296
HinP1I GCGC 2 cut(s) 1243, 1296
HincII GTYRAC 4 cut(s) 502, 688, 1189, 1348
HindII GTYRAC 4 cut(s) 502, 688, 1189, 1348
HindIII AAGCTT 2 cut(s) 80, 398
HinfI GANTC 4 cut(s) 732, 929, 1190, 1344
HpaII CCGG 3 cut(s) 94, 144, 1102
HphI GGTGA 4 cut(s) 28, 102, 590, 1178
Hpy166II GTNNAC 4 cut(s) 502, 688, 1189, 1348
Hpy188I TCNGA 5 cut(s) 54, 316, 871, 1209, 1303
Hpy188III TCNNGA 6 cut(s) 233, 404, 758, 971, 1134, 1333
Hpy8I GTNNAC 4 cut(s) 502, 688, 1189, 1348
Hpy99I CGWCG 1 cut(s) 1303
HpyAV CCTTC 6 cut(s) 43, 85, 206, 401, 488, 1212
HpyCH4III ACNGT 5 cut(s) 578, 825, 1012, 1043, 1117
HpyCH4IV ACGT 1 cut(s) 186
HpyCH4V TGCA 7 cut(s) 16, 320, 425, 644, 802, 1216, 1359
HpyF10VI GCNNNNNNNGC 4 cut(s) 641, 673, 1280, 1283
HpyF3I CTNAG 3 cut(s) 27, 306, 1016
HpySE526I ACGT 1 cut(s) 186
Hsp92II CATG 2 cut(s) 781, 962
HspAI GCGC 2 cut(s) 1243, 1296
Kzo9I GATC 3 cut(s) 625, 1254, 1353
LmnI GCTCC 4 cut(s) 104, 332, 973, 1321
LweI GCATC 6 cut(s) 307, 454, 719, 894, 1200, 1254
MaeI CTAG 4 cut(s) 657, 918, 1088, 1378
MaeII ACGT 1 cut(s) 186
MaeIII GTNAC 2 cut(s) 279, 838
MalI GATC 3 cut(s) 627, 1256, 1355
MboI GATC 3 cut(s) 625, 1254, 1353
MboII GAAGA 4 cut(s) 299, 490, 1064, 1181
MfeI CAATTG 2 cut(s) 336, 834
MhlI GDGCHC 2 cut(s) 101, 525
MluCI AATT 4 cut(s) 336, 427, 834, 1071
MlyI GAGTC 2 cut(s) 1184, 1353
MmeI TCCRAC 2 cut(s) 1281, 1287
MseI TTAA 4 cut(s) 225, 374, 396, 414
MslI CAYNNNNRTG 1 cut(s) 780
MspA1I CMGCKG 1 cut(s) 1274
MspCI CTTAAG 1 cut(s) 395
MspI CCGG 3 cut(s) 94, 144, 1102
MspR9I CCNGG 5 cut(s) 144, 737, 939, 1103, 1250
MunI CAATTG 2 cut(s) 336, 834
MvaI CCWGG 3 cut(s) 737, 939, 1250
MvnI CGCG 1 cut(s) 1298
MwoI GCNNNNNNNGC 4 cut(s) 641, 673, 1280, 1283
NciI CCSGG 2 cut(s) 144, 1103
NdeII GATC 3 cut(s) 625, 1254, 1353
NlaIII CATG 2 cut(s) 781, 962
NlaIV GGNNCC 4 cut(s) 92, 160, 1200, 1317
NmeAIII GCCGAG 1 cut(s) 1336
NspI RCATGY 1 cut(s) 781
NspV TTCGAA 1 cut(s) 1111
PaeR7I CTCGAG 1 cut(s) 636
PceI AGGCCT 1 cut(s) 878
PciI ACATGT 1 cut(s) 777
PcsI WCGNNNNNNNCGW 3 cut(s) 183, 634, 1136
PfeI GAWTC 2 cut(s) 732, 929
PflFI GACNNNGTC 1 cut(s) 1343
PflMI CCANNNNNTGG 1 cut(s) 386
PfoI TCCNGGA 3 cut(s) 735, 937, 1248
PleI GAGTC 2 cut(s) 1184, 1352
PpsI GAGTC 2 cut(s) 1184, 1352
PpuMI RGGWCCY 1 cut(s) 935
PscI ACATGT 1 cut(s) 777
PsiI TTATAA 1 cut(s) 515
Psp124BI GAGCTC 1 cut(s) 525
Psp5II RGGWCCY 1 cut(s) 935
Psp6I CCWGG 3 cut(s) 735, 937, 1248
PspFI CCCAGC 1 cut(s) 328
PspGI CCWGG 3 cut(s) 735, 937, 1248
PspN4I GGNNCC 4 cut(s) 92, 160, 1200, 1317
PspPI GGNCC 3 cut(s) 91, 158, 935
PspPPI RGGWCCY 1 cut(s) 935
PspXI VCTCGAGB 1 cut(s) 636
PstI CTGCAG 2 cut(s) 1218, 1361
PstNI CAGNNNCTG 2 cut(s) 386, 938
PsyI GACNNNGTC 1 cut(s) 1343
RsaI GTAC 2 cut(s) 347, 1040
RsaNI GTAC 2 cut(s) 346, 1039
RseI CAYNNNNRTG 1 cut(s) 780
SacI GAGCTC 1 cut(s) 525
SaqAI TTAA 4 cut(s) 225, 374, 396, 414
Sau3AI GATC 3 cut(s) 625, 1254, 1353
Sau96I GGNCC 3 cut(s) 91, 158, 935
SchI GAGTC 2 cut(s) 1184, 1353
ScrFI CCNGG 5 cut(s) 144, 737, 939, 1103, 1250
SduI GDGCHC 2 cut(s) 101, 525
SfaNI GCATC 6 cut(s) 307, 454, 719, 894, 1200, 1254
SfcI CTRYAG 3 cut(s) 679, 1214, 1357
Sfr274I CTCGAG 1 cut(s) 636
SfuI TTCGAA 1 cut(s) 1111
SinI GGWCC 2 cut(s) 91, 935
SlaI CTCGAG 1 cut(s) 636
SmiMI CAYNNNNRTG 1 cut(s) 780
SmlI CTYRAG 2 cut(s) 395, 636
SmoI CTYRAG 2 cut(s) 395, 636
Sse9I AATT 4 cut(s) 336, 427, 834, 1071
SseBI AGGCCT 1 cut(s) 878
SsiI CCGC 6 cut(s) 102, 452, 664, 794, 1272, 1308
SspMI CTAG 4 cut(s) 657, 918, 1088, 1378
SstI GAGCTC 1 cut(s) 525
StuI AGGCCT 1 cut(s) 878
StyD4I CCNGG 5 cut(s) 142, 735, 937, 1101, 1248
StyI CCWWGG 3 cut(s) 258, 551, 747
TaaI ACNGT 5 cut(s) 578, 825, 1012, 1043, 1117
TaiI ACGT 1 cut(s) 189
TaqI TCGA 4 cut(s) 210, 462, 637, 1111
TaqII GACCGA 1 cut(s) 1356
TasI AATT 4 cut(s) 336, 427, 834, 1071
TauI GCSGC 3 cut(s) 667, 797, 1274
TfiI GAWTC 2 cut(s) 732, 929
Tru1I TTAA 4 cut(s) 225, 374, 396, 414
Tru9I TTAA 4 cut(s) 225, 374, 396, 414
TscAI CASTG 3 cut(s) 532, 1024, 1327
TspDTI ATGAA 1 cut(s) 585
TspRI CASTG 3 cut(s) 532, 1024, 1327
Tth111I GACNNNGTC 1 cut(s) 1343
Van91I CCANNNNNTGG 1 cut(s) 386
Vha464I CTTAAG 1 cut(s) 395
VpaK11BI GGWCC 2 cut(s) 91, 935
XapI RAATTY 1 cut(s) 427
XceI RCATGY 1 cut(s) 781
XhoI CTCGAG 1 cut(s) 636
XspI CTAG 4 cut(s) 657, 918, 1088, 1378
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.